RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 GAGE2EQ4V326 116 aa10.25□□□□□ -0.77
PRPF40A-212ENST00000545856 GAGE2DQ9UEU5 116 aa10.25□□□□□ -0.77
PRPF40A-212ENST00000545856 Q6ZSA8 131 aa10.24□□□□□ -0.77
PRPF40A-212ENST00000545856 SPACA4Q8TDM5 124 aa10.24□□□□□ -0.77
PRPF40A-212ENST00000545856 PKHD1P08F94 4074 aa10.23□□□□□ -0.77
PRPF40A-212ENST00000545856 IGLV5-37A0A075B6J1 123 aa10.23□□□□□ -0.77
PRPF40A-212ENST00000545856 TMEM238LA0A1B0GVL6 79 aa10.23□□□□□ -0.77
PRPF40A-212ENST00000545856 A6NJY4 79 aa10.23□□□□□ -0.77
PRPF40A-212ENST00000545856 DDTP30046 118 aa10.22□□□□□ -0.77
PRPF40A-212ENST00000545856 C9orf129Q5T035 196 aaKnown RBP10.22□□□□□ -0.77
PRPF40A-212ENST00000545856 DAND5Q8N907 189 aa10.22□□□□□ -0.77
PRPF40A-212ENST00000545856 DYNC1H1Q14204 4646 aaKnown RBP10.21□□□□□ -0.77
PRPF40A-212ENST00000545856 TRBV10-2A0A0K0K1G8 114 aa10.21□□□□□ -0.78
PRPF40A-212ENST00000545856 EPM2AB3EWF7 344 aa10.21□□□□□ -0.78
PRPF40A-212ENST00000545856 XAGE1AQ9HD64 81 aa10.21□□□□□ -0.78
PRPF40A-212ENST00000545856 IGKV2-24A0A0C4DH68 120 aa10.2□□□□□ -0.78
PRPF40A-212ENST00000545856 M0R143 59 aa10.2□□□□□ -0.78
PRPF40A-212ENST00000545856 MUSTN1Q8IVN3 82 aa10.2□□□□□ -0.78
PRPF40A-212ENST00000545856 CEND1Q8N111 149 aa10.2□□□□□ -0.78
PRPF40A-212ENST00000545856 LRP1BQ9NZR2 4599 aa10.19□□□□□ -0.78
PRPF40A-212ENST00000545856 SOSTDC1Q6X4U4 206 aa10.19□□□□□ -0.78
PRPF40A-212ENST00000545856 CBY1Q9Y3M2 126 aa10.19□□□□□ -0.78
PRPF40A-212ENST00000545856 LINC01620Q4KN68 170 aa10.18□□□□□ -0.78
PRPF40A-212ENST00000545856 PLAC8Q9NZF1 115 aa10.18□□□□□ -0.78
PRPF40A-212ENST00000545856 VPREB1P12018 145 aa10.17□□□□□ -0.78
PRPF40A-212ENST00000545856 KRTAP10-1P60331 282 aa10.17□□□□□ -0.78
PRPF40A-212ENST00000545856 NKAPP1Q8N9T2 125 aa10.17□□□□□ -0.78
PRPF40A-212ENST00000545856 LBHQ53QV2 105 aaPredicted RBP10.16□□□□□ -0.78
PRPF40A-212ENST00000545856 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.16□□□□□ -0.78
PRPF40A-212ENST00000545856 TRAV13-2A0A0B4J235 113 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 A4D1N5 150 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 M0R378 163 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 CHTF8P0CG12 524 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 NPC2P61916 151 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 CTAG1AP78358 180 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 A0A087WYN8 130 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 A0A0B4J2C4 111 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 FUSP35637 526 aaKnown RBP eCLIP10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 DPH3Q96FX2 82 aa10.14□□□□□ -0.79
PRPF40A-212ENST00000545856 EIF4EBP3O60516 100 aaPredicted RBP10.13□□□□□ -0.79
PRPF40A-212ENST00000545856 PANO1I0J062 215 aa10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 M0QXV9 152 aa10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 SERTAD4-AS1Q5TG53 156 aa10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 FAM19A5Q7Z5A7 132 aaPredicted RBP10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 MRPL55Q7Z7F7 128 aaKnown RBP10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 TMEM126AQ9H061 195 aa10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 C22orf24Q9Y442 160 aa10.12□□□□□ -0.79
PRPF40A-212ENST00000545856 A0A1W2PNN7 141 aa10.11□□□□□ -0.79
PRPF40A-212ENST00000545856 A6NDN8 102 aa10.11□□□□□ -0.79
PRPF40A-212ENST00000545856 BVES-AS1Q5T3Y7 98 aa10.11□□□□□ -0.79
PRPF40A-212ENST00000545856 A0A1B0GWB2 263 aa10.1□□□□□ -0.79
PRPF40A-212ENST00000545856 FXYD2P54710 66 aa10.1□□□□□ -0.79
PRPF40A-212ENST00000545856 IGKV2-28A0A075B6P5 120 aa10.09□□□□□ -0.79
PRPF40A-212ENST00000545856 FAM168BA1KXE4 195 aa10.09□□□□□ -0.79
PRPF40A-212ENST00000545856 IGKV2D-28P01615 120 aa10.09□□□□□ -0.79
PRPF40A-212ENST00000545856 KRTAP7-1Q8IUC3 87 aa10.09□□□□□ -0.79
PRPF40A-212ENST00000545856 IGLV6-57P01721 117 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 S100A7L2Q5SY68 101 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 SCXQ7RTU7 201 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 Q8NDZ9 215 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 CIRBP-AS1Q8TBR5 109 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 RAB37Q96AX2 223 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 FAM30AQ9NZY2 134 aa10.08□□□□□ -0.8
PRPF40A-212ENST00000545856 CDK2AP2O75956 126 aa10.07□□□□□ -0.8
PRPF40A-212ENST00000545856 C7orf33Q8WU49 177 aa10.07□□□□□ -0.8
PRPF40A-212ENST00000545856 APOBP04114 4563 aaKnown RBP10.07□□□□□ -0.8
PRPF40A-212ENST00000545856 NCR3O14931 201 aa10.06□□□□□ -0.8
PRPF40A-212ENST00000545856 CFC1BP0CG36 223 aa10.06□□□□□ -0.8
PRPF40A-212ENST00000545856 CFC1P0CG37 223 aa10.06□□□□□ -0.8
PRPF40A-212ENST00000545856 HINT1P49773 126 aaPredicted RBP10.06□□□□□ -0.8
PRPF40A-212ENST00000545856 LINC00337Q8N6G1 96 aa10.06□□□□□ -0.8
PRPF40A-212ENST00000545856 PRYO14603 147 aa10.05□□□□□ -0.8
PRPF40A-212ENST00000545856 LINC00167Q96N53 147 aa10.05□□□□□ -0.8
PRPF40A-212ENST00000545856 NHP2Q9NX24 153 aaKnown RBP10.05□□□□□ -0.8
PRPF40A-212ENST00000545856 PRO1854Q9UHT4 67 aa10.05□□□□□ -0.8
PRPF40A-212ENST00000545856 IGLV1-50A0A075B6I6 118 aa10.04□□□□□ -0.8
PRPF40A-212ENST00000545856 KCNQ1DNQ9H478 68 aa10.04□□□□□ -0.8
PRPF40A-212ENST00000545856 EPPK1P58107 5090 aaKnown RBP10.04□□□□□ -0.8
PRPF40A-212ENST00000545856 TRBV10-3A0A0K0K1G6 114 aa10.03□□□□□ -0.8
PRPF40A-212ENST00000545856 UBE2BP63146 152 aa10.03□□□□□ -0.8
PRPF40A-212ENST00000545856 OR13C6PQ8NH95 151 aa10.03□□□□□ -0.8
PRPF40A-212ENST00000545856 PRR3P79522 188 aaKnown RBP10.02□□□□□ -0.8
PRPF40A-212ENST00000545856 PCP4L1A6NKN8 68 aa10.01□□□□□ -0.81
PRPF40A-212ENST00000545856 PHF5AQ7RTV0 110 aaKnown RBP10.01□□□□□ -0.81
PRPF40A-212ENST00000545856 TRAV23DV6A0A075B6W5 121 aa10.01□□□□□ -0.81
PRPF40A-212ENST00000545856 TRBV7-6A0A0J9YX20 115 aa10.01□□□□□ -0.81
PRPF40A-212ENST00000545856 RPL13AP40429 203 aaKnown RBP10.01□□□□□ -0.81
PRPF40A-212ENST00000545856 XGP55808 180 aa10.01□□□□□ -0.81
PRPF40A-212ENST00000545856 SPRR1AP35321 89 aa10□□□□□ -0.81
PRPF40A-212ENST00000545856 RPL28P46779 137 aaKnown RBP9.99□□□□□ -0.81
PRPF40A-212ENST00000545856 GAGE10A6NGK3 116 aa9.98□□□□□ -0.81
PRPF40A-212ENST00000545856 ZNF73O43830 326 aaPredicted RBP9.98□□□□□ -0.81
PRPF40A-212ENST00000545856 REG3GQ6UW15 175 aa9.98□□□□□ -0.81
PRPF40A-212ENST00000545856 DIRC1Q969H9 104 aa9.97□□□□□ -0.81
PRPF40A-212ENST00000545856 SNHG12Q9BXW3 62 aa9.97□□□□□ -0.81
PRPF40A-212ENST00000545856 RPL37AP8A6NKH3 93 aa9.96□□□□□ -0.82
PRPF40A-212ENST00000545856 BATFQ16520 125 aa9.96□□□□□ -0.82
PRPF40A-212ENST00000545856 Q1RN00 199 aa9.96□□□□□ -0.82
PRPF40A-212ENST00000545856 COL5A1-AS1Q5SY13 56 aa9.96□□□□□ -0.82
PRPF40A-212ENST00000545856 H0Y9J4 135 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms