RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	6.18	□□□□□ -1.42
YBX3-215	ENST00000544504	TMEM238L	A0A1B0GVL6	79 aa		6.18	□□□□□ -1.42
YBX3-215	ENST00000544504		A6NJY4	79 aa		6.18	□□□□□ -1.42
YBX3-215	ENST00000544504	PTTG1IP	P53801	180 aa		6.18	□□□□□ -1.42
YBX3-215	ENST00000544504	C9orf163	Q8N9P6	203 aa		6.18	□□□□□ -1.42
YBX3-215	ENST00000544504	LITAF	Q99732	161 aa		6.18	□□□□□ -1.42
YBX3-215	ENST00000544504		M0R143	59 aa		6.17	□□□□□ -1.42
YBX3-215	ENST00000544504	SLPI	P03973	132 aa		6.17	□□□□□ -1.42
YBX3-215	ENST00000544504	RPL24	P83731	157 aa	Known RBP	6.17	□□□□□ -1.42
YBX3-215	ENST00000544504	MIR7-3HG	Q8N6C7	128 aa		6.17	□□□□□ -1.42
YBX3-215	ENST00000544504	PGPEP1	Q9NXJ5	209 aa		6.17	□□□□□ -1.42
YBX3-215	ENST00000544504		A0A0U1RRA0	63 aa		6.16	□□□□□ -1.42
YBX3-215	ENST00000544504	C9orf116	Q5BN46	136 aa	Predicted RBP	6.16	□□□□□ -1.42
YBX3-215	ENST00000544504	LINC00474	Q9P2X8	69 aa		6.16	□□□□□ -1.42
YBX3-215	ENST00000544504	IGLV5-52	A0A0A0MRZ9	124 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	LOC107984156	A0A0G2JMH3	177 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	CTAG1A	P78358	180 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	RPL18A	Q02543	176 aa	Known RBP	6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	ADAMTSL4-AS1	Q5T5F5	129 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	ARL17A	Q8IVW1	177 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	CEND1	Q8N111	149 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	LINC00308	Q8TCZ7	52 aa		6.15	□□□□□ -1.42
YBX3-215	ENST00000544504	PCP4L1	A6NKN8	68 aa		6.14	□□□□□ -1.43
YBX3-215	ENST00000544504	MUSTN1	Q8IVN3	82 aa		6.14	□□□□□ -1.43
YBX3-215	ENST00000544504	SND1-IT1	Q9HBX3	110 aa		6.14	□□□□□ -1.43
YBX3-215	ENST00000544504	NDUFC2	O95298	119 aa		6.13	□□□□□ -1.43
YBX3-215	ENST00000544504		Q6ZRP5	223 aa		6.13	□□□□□ -1.43
YBX3-215	ENST00000544504	DAND5	Q8N907	189 aa		6.13	□□□□□ -1.43
YBX3-215	ENST00000544504		A6NDN8	102 aa		6.12	□□□□□ -1.43
YBX3-215	ENST00000544504	GAGE2E	Q4V326	116 aa		6.12	□□□□□ -1.43
YBX3-215	ENST00000544504	GAGE2D	Q9UEU5	116 aa		6.12	□□□□□ -1.43
YBX3-215	ENST00000544504	NPC2	P61916	151 aa		6.11	□□□□□ -1.43
YBX3-215	ENST00000544504	GAGE2B	Q13066	116 aa		6.11	□□□□□ -1.43
YBX3-215	ENST00000544504	BVES-AS1	Q5T3Y7	98 aa		6.11	□□□□□ -1.43
YBX3-215	ENST00000544504		Q5VSD8	79 aa		6.11	□□□□□ -1.43
YBX3-215	ENST00000544504	SDIM1	Q6ZPB5	146 aa		6.11	□□□□□ -1.43
YBX3-215	ENST00000544504	PLA2G2D	Q9UNK4	145 aa		6.11	□□□□□ -1.43
YBX3-215	ENST00000544504		A4D1N5	150 aa		6.1	□□□□□ -1.43
YBX3-215	ENST00000544504	HINT1	P49773	126 aa	Predicted RBP	6.1	□□□□□ -1.43
YBX3-215	ENST00000544504	SOSTDC1	Q6X4U4	206 aa		6.1	□□□□□ -1.43
YBX3-215	ENST00000544504	XAGE1A	Q9HD64	81 aa		6.1	□□□□□ -1.43
YBX3-215	ENST00000544504	CBY1	Q9Y3M2	126 aa		6.1	□□□□□ -1.43
YBX3-215	ENST00000544504		A0A096LNI7	61 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	TRAV13-2	A0A0B4J235	113 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	TRBV10-2	A0A0K0K1G8	114 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504		J3QL48	77 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	FXYD2	P54710	66 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	KRTAP10-2	P60368	255 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	NKAPP1	Q8N9T2	125 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	RAB37	Q96AX2	223 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504	RNF213	Q63HN8	5207 aa		6.09	□□□□□ -1.43
YBX3-215	ENST00000544504		A0A0B4J2C4	111 aa		6.08	□□□□□ -1.44
YBX3-215	ENST00000544504	IGKV2-24	A0A0C4DH68	120 aa		6.08	□□□□□ -1.44
YBX3-215	ENST00000544504	IGLV5-37	A0A075B6J1	123 aa		6.07	□□□□□ -1.44
YBX3-215	ENST00000544504		M0R378	163 aa		6.07	□□□□□ -1.44
YBX3-215	ENST00000544504	BATF	Q16520	125 aa		6.07	□□□□□ -1.44
YBX3-215	ENST00000544504	C9orf129	Q5T035	196 aa	Known RBP	6.07	□□□□□ -1.44
YBX3-215	ENST00000544504	DPH3	Q96FX2	82 aa		6.07	□□□□□ -1.44
YBX3-215	ENST00000544504	NHP2	Q9NX24	153 aa	Known RBP	6.07	□□□□□ -1.44
YBX3-215	ENST00000544504		A0A1B0GWB2	263 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	EIF4EBP3	O60516	100 aa	Predicted RBP	6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	VPREB1	P12018	145 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	XG	P55808	180 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	LBH	Q53QV2	105 aa	Predicted RBP	6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	S100A7L2	Q5SY68	101 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	SPACA4	Q8TDM5	124 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	TMEM126A	Q9H061	195 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	PRO1854	Q9UHT4	67 aa		6.06	□□□□□ -1.44
YBX3-215	ENST00000544504	FLG2	Q5D862	2391 aa	Predicted RBP	6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	CFC1B	P0CG36	223 aa		6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	CFC1	P0CG37	223 aa		6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	LINC01620	Q4KN68	170 aa		6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	COL5A1-AS1	Q5SY13	56 aa		6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	SERTAD4-AS1	Q5TG53	156 aa		6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	SNHG12	Q9BXW3	62 aa		6.05	□□□□□ -1.44
YBX3-215	ENST00000544504	NCR3	O14931	201 aa		6.04	□□□□□ -1.44
YBX3-215	ENST00000544504	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	6.04	□□□□□ -1.44
YBX3-215	ENST00000544504	OR13C6P	Q8NH95	151 aa		6.04	□□□□□ -1.44
YBX3-215	ENST00000544504	IGKV2-28	A0A075B6P5	120 aa		6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	FAM229A	H3BQW9	127 aa		6.03	□□□□□ -1.44
YBX3-215	ENST00000544504		M0QXV9	152 aa		6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	IGKV2D-28	P01615	120 aa		6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	CHTF8	P0CG12	524 aa		6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	RPL13A	P40429	203 aa	Known RBP	6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	MRPL55	Q7Z7F7	128 aa	Known RBP	6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	C22orf24	Q9Y442	160 aa		6.03	□□□□□ -1.44
YBX3-215	ENST00000544504	FUS	P35637	526 aa	Known RBP eCLIP	6.02	□□□□□ -1.45
YBX3-215	ENST00000544504		Q6ZSA8	131 aa		6.02	□□□□□ -1.45
YBX3-215	ENST00000544504	LINC00337	Q8N6G1	96 aa		6.02	□□□□□ -1.45
YBX3-215	ENST00000544504	PLAC8	Q9NZF1	115 aa		6.02	□□□□□ -1.45
YBX3-215	ENST00000544504	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	6.02	□□□□□ -1.45
YBX3-215	ENST00000544504	LRP1	Q07954	4544 aa	Known RBP	6.01	□□□□□ -1.45
YBX3-215	ENST00000544504		A0A087WYN8	130 aa		6.01	□□□□□ -1.45
YBX3-215	ENST00000544504	FAM168B	A1KXE4	195 aa		6.01	□□□□□ -1.45
YBX3-215	ENST00000544504	IGLV6-57	P01721	117 aa		6.01	□□□□□ -1.45
YBX3-215	ENST00000544504	PRR3	P79522	188 aa	Known RBP	6.01	□□□□□ -1.45
YBX3-215	ENST00000544504		Q1RN00	199 aa		6.01	□□□□□ -1.45
YBX3-215	ENST00000544504		Q8NDZ9	215 aa		6.01	□□□□□ -1.45
YBX3-215	ENST00000544504		A0A1W2PNN7	141 aa		6	□□□□□ -1.45
YBX3-215	ENST00000544504		K7ERJ3	54 aa		6	□□□□□ -1.45

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