RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ANKRD39Q53RE8 183 aa8.61□□□□□ -1.03
PTCH1-213ENST00000546820 SERTAD4-AS1Q5TG53 156 aa8.61□□□□□ -1.03
PTCH1-213ENST00000546820 NKAPP1Q8N9T2 125 aa8.61□□□□□ -1.03
PTCH1-213ENST00000546820 TP73-AS1Q9UF72 201 aa8.61□□□□□ -1.03
PTCH1-213ENST00000546820 APOBP04114 4563 aaKnown RBP8.6□□□□□ -1.03
PTCH1-213ENST00000546820 UBE2BP63146 152 aa8.6□□□□□ -1.03
PTCH1-213ENST00000546820 IGLV5-37A0A075B6J1 123 aa8.59□□□□□ -1.03
PTCH1-213ENST00000546820 TIMM17BO60830 172 aa8.59□□□□□ -1.03
PTCH1-213ENST00000546820 JOSD1Q15040 202 aaPredicted RBP8.59□□□□□ -1.03
PTCH1-213ENST00000546820 SCGB1D4Q6XE38 83 aa8.59□□□□□ -1.03
PTCH1-213ENST00000546820 MRPL55Q7Z7F7 128 aaKnown RBP8.59□□□□□ -1.03
PTCH1-213ENST00000546820 KRTAP7-1Q8IUC3 87 aa8.59□□□□□ -1.03
PTCH1-213ENST00000546820 MIEN1Q9BRT3 115 aa8.59□□□□□ -1.03
PTCH1-213ENST00000546820 KRTAP17-1Q9BYP8 105 aa8.59□□□□□ -1.03
PTCH1-213ENST00000546820 TTTY13Q9BZ97 58 aa8.58□□□□□ -1.04
PTCH1-213ENST00000546820 RYR1P21817 5038 aa8.57□□□□□ -1.04
PTCH1-213ENST00000546820 BOD1L2Q8IYS8 172 aa8.57□□□□□ -1.04
PTCH1-213ENST00000546820 HSPG2P98160 4391 aa8.57□□□□□ -1.04
PTCH1-213ENST00000546820 LOC107984156A0A0G2JMH3 177 aa8.56□□□□□ -1.04
PTCH1-213ENST00000546820 VPREB1P12018 145 aa8.56□□□□□ -1.04
PTCH1-213ENST00000546820 PCP2Q8IVA1 136 aa8.56□□□□□ -1.04
PTCH1-213ENST00000546820 ARL17AQ8IVW1 177 aa8.56□□□□□ -1.04
PTCH1-213ENST00000546820 DAND5Q8N907 189 aa8.56□□□□□ -1.04
PTCH1-213ENST00000546820 LINC00167Q96N53 147 aa8.56□□□□□ -1.04
PTCH1-213ENST00000546820 ADAMTSL4-AS1Q5T5F5 129 aa8.55□□□□□ -1.04
PTCH1-213ENST00000546820 COPS9Q8WXC6 57 aa8.55□□□□□ -1.04
PTCH1-213ENST00000546820 KRTAP4-5Q9BYR2 181 aa8.55□□□□□ -1.04
PTCH1-213ENST00000546820 PSORS1C2Q9UIG4 136 aa8.55□□□□□ -1.04
PTCH1-213ENST00000546820 GAGE10A6NGK3 116 aa8.54□□□□□ -1.04
PTCH1-213ENST00000546820 TMEM238C9JI98 176 aa8.54□□□□□ -1.04
PTCH1-213ENST00000546820 M0R378 163 aa8.54□□□□□ -1.04
PTCH1-213ENST00000546820 INAFM2P0DMQ5 153 aa8.54□□□□□ -1.04
PTCH1-213ENST00000546820 PRR3P79522 188 aaKnown RBP8.54□□□□□ -1.04
PTCH1-213ENST00000546820 VAMP8Q9BV40 100 aa8.54□□□□□ -1.04
PTCH1-213ENST00000546820 C1orf137Q5JT78 98 aa8.53□□□□□ -1.04
PTCH1-213ENST00000546820 Q6ZVH6 145 aa8.53□□□□□ -1.04
PTCH1-213ENST00000546820 RPL37AP8A6NKH3 93 aa8.52□□□□□ -1.05
PTCH1-213ENST00000546820 NDUFC2O95298 119 aa8.52□□□□□ -1.05
PTCH1-213ENST00000546820 KRTAP10-4P60372 401 aaPredicted RBP8.52□□□□□ -1.05
PTCH1-213ENST00000546820 LITAFQ99732 161 aa8.52□□□□□ -1.05
PTCH1-213ENST00000546820 NPC2P61916 151 aa8.51□□□□□ -1.05
PTCH1-213ENST00000546820 LINC00308Q8TCZ7 52 aa8.51□□□□□ -1.05
PTCH1-213ENST00000546820 SPANXDQ9BXN6 97 aa8.51□□□□□ -1.05
PTCH1-213ENST00000546820 SPANXCQ9NY87 97 aa8.51□□□□□ -1.05
PTCH1-213ENST00000546820 PAM16Q9Y3D7 125 aa8.51□□□□□ -1.05
PTCH1-213ENST00000546820 IGLV1-50A0A075B6I6 118 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 TRBV10-2A0A0K0K1G8 114 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 COX8AP10176 69 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 IFITM1P13164 125 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 S100A12P80511 92 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 SPATA45Q537H7 98 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 PYY3Q5JQD4 70 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 Q8NDZ9 215 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 HERC2O95714 4834 aa8.5□□□□□ -1.05
PTCH1-213ENST00000546820 SRRM2Q9UQ35 2752 aaKnown RBP8.49□□□□□ -1.05
PTCH1-213ENST00000546820 IGKV2-28A0A075B6P5 120 aa8.49□□□□□ -1.05
PTCH1-213ENST00000546820 DLEU1O43261 78 aa8.49□□□□□ -1.05
PTCH1-213ENST00000546820 IGKV2D-28P01615 120 aa8.49□□□□□ -1.05
PTCH1-213ENST00000546820 SRSF9Q13242 221 aaKnown RBP eCLIP8.49□□□□□ -1.05
PTCH1-213ENST00000546820 KRTAP11-1Q8IUC1 163 aa8.49□□□□□ -1.05
PTCH1-213ENST00000546820 SPANXB1Q9NS25 103 aaPredicted RBP8.49□□□□□ -1.05
PTCH1-213ENST00000546820 NCR3O14931 201 aa8.48□□□□□ -1.05
PTCH1-213ENST00000546820 IGLV7-43P04211 117 aa8.48□□□□□ -1.05
PTCH1-213ENST00000546820 SPINK6Q6UWN8 80 aa8.48□□□□□ -1.05
PTCH1-213ENST00000546820 SOSTDC1Q6X4U4 206 aa8.48□□□□□ -1.05
PTCH1-213ENST00000546820 S100A7L2Q5SY68 101 aa8.47□□□□□ -1.05
PTCH1-213ENST00000546820 LINC00518Q8N0U6 118 aa8.47□□□□□ -1.05
PTCH1-213ENST00000546820 C14orf144Q96I85 54 aa8.47□□□□□ -1.05
PTCH1-213ENST00000546820 PPDPFQ9H3Y8 114 aa8.47□□□□□ -1.05
PTCH1-213ENST00000546820 BCE1O60756 84 aa8.46□□□□□ -1.06
PTCH1-213ENST00000546820 REG3GQ6UW15 175 aa8.46□□□□□ -1.06
PTCH1-213ENST00000546820 CBY1Q9Y3M2 126 aa8.46□□□□□ -1.06
PTCH1-213ENST00000546820 EIF4EBP3O60516 100 aaPredicted RBP8.45□□□□□ -1.06
PTCH1-213ENST00000546820 SLC25A34Q6PIV7 304 aa8.45□□□□□ -1.06
PTCH1-213ENST00000546820 MUSTN1Q8IVN3 82 aa8.45□□□□□ -1.06
PTCH1-213ENST00000546820 DDTP30046 118 aa8.44□□□□□ -1.06
PTCH1-213ENST00000546820 FAT1Q14517 4588 aa8.44□□□□□ -1.06
PTCH1-213ENST00000546820 TRBV10-3A0A0K0K1G6 114 aa8.43□□□□□ -1.06
PTCH1-213ENST00000546820 PRYO14603 147 aa8.43□□□□□ -1.06
PTCH1-213ENST00000546820 ZNF861PO60384 105 aa8.43□□□□□ -1.06
PTCH1-213ENST00000546820 RPL28P46779 137 aaKnown RBP8.43□□□□□ -1.06
PTCH1-213ENST00000546820 HNRNPA3P51991 378 aaKnown RBP8.43□□□□□ -1.06
PTCH1-213ENST00000546820 DIRC1Q969H9 104 aa8.43□□□□□ -1.06
PTCH1-213ENST00000546820 TMEM126AQ9H061 195 aa8.43□□□□□ -1.06
PTCH1-213ENST00000546820 UBE2AP49459 152 aa8.42□□□□□ -1.06
PTCH1-213ENST00000546820 OR13C6PQ8NH95 151 aa8.42□□□□□ -1.06
PTCH1-213ENST00000546820 HIST1H4GQ99525 98 aa8.42□□□□□ -1.06
PTCH1-213ENST00000546820 KCNQ1DNQ9H478 68 aa8.42□□□□□ -1.06
PTCH1-213ENST00000546820 VPS13BQ7Z7G8 4022 aa8.42□□□□□ -1.06
PTCH1-213ENST00000546820 IGLV6-57P01721 117 aa8.41□□□□□ -1.06
PTCH1-213ENST00000546820 HIGD1BQ9P298 99 aa8.41□□□□□ -1.06
PTCH1-213ENST00000546820 FAM19A1Q7Z5A9 133 aa8.4□□□□□ -1.06
PTCH1-213ENST00000546820 TRAV13-2A0A0B4J235 113 aa8.38□□□□□ -1.07
PTCH1-213ENST00000546820 ETDCA0A1B0GVM5 59 aa8.38□□□□□ -1.07
PTCH1-213ENST00000546820 OXTP01178 125 aa8.38□□□□□ -1.07
PTCH1-213ENST00000546820 HINT1P49773 126 aaPredicted RBP8.38□□□□□ -1.07
PTCH1-213ENST00000546820 LINC00337Q8N6G1 96 aa8.38□□□□□ -1.07
PTCH1-213ENST00000546820 TRAV23DV6A0A075B6W5 121 aa8.37□□□□□ -1.07
PTCH1-213ENST00000546820 A6NDN8 102 aa8.37□□□□□ -1.07
PTCH1-213ENST00000546820 H0Y9J4 135 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms