RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 IGLC3P0DOY3 106 aa7.7□□□□□ -1.18
PTCH1-218ENST00000548945 C9orf129Q5T035 196 aaKnown RBP7.7□□□□□ -1.18
PTCH1-218ENST00000548945 PAM16Q9Y3D7 125 aa7.7□□□□□ -1.18
PTCH1-218ENST00000548945 TINCRA0A1B0GVN0 87 aa7.69□□□□□ -1.18
PTCH1-218ENST00000548945 C11orf86A6NJI1 115 aa7.69□□□□□ -1.18
PTCH1-218ENST00000548945 SEC11AP67812 179 aa7.69□□□□□ -1.18
PTCH1-218ENST00000548945 SPATA45Q537H7 98 aa7.69□□□□□ -1.18
PTCH1-218ENST00000548945 C2orf82Q6UX34 121 aa7.69□□□□□ -1.18
PTCH1-218ENST00000548945 ZNF861PO60384 105 aa7.68□□□□□ -1.18
PTCH1-218ENST00000548945 FAM19A3Q7Z5A8 133 aa7.68□□□□□ -1.18
PTCH1-218ENST00000548945 GEMIN7Q9H840 131 aaKnown RBP7.68□□□□□ -1.18
PTCH1-218ENST00000548945 HERVK_113P63121 156 aa7.67□□□□□ -1.18
PTCH1-218ENST00000548945 PRR4Q16378 134 aa7.67□□□□□ -1.18
PTCH1-218ENST00000548945 PRSS2P07478 247 aa7.66□□□□□ -1.18
PTCH1-218ENST00000548945 HERVK_113P61574 105 aa7.66□□□□□ -1.18
PTCH1-218ENST00000548945 TMEM170BQ5T4T1 132 aa7.66□□□□□ -1.18
PTCH1-218ENST00000548945 IGLV5-45A0A087WSX0 123 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 TSTD3H0UI37 97 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 H3BRM9 83 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 ZNF22P17026 224 aaPredicted RBP7.65□□□□□ -1.18
PTCH1-218ENST00000548945 CKS1BP61024 79 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 LBHQ53QV2 105 aaPredicted RBP7.65□□□□□ -1.18
PTCH1-218ENST00000548945 ANKRD39Q53RE8 183 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 Q8IZM0 81 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 LINC00469Q8N7U9 141 aa7.65□□□□□ -1.18
PTCH1-218ENST00000548945 A0A0U1RQV1 116 aa7.64□□□□□ -1.19
PTCH1-218ENST00000548945 TP73-AS1Q9UF72 201 aa7.64□□□□□ -1.19
PTCH1-218ENST00000548945 C22orf24Q9Y442 160 aa7.64□□□□□ -1.19
PTCH1-218ENST00000548945 TMEM223A0PJW6 202 aa7.63□□□□□ -1.19
PTCH1-218ENST00000548945 E9PLD3 99 aa7.63□□□□□ -1.19
PTCH1-218ENST00000548945 C6orf226Q5I0X4 101 aa7.63□□□□□ -1.19
PTCH1-218ENST00000548945 NMUP48645 174 aa7.62□□□□□ -1.19
PTCH1-218ENST00000548945 PRO1933Q9H354 126 aa7.62□□□□□ -1.19
PTCH1-218ENST00000548945 TOMM7Q9P0U1 55 aa7.62□□□□□ -1.19
PTCH1-218ENST00000548945 CDKN2A-AS1Q9UH64 79 aa7.62□□□□□ -1.19
PTCH1-218ENST00000548945 COX8AP10176 69 aa7.61□□□□□ -1.19
PTCH1-218ENST00000548945 RPL28P46779 137 aaKnown RBP7.61□□□□□ -1.19
PTCH1-218ENST00000548945 UQCR10Q9UDW1 63 aa7.61□□□□□ -1.19
PTCH1-218ENST00000548945 IGKV2D-26A0A0A0MRZ7 120 aa7.6□□□□□ -1.19
PTCH1-218ENST00000548945 CXCL5P42830 114 aa7.6□□□□□ -1.19
PTCH1-218ENST00000548945 SLC25A34Q6PIV7 304 aa7.6□□□□□ -1.19
PTCH1-218ENST00000548945 MRPL55Q7Z7F7 128 aaKnown RBP7.6□□□□□ -1.19
PTCH1-218ENST00000548945 PLEKHB2Q96CS7 222 aa7.6□□□□□ -1.19
PTCH1-218ENST00000548945 C14orf144Q96I85 54 aa7.6□□□□□ -1.19
PTCH1-218ENST00000548945 XAGE1AQ9HD64 81 aa7.6□□□□□ -1.19
PTCH1-218ENST00000548945 LEPROTO15243 131 aa7.59□□□□□ -1.19
PTCH1-218ENST00000548945 BCE1O60756 84 aa7.59□□□□□ -1.19
PTCH1-218ENST00000548945 SPINK8P0C7L1 97 aa7.59□□□□□ -1.19
PTCH1-218ENST00000548945 MIEN1Q9BRT3 115 aa7.59□□□□□ -1.19
PTCH1-218ENST00000548945 A0A087X002 238 aa7.58□□□□□ -1.2
PTCH1-218ENST00000548945 SMIM1B2RUZ4 78 aa7.58□□□□□ -1.2
PTCH1-218ENST00000548945 DLEU1O43261 78 aa7.58□□□□□ -1.2
PTCH1-218ENST00000548945 CRYGAP11844 174 aa7.58□□□□□ -1.2
PTCH1-218ENST00000548945 LGALS3P17931 250 aaKnown RBP7.58□□□□□ -1.2
PTCH1-218ENST00000548945 BOD1L2Q8IYS8 172 aa7.58□□□□□ -1.2
PTCH1-218ENST00000548945 IGLV5-39A0A0G2JS06 123 aa7.57□□□□□ -1.2
PTCH1-218ENST00000548945 J3QQQ9 107 aa7.57□□□□□ -1.2
PTCH1-218ENST00000548945 TSPAN13O95857 204 aa7.57□□□□□ -1.2
PTCH1-218ENST00000548945 PCP2Q8IVA1 136 aa7.57□□□□□ -1.2
PTCH1-218ENST00000548945 TYMSOSQ8TAI1 123 aa7.57□□□□□ -1.2
PTCH1-218ENST00000548945 PCP4L1A6NKN8 68 aa7.56□□□□□ -1.2
PTCH1-218ENST00000548945 DDTP30046 118 aa7.56□□□□□ -1.2
PTCH1-218ENST00000548945 MYMXA0A1B0GTQ4 84 aa7.55□□□□□ -1.2
PTCH1-218ENST00000548945 ZNF815PA8K554 130 aa7.55□□□□□ -1.2
PTCH1-218ENST00000548945 TSPEAR-AS2P59090 65 aa7.55□□□□□ -1.2
PTCH1-218ENST00000548945 LINC00167Q96N53 147 aa7.55□□□□□ -1.2
PTCH1-218ENST00000548945 IGLV5-37A0A075B6J1 123 aa7.54□□□□□ -1.2
PTCH1-218ENST00000548945 TTTY13Q9BZ97 58 aa7.54□□□□□ -1.2
PTCH1-218ENST00000548945 FAM229BQ4G0N7 80 aa7.53□□□□□ -1.2
PTCH1-218ENST00000548945 KRTAP13-1Q8IUC0 172 aa7.53□□□□□ -1.2
PTCH1-218ENST00000548945 COX7B2Q8TF08 81 aa7.53□□□□□ -1.2
PTCH1-218ENST00000548945 NDUFA12Q9UI09 145 aa7.53□□□□□ -1.2
PTCH1-218ENST00000548945 RPL37AP8A6NKH3 93 aa7.52□□□□□ -1.21
PTCH1-218ENST00000548945 CTAG1AP78358 180 aa7.52□□□□□ -1.21
PTCH1-218ENST00000548945 SFTA2Q6UW10 78 aa7.52□□□□□ -1.21
PTCH1-218ENST00000548945 HIGD1BQ9P298 99 aa7.52□□□□□ -1.21
PTCH1-218ENST00000548945 SCGB1D4Q6XE38 83 aa7.51□□□□□ -1.21
PTCH1-218ENST00000548945 C2orf91Q6ZV80 131 aa7.51□□□□□ -1.21
PTCH1-218ENST00000548945 NKAPP1Q8N9T2 125 aa7.51□□□□□ -1.21
PTCH1-218ENST00000548945 UBE2AP49459 152 aa7.5□□□□□ -1.21
PTCH1-218ENST00000548945 HERV-K104P63124 156 aa7.5□□□□□ -1.21
PTCH1-218ENST00000548945 KRTAP13-2Q52LG2 175 aa7.5□□□□□ -1.21
PTCH1-218ENST00000548945 KRTAP9-2Q9BYQ4 174 aa7.5□□□□□ -1.21
PTCH1-218ENST00000548945 FAT4Q6V0I7 4981 aa7.5□□□□□ -1.21
PTCH1-218ENST00000548945 GAGE10A6NGK3 116 aa7.49□□□□□ -1.21
PTCH1-218ENST00000548945 LCE2AQ5TA79 106 aaPredicted RBP7.49□□□□□ -1.21
PTCH1-218ENST00000548945 ZNF625Q96I27 306 aaPredicted RBP7.49□□□□□ -1.21
PTCH1-218ENST00000548945 ANAPC11Q9NYG5 84 aa7.49□□□□□ -1.21
PTCH1-218ENST00000548945 A0A0J9YXY3 114 aa7.48□□□□□ -1.21
PTCH1-218ENST00000548945 TPRXLQ17RH7 258 aa7.48□□□□□ -1.21
PTCH1-218ENST00000548945 LINC00304Q8N9R0 145 aa7.48□□□□□ -1.21
PTCH1-218ENST00000548945 TMEM238C9JI98 176 aa7.47□□□□□ -1.21
PTCH1-218ENST00000548945 HSD52Q0P140 79 aa7.47□□□□□ -1.21
PTCH1-218ENST00000548945 LINC00587B1AMM8 73 aa7.46□□□□□ -1.22
PTCH1-218ENST00000548945 TIMM17BO60830 172 aa7.46□□□□□ -1.22
PTCH1-218ENST00000548945 TAL2Q16559 108 aa7.46□□□□□ -1.22
PTCH1-218ENST00000548945 SPANXB1Q9NS25 103 aaPredicted RBP7.46□□□□□ -1.22
PTCH1-218ENST00000548945 M0R143 59 aa7.45□□□□□ -1.22
PTCH1-218ENST00000548945 MEIG1Q5JSS6 88 aa7.45□□□□□ -1.22
PTCH1-218ENST00000548945 HIST1H4GQ99525 98 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms