RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 COX17Q14061 63 aa10.14□□□□□ -0.79
CHMP1A-205ENST00000548650 BAGE3Q86Y29 109 aa10.14□□□□□ -0.79
CHMP1A-205ENST00000548650 ZNF625Q96I27 306 aaPredicted RBP10.14□□□□□ -0.79
CHMP1A-205ENST00000548650 COLCA2A8K830 154 aa10.13□□□□□ -0.79
CHMP1A-205ENST00000548650 M0R378 163 aa10.12□□□□□ -0.79
CHMP1A-205ENST00000548650 FAM19A1Q7Z5A9 133 aa10.12□□□□□ -0.79
CHMP1A-205ENST00000548650 LINC00304Q8N9R0 145 aa10.12□□□□□ -0.79
CHMP1A-205ENST00000548650 HSBP1O75506 76 aa10.11□□□□□ -0.79
CHMP1A-205ENST00000548650 RPL24P83731 157 aaKnown RBP10.11□□□□□ -0.79
CHMP1A-205ENST00000548650 TMEM170BQ5T4T1 132 aa10.11□□□□□ -0.79
CHMP1A-205ENST00000548650 SFTA2Q6UW10 78 aa10.11□□□□□ -0.79
CHMP1A-205ENST00000548650 FAM19A2Q8N3H0 131 aa10.11□□□□□ -0.79
CHMP1A-205ENST00000548650 RETNLBQ9BQ08 111 aa10.1□□□□□ -0.79
CHMP1A-205ENST00000548650 SERF1AO75920 110 aa10.08□□□□□ -0.8
CHMP1A-205ENST00000548650 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
CHMP1A-205ENST00000548650 CHTOPQ9Y3Y2 248 aaKnown RBP10.08□□□□□ -0.8
CHMP1A-205ENST00000548650 IGKV2D-26A0A0A0MRZ7 120 aa10.07□□□□□ -0.8
CHMP1A-205ENST00000548650 LINC00310P59036 64 aa10.07□□□□□ -0.8
CHMP1A-205ENST00000548650 PLEKHB2Q96CS7 222 aa10.06□□□□□ -0.8
CHMP1A-205ENST00000548650 TMEM223A0PJW6 202 aa10.05□□□□□ -0.8
CHMP1A-205ENST00000548650 TRAV12-1A0A0B4J245 112 aa10.04□□□□□ -0.8
CHMP1A-205ENST00000548650 LINC00158P58513 81 aa10.04□□□□□ -0.8
CHMP1A-205ENST00000548650 C3orf22Q8N5N4 141 aa10.04□□□□□ -0.8
CHMP1A-205ENST00000548650 A0A0U1RQV1 116 aa10.03□□□□□ -0.8
CHMP1A-205ENST00000548650 H0Y8G0 127 aa10.03□□□□□ -0.8
CHMP1A-205ENST00000548650 HIGD2AQ9BW72 106 aa10.03□□□□□ -0.8
CHMP1A-205ENST00000548650 A0A0U1RRA0 63 aa10.02□□□□□ -0.81
CHMP1A-205ENST00000548650 LEPROTL1O95214 131 aa10.02□□□□□ -0.81
CHMP1A-205ENST00000548650 CTAG1AP78358 180 aa10.02□□□□□ -0.81
CHMP1A-205ENST00000548650 TPRXLQ17RH7 258 aa10.02□□□□□ -0.81
CHMP1A-205ENST00000548650 SPRR4Q96PI1 79 aa10.01□□□□□ -0.81
CHMP1A-205ENST00000548650 MUC17Q685J3 4493 aa10□□□□□ -0.81
CHMP1A-205ENST00000548650 FABP4P15090 132 aa10□□□□□ -0.81
CHMP1A-205ENST00000548650 SMIM13P0DJ93 91 aa9.99□□□□□ -0.81
CHMP1A-205ENST00000548650 FAT4Q6V0I7 4981 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 IGLV7-46A0A075B6I9 117 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 PRYO14603 147 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BKO60814 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BJP06899 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BOP23527 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BBP33778 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BDP58876 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BCP62807 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST2H2BEQ16778 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 BOD1L2Q8IYS8 172 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BHQ93079 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BNQ99877 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 HIST1H2BMQ99879 126 aa9.98□□□□□ -0.81
CHMP1A-205ENST00000548650 NCR3O14931 201 aa9.97□□□□□ -0.81
CHMP1A-205ENST00000548650 SPRR1AP35321 89 aa9.97□□□□□ -0.81
CHMP1A-205ENST00000548650 MEIG1Q5JSS6 88 aa9.97□□□□□ -0.81
CHMP1A-205ENST00000548650 MIR7-3HGQ8N6C7 128 aa9.97□□□□□ -0.81
CHMP1A-205ENST00000548650 HSPB8Q9UJY1 196 aa9.97□□□□□ -0.81
CHMP1A-205ENST00000548650 CDIP1Q9H305 208 aa9.96□□□□□ -0.82
CHMP1A-205ENST00000548650 KRTAP4-16G5E9R7 235 aaPredicted RBP9.95□□□□□ -0.82
CHMP1A-205ENST00000548650 HERV-K104P63124 156 aa9.95□□□□□ -0.82
CHMP1A-205ENST00000548650 LINC00337Q8N6G1 96 aa9.95□□□□□ -0.82
CHMP1A-205ENST00000548650 ZNF706Q9Y5V0 76 aaPredicted RBP9.95□□□□□ -0.82
CHMP1A-205ENST00000548650 ATP6V1G1O75348 118 aa9.94□□□□□ -0.82
CHMP1A-205ENST00000548650 LCE2AQ5TA79 106 aaPredicted RBP9.94□□□□□ -0.82
CHMP1A-205ENST00000548650 KCNQ1DNQ9H478 68 aa9.94□□□□□ -0.82
CHMP1A-205ENST00000548650 SPAG11AQ6PDA7 123 aa9.93□□□□□ -0.82
CHMP1A-205ENST00000548650 PMCHL2Q9BQD1 86 aa9.93□□□□□ -0.82
CHMP1A-205ENST00000548650 NDUFA12Q9UI09 145 aa9.93□□□□□ -0.82
CHMP1A-205ENST00000548650 TRBV10-3A0A0K0K1G6 114 aa9.92□□□□□ -0.82
CHMP1A-205ENST00000548650 TSPEAR-AS2P59090 65 aa9.92□□□□□ -0.82
CHMP1A-205ENST00000548650 PPDPFQ9H3Y8 114 aa9.92□□□□□ -0.82
CHMP1A-205ENST00000548650 SMCR5Q8TEV8 140 aa9.91□□□□□ -0.82
CHMP1A-205ENST00000548650 MAP1LC3CQ9BXW4 147 aa9.91□□□□□ -0.82
CHMP1A-205ENST00000548650 DPM2O94777 84 aa9.9□□□□□ -0.82
CHMP1A-205ENST00000548650 Q8NBF4 154 aa9.9□□□□□ -0.82
CHMP1A-205ENST00000548650 MYMXA0A1B0GTQ4 84 aa9.89□□□□□ -0.83
CHMP1A-205ENST00000548650 ETDCA0A1B0GVM5 59 aa9.89□□□□□ -0.83
CHMP1A-205ENST00000548650 LINC00587B1AMM8 73 aa9.89□□□□□ -0.83
CHMP1A-205ENST00000548650 PLNP26678 52 aa9.89□□□□□ -0.83
CHMP1A-205ENST00000548650 DAND5Q8N907 189 aa9.89□□□□□ -0.83
CHMP1A-205ENST00000548650 LINC00483Q53H64 154 aa9.88□□□□□ -0.83
CHMP1A-205ENST00000548650 FP248Q71RG6 208 aaPredicted RBP9.88□□□□□ -0.83
CHMP1A-205ENST00000548650 IGKCP01834 107 aa9.87□□□□□ -0.83
CHMP1A-205ENST00000548650 LOC107984156A0A0G2JMH3 177 aa9.86□□□□□ -0.83
CHMP1A-205ENST00000548650 ARL17AQ8IVW1 177 aa9.86□□□□□ -0.83
CHMP1A-205ENST00000548650 B5MCH6 92 aa9.85□□□□□ -0.83
CHMP1A-205ENST00000548650 SYS1-DBNDD2H3BUS1 97 aa9.85□□□□□ -0.83
CHMP1A-205ENST00000548650 LEPROTO15243 131 aa9.85□□□□□ -0.83
CHMP1A-205ENST00000548650 S100A1P23297 94 aa9.85□□□□□ -0.83
CHMP1A-205ENST00000548650 C4orf48Q5BLP8 95 aa9.85□□□□□ -0.83
CHMP1A-205ENST00000548650 KRTAP9-2Q9BYQ4 174 aa9.85□□□□□ -0.83
CHMP1A-205ENST00000548650 HERVK_113P61574 105 aa9.84□□□□□ -0.83
CHMP1A-205ENST00000548650 TRBV10-2A0A0K0K1G8 114 aa9.83□□□□□ -0.84
CHMP1A-205ENST00000548650 ERC2-IT1O76042 136 aa9.83□□□□□ -0.84
CHMP1A-205ENST00000548650 DDTP30046 118 aa9.83□□□□□ -0.84
CHMP1A-205ENST00000548650 S100A12P80511 92 aa9.83□□□□□ -0.84
CHMP1A-205ENST00000548650 KRTAP13-3Q3SY46 172 aa9.83□□□□□ -0.84
CHMP1A-205ENST00000548650 J3QQQ9 107 aa9.82□□□□□ -0.84
CHMP1A-205ENST00000548650 SPINK1P00995 79 aa9.82□□□□□ -0.84
CHMP1A-205ENST00000548650 COA6Q5JTJ3 125 aaKnown RBP9.82□□□□□ -0.84
CHMP1A-205ENST00000548650 GAGE2AQ6NT46 116 aa9.82□□□□□ -0.84
CHMP1A-205ENST00000548650 Q9BRP9 147 aa9.82□□□□□ -0.84
CHMP1A-205ENST00000548650 SPANXB1Q9NS25 103 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms