RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 C15orf53Q8NAA6 179 aa7.41□□□□□ -1.22
CUX1-212ENST00000547394 C6orf48Q9UBA6 75 aa7.41□□□□□ -1.22
CUX1-212ENST00000547394 B5MCH6 92 aa7.41□□□□□ -1.22
CUX1-212ENST00000547394 LECT2O14960 151 aa7.41□□□□□ -1.22
CUX1-212ENST00000547394 BAALC-AS2P0C853 105 aa7.41□□□□□ -1.22
CUX1-212ENST00000547394 RPL28P46779 137 aaKnown RBP7.41□□□□□ -1.22
CUX1-212ENST00000547394 DNAH7Q8WXX0 4024 aa7.4□□□□□ -1.22
CUX1-212ENST00000547394 TTC32Q5I0X7 151 aa7.4□□□□□ -1.22
CUX1-212ENST00000547394 DNAH9Q9NYC9 4486 aa7.4□□□□□ -1.22
CUX1-212ENST00000547394 NDUFV3P56181 108 aaKnown RBP7.4□□□□□ -1.23
CUX1-212ENST00000547394 RPL18AQ02543 176 aaKnown RBP7.4□□□□□ -1.23
CUX1-212ENST00000547394 CASC10Q5T4H9 136 aa7.4□□□□□ -1.23
CUX1-212ENST00000547394 KLK5Q9Y337 293 aaPredicted RBP7.4□□□□□ -1.23
CUX1-212ENST00000547394 DNHD1Q96M86 4753 aa7.39□□□□□ -1.23
CUX1-212ENST00000547394 ZNF561-AS1K7EIQ3 104 aa7.39□□□□□ -1.23
CUX1-212ENST00000547394 KRTAP26-1Q6PEX3 210 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 CAMK2N2Q96S95 79 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 C22orf24Q9Y442 160 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 LINC00588Q9Y4M8 146 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 Q6ZRU5 148 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 C15orf56Q8N910 161 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 H3BT86 120 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 CXCL5P42830 114 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 C1orf43Q9BWL3 253 aa7.38□□□□□ -1.23
CUX1-212ENST00000547394 CCDC179H3BU77 68 aa7.37□□□□□ -1.23
CUX1-212ENST00000547394 LINC01561Q8N1V8 128 aa7.37□□□□□ -1.23
CUX1-212ENST00000547394 TM2D3Q9BRN9 247 aa7.37□□□□□ -1.23
CUX1-212ENST00000547394 H3BNG1 76 aa7.37□□□□□ -1.23
CUX1-212ENST00000547394 LINC01600Q96MT4 127 aa7.37□□□□□ -1.23
CUX1-212ENST00000547394 PRKDCP78527 4128 aaKnown RBP7.36□□□□□ -1.23
CUX1-212ENST00000547394 C6orf99Q4VX62 202 aa7.36□□□□□ -1.23
CUX1-212ENST00000547394 S100A7L2Q5SY68 101 aa7.36□□□□□ -1.23
CUX1-212ENST00000547394 DNAL4O96015 105 aa7.36□□□□□ -1.23
CUX1-212ENST00000547394 MEGF8Q7Z7M0 2845 aa7.35□□□□□ -1.23
CUX1-212ENST00000547394 TRAV10A0A0B4J240 114 aa7.35□□□□□ -1.23
CUX1-212ENST00000547394 COX17Q14061 63 aa7.35□□□□□ -1.23
CUX1-212ENST00000547394 TRACP01848 142 aa7.34□□□□□ -1.23
CUX1-212ENST00000547394 LINC01556Q5JQF7 62 aa7.34□□□□□ -1.23
CUX1-212ENST00000547394 DNAH1Q9P2D7 4330 aa7.34□□□□□ -1.24
CUX1-212ENST00000547394 Q6Q795 121 aa7.34□□□□□ -1.24
CUX1-212ENST00000547394 C14orf132Q9NPU4 83 aa7.33□□□□□ -1.24
CUX1-212ENST00000547394 TRBV10-3A0A0K0K1G6 114 aa7.32□□□□□ -1.24
CUX1-212ENST00000547394 TMEM126AQ9H061 195 aa7.32□□□□□ -1.24
CUX1-212ENST00000547394 PLECQ15149 4684 aaKnown RBP7.32□□□□□ -1.24
CUX1-212ENST00000547394 PPDPFQ9H3Y8 114 aa7.32□□□□□ -1.24
CUX1-212ENST00000547394 Q6ZRP5 223 aa7.31□□□□□ -1.24
CUX1-212ENST00000547394 TGP01266 2768 aa7.31□□□□□ -1.24
CUX1-212ENST00000547394 GAGE2AQ6NT46 116 aa7.3□□□□□ -1.24
CUX1-212ENST00000547394 H0YGX0 51 aa7.3□□□□□ -1.24
CUX1-212ENST00000547394 NDUFC2O95298 119 aa7.3□□□□□ -1.24
CUX1-212ENST00000547394 DNAH10OSP0CZ25 163 aa7.3□□□□□ -1.24
CUX1-212ENST00000547394 FAM240AA0A1B0GVK7 77 aa7.29□□□□□ -1.24
CUX1-212ENST00000547394 KRTAP1-5Q9BYS1 174 aa7.29□□□□□ -1.24
CUX1-212ENST00000547394 USP17L23D6RBM5 183 aa7.28□□□□□ -1.24
CUX1-212ENST00000547394 Q8N814 137 aa7.28□□□□□ -1.24
CUX1-212ENST00000547394 SMCR5Q8TEV8 140 aa7.28□□□□□ -1.24
CUX1-212ENST00000547394 FAM168BA1KXE4 195 aa7.27□□□□□ -1.25
CUX1-212ENST00000547394 SYCNQ0VAF6 134 aa7.27□□□□□ -1.25
CUX1-212ENST00000547394 GVQW2A0A096LPI5 108 aaPredicted RBP7.27□□□□□ -1.25
CUX1-212ENST00000547394 FAM236AA0A1B0GUQ0 79 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 FAM236BA0A1B0GV22 79 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 STARD9Q9P2P6 4700 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 SRRM2Q9UQ35 2752 aaKnown RBP7.26□□□□□ -1.25
CUX1-212ENST00000547394 NDUFC2-KCTD14E9PQ53 114 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 IGLV6-57P01721 117 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 ORMDL1Q9P0S3 153 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 VPREB1P12018 145 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 SERTAD4-AS1Q5TG53 156 aa7.26□□□□□ -1.25
CUX1-212ENST00000547394 TRAV23DV6A0A075B6W5 121 aa7.25□□□□□ -1.25
CUX1-212ENST00000547394 TRBV7-7A0A0K0K1E9 115 aa7.25□□□□□ -1.25
CUX1-212ENST00000547394 SMIM20Q8N5G0 67 aa7.25□□□□□ -1.25
CUX1-212ENST00000547394 RPL37AP8A6NKH3 93 aa7.24□□□□□ -1.25
CUX1-212ENST00000547394 LINC00575Q6W349 94 aa7.23□□□□□ -1.25
CUX1-212ENST00000547394 Q6ZQY7 126 aa7.23□□□□□ -1.25
CUX1-212ENST00000547394 ACYP1P07311 99 aa7.23□□□□□ -1.25
CUX1-212ENST00000547394 ZNF73O43830 326 aaPredicted RBP7.22□□□□□ -1.25
CUX1-212ENST00000547394 UBE2DNLQ8IWF7 75 aa7.22□□□□□ -1.25
CUX1-212ENST00000547394 hADV29S1A0JD25 119 aa7.22□□□□□ -1.25
CUX1-212ENST00000547394 C2orf48Q96LS8 159 aa7.22□□□□□ -1.25
CUX1-212ENST00000547394 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.22□□□□□ -1.25
CUX1-212ENST00000547394 DIRC1Q969H9 104 aa7.21□□□□□ -1.26
CUX1-212ENST00000547394 LINC00643Q86TS7 51 aa7.21□□□□□ -1.26
CUX1-212ENST00000547394 INAFM2P0DMQ5 153 aa7.2□□□□□ -1.26
CUX1-212ENST00000547394 FAM19A5Q7Z5A7 132 aaPredicted RBP7.2□□□□□ -1.26
CUX1-212ENST00000547394 IGKV2-24A0A0C4DH68 120 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 LINC00846Q9NV44 126 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 LAMTOR3Q9UHA4 124 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 KMT2AQ03164 3969 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 M0R2N4 97 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 NKAPP1Q8N9T2 125 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 IMUPQ9GZP8 106 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 FBN3Q75N90 2809 aa7.19□□□□□ -1.26
CUX1-212ENST00000547394 M0R378 163 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 FUSP35637 526 aaKnown RBP eCLIP7.18□□□□□ -1.265e-7■■■■□ 23.7
CUX1-212ENST00000547394 C7orf33Q8WU49 177 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 PSCAO43653 123 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 COX7BP24311 80 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 KRTAP7-1Q8IUC3 87 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 IGKV3D-7A0A0C4DH55 119 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 LINC00167Q96N53 147 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 368.4 ms