RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TRAV9-1A0A075B6T8 112 aa8.7□□□□□ -1.02
CLSTN3-213ENST00000541953 A0A0U1RRA0 63 aa8.7□□□□□ -1.02
CLSTN3-213ENST00000541953 ASB16-AS1Q495Z4 193 aa8.7□□□□□ -1.02
CLSTN3-213ENST00000541953 LINC01549A6NIU2 74 aa8.69□□□□□ -1.02
CLSTN3-213ENST00000541953 COX17Q14061 63 aa8.69□□□□□ -1.02
CLSTN3-213ENST00000541953 SMCO4Q9NRQ5 59 aa8.69□□□□□ -1.02
CLSTN3-213ENST00000541953 SPAG11AQ6PDA7 123 aa8.68□□□□□ -1.02
CLSTN3-213ENST00000541953 FP248Q71RG6 208 aaPredicted RBP8.68□□□□□ -1.02
CLSTN3-213ENST00000541953 FABP9Q0Z7S8 132 aa8.67□□□□□ -1.02
CLSTN3-213ENST00000541953 TMEM218A2RU14 115 aa8.66□□□□□ -1.02
CLSTN3-213ENST00000541953 CLLU1Q5K131 121 aa8.66□□□□□ -1.02
CLSTN3-213ENST00000541953 KRTAP4-16G5E9R7 235 aaPredicted RBP8.65□□□□□ -1.02
CLSTN3-213ENST00000541953 NCR3O14931 201 aa8.65□□□□□ -1.02
CLSTN3-213ENST00000541953 TMEM170BQ5T4T1 132 aa8.65□□□□□ -1.02
CLSTN3-213ENST00000541953 LCE2DQ5TA82 110 aaPredicted RBP8.65□□□□□ -1.02
CLSTN3-213ENST00000541953 C18orf32Q8TCD1 76 aa8.65□□□□□ -1.02
CLSTN3-213ENST00000541953 SMCR5Q8TEV8 140 aa8.65□□□□□ -1.02
CLSTN3-213ENST00000541953 SPRR1AP35321 89 aa8.64□□□□□ -1.03
CLSTN3-213ENST00000541953 LINC00158P58513 81 aa8.64□□□□□ -1.03
CLSTN3-213ENST00000541953 BAGE3Q86Y29 109 aa8.64□□□□□ -1.03
CLSTN3-213ENST00000541953 LINC00337Q8N6G1 96 aa8.64□□□□□ -1.03
CLSTN3-213ENST00000541953 HBDP02042 147 aa8.63□□□□□ -1.03
CLSTN3-213ENST00000541953 PRYO14603 147 aa8.62□□□□□ -1.03
CLSTN3-213ENST00000541953 SMIM13P0DJ93 91 aa8.62□□□□□ -1.03
CLSTN3-213ENST00000541953 S100PP25815 95 aa8.62□□□□□ -1.03
CLSTN3-213ENST00000541953 LINC01547P58512 204 aaPredicted RBP8.62□□□□□ -1.03
CLSTN3-213ENST00000541953 LCE2CQ5TA81 110 aa8.62□□□□□ -1.03
CLSTN3-213ENST00000541953 ERC2-IT1O76042 136 aa8.61□□□□□ -1.03
CLSTN3-213ENST00000541953 LINC00614P0C842 121 aa8.61□□□□□ -1.03
CLSTN3-213ENST00000541953 LINC00483Q53H64 154 aa8.61□□□□□ -1.03
CLSTN3-213ENST00000541953 C4orf48Q5BLP8 95 aa8.61□□□□□ -1.03
CLSTN3-213ENST00000541953 BOD1L2Q8IYS8 172 aa8.61□□□□□ -1.03
CLSTN3-213ENST00000541953 ZNF706Q9Y5V0 76 aaPredicted RBP8.61□□□□□ -1.03
CLSTN3-213ENST00000541953 TMEM223A0PJW6 202 aa8.6□□□□□ -1.03
CLSTN3-213ENST00000541953 Q8N377 158 aa8.6□□□□□ -1.03
CLSTN3-213ENST00000541953 KCNQ1DNQ9H478 68 aa8.6□□□□□ -1.03
CLSTN3-213ENST00000541953 TRBV10-3A0A0K0K1G6 114 aa8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 IFITM2Q01629 132 aa8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 MOBPQ13875 183 aa8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 UQCC3Q6UW78 93 aa8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 MIR7-3HGQ8N6C7 128 aa8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 SEC11CQ9BY50 192 aa8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 CHTOPQ9Y3Y2 248 aaKnown RBP8.59□□□□□ -1.03
CLSTN3-213ENST00000541953 SPINK1P00995 79 aa8.58□□□□□ -1.04
CLSTN3-213ENST00000541953 KRTAP19-2Q3LHN2 52 aa8.58□□□□□ -1.04
CLSTN3-213ENST00000541953 COX19Q49B96 90 aa8.58□□□□□ -1.04
CLSTN3-213ENST00000541953 GAGE2AQ6NT46 116 aa8.58□□□□□ -1.04
CLSTN3-213ENST00000541953 CRCT1Q9UGL9 99 aa8.58□□□□□ -1.04
CLSTN3-213ENST00000541953 IGLV9-49A0A0B4J1Y8 123 aa8.57□□□□□ -1.04
CLSTN3-213ENST00000541953 SFTA2Q6UW10 78 aa8.57□□□□□ -1.04
CLSTN3-213ENST00000541953 ETDCA0A1B0GVM5 59 aa8.56□□□□□ -1.04
CLSTN3-213ENST00000541953 B5MCH6 92 aa8.56□□□□□ -1.04
CLSTN3-213ENST00000541953 SEC61BP60468 96 aaKnown RBP8.56□□□□□ -1.04
CLSTN3-213ENST00000541953 Q9BRP9 147 aa8.56□□□□□ -1.04
CLSTN3-213ENST00000541953 MEIG1Q5JSS6 88 aa8.55□□□□□ -1.04
CLSTN3-213ENST00000541953 XP32Q5T750 250 aa8.55□□□□□ -1.04
CLSTN3-213ENST00000541953 RPS10P5Q9NQ39 176 aa8.55□□□□□ -1.04
CLSTN3-213ENST00000541953 TRAPPC1Q9Y5R8 145 aa8.55□□□□□ -1.04
CLSTN3-213ENST00000541953 C10orf91Q5T1B1 145 aa8.54□□□□□ -1.04
CLSTN3-213ENST00000541953 TSPEAR-AS2P59090 65 aa8.53□□□□□ -1.04
CLSTN3-213ENST00000541953 COMMD7Q86VX2 200 aa8.52□□□□□ -1.05
CLSTN3-213ENST00000541953 RHEBQ15382 184 aa8.51□□□□□ -1.05
CLSTN3-213ENST00000541953 TRAV12-1A0A0B4J245 112 aa8.5□□□□□ -1.05
CLSTN3-213ENST00000541953 RPS29P62273 56 aaKnown RBP8.5□□□□□ -1.05
CLSTN3-213ENST00000541953 IFI27L1Q96BM0 104 aa8.5□□□□□ -1.05
CLSTN3-213ENST00000541953 NDUFA12Q9UI09 145 aa8.5□□□□□ -1.05
CLSTN3-213ENST00000541953 ATP6V1G1O75348 118 aa8.49□□□□□ -1.05
CLSTN3-213ENST00000541953 MT1HP80294 61 aa8.49□□□□□ -1.05
CLSTN3-213ENST00000541953 Q6ZRX8 168 aa8.48□□□□□ -1.05
CLSTN3-213ENST00000541953 SSBP3-AS1Q7Z2R9 100 aa8.48□□□□□ -1.05
CLSTN3-213ENST00000541953 SLC25A20O43772 301 aa8.47□□□□□ -1.05
CLSTN3-213ENST00000541953 DDTP30046 118 aa8.47□□□□□ -1.05
CLSTN3-213ENST00000541953 HERV-K104P63124 156 aa8.47□□□□□ -1.05
CLSTN3-213ENST00000541953 FAM19A2Q8N3H0 131 aa8.47□□□□□ -1.05
CLSTN3-213ENST00000541953 ST20-AS1Q8NBB2 130 aa8.46□□□□□ -1.06
CLSTN3-213ENST00000541953 FLGP20930 4061 aaPredicted RBP8.45□□□□□ -1.06
CLSTN3-213ENST00000541953 LOC107984156A0A0G2JMH3 177 aa8.45□□□□□ -1.06
CLSTN3-213ENST00000541953 EIF4EBP3O60516 100 aaPredicted RBP8.45□□□□□ -1.06
CLSTN3-213ENST00000541953 ARL17AQ8IVW1 177 aa8.45□□□□□ -1.06
CLSTN3-213ENST00000541953 C9orf153Q5TBE3 101 aa8.44□□□□□ -1.06
CLSTN3-213ENST00000541953 MYMXA0A1B0GTQ4 84 aa8.43□□□□□ -1.06
CLSTN3-213ENST00000541953 H0Y8G0 127 aa8.43□□□□□ -1.06
CLSTN3-213ENST00000541953 PCOTHQ58A44 107 aa8.43□□□□□ -1.06
CLSTN3-213ENST00000541953 SOSTDC1Q6X4U4 206 aa8.43□□□□□ -1.06
CLSTN3-213ENST00000541953 YPEL4Q96NS1 127 aa8.43□□□□□ -1.06
CLSTN3-213ENST00000541953 TRBV10-2A0A0K0K1G8 114 aa8.42□□□□□ -1.06
CLSTN3-213ENST00000541953 IGLV6-57P01721 117 aa8.42□□□□□ -1.06
CLSTN3-213ENST00000541953 CHCHD1Q96BP2 118 aaKnown RBP8.42□□□□□ -1.06
CLSTN3-213ENST00000541953 LEPROTO15243 131 aa8.4□□□□□ -1.06
CLSTN3-213ENST00000541953 LINC00310P59036 64 aa8.4□□□□□ -1.06
CLSTN3-213ENST00000541953 MAP1LC3CQ9BXW4 147 aa8.4□□□□□ -1.06
CLSTN3-213ENST00000541953 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
CLSTN3-213ENST00000541953 TRAV23DV6A0A075B6W5 121 aa8.39□□□□□ -1.07
CLSTN3-213ENST00000541953 C9orf92A6NGG3 77 aa8.39□□□□□ -1.07
CLSTN3-213ENST00000541953 LINC00587B1AMM8 73 aa8.39□□□□□ -1.07
CLSTN3-213ENST00000541953 NPC2P61916 151 aa8.39□□□□□ -1.07
CLSTN3-213ENST00000541953 IGLV8-61A0A075B6I0 122 aa8.38□□□□□ -1.07
CLSTN3-213ENST00000541953 APOC3P02656 99 aa8.38□□□□□ -1.07
CLSTN3-213ENST00000541953 LORP23490 312 aaPredicted RBP8.38□□□□□ -1.07
CLSTN3-213ENST00000541953 S100A12P80511 92 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms