RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MUC4Q99102 2169 aa9.61□□□□□ -0.87
USP3-204ENST00000540797 DEFB116Q30KQ4 102 aa9.61□□□□□ -0.87
USP3-204ENST00000540797 CEP350Q5VT06 3117 aa9.61□□□□□ -0.87
USP3-204ENST00000540797 XGP55808 180 aa9.61□□□□□ -0.87
USP3-204ENST00000540797 LINC01547P58512 204 aaPredicted RBP9.6□□□□□ -0.87
USP3-204ENST00000540797 C19orf73Q9NVV2 129 aa9.6□□□□□ -0.87
USP3-204ENST00000540797 PHF5AQ7RTV0 110 aaKnown RBP9.6□□□□□ -0.87
USP3-204ENST00000540797 SPATA3Q8NHX4 192 aa9.6□□□□□ -0.87
USP3-204ENST00000540797 DNAH10OSP0CZ25 163 aa9.6□□□□□ -0.87
USP3-204ENST00000540797 RETNLBQ9BQ08 111 aa9.6□□□□□ -0.87
USP3-204ENST00000540797 MPLKIPQ8TAP9 179 aa9.59□□□□□ -0.87
USP3-204ENST00000540797 KIAA0087Q14695 138 aa9.59□□□□□ -0.88
USP3-204ENST00000540797 LINC00208Q96KT6 92 aa9.57□□□□□ -0.88
USP3-204ENST00000540797 GVQW2A0A096LPI5 108 aaPredicted RBP9.57□□□□□ -0.88
USP3-204ENST00000540797 PRR15LQ9BU68 103 aa9.57□□□□□ -0.88
USP3-204ENST00000540797 MOBPQ13875 183 aa9.56□□□□□ -0.88
USP3-204ENST00000540797 K7ERS5 55 aa9.56□□□□□ -0.88
USP3-204ENST00000540797 KRTAP1-1Q07627 177 aa9.56□□□□□ -0.88
USP3-204ENST00000540797 SERP1Q9Y6X1 66 aa9.56□□□□□ -0.88
USP3-204ENST00000540797 Q6ZRP5 223 aa9.55□□□□□ -0.88
USP3-204ENST00000540797 A0A087WVE0 104 aa9.55□□□□□ -0.88
USP3-204ENST00000540797 ATP5EP56381 51 aaPredicted RBP9.55□□□□□ -0.88
USP3-204ENST00000540797 COX7CP15954 63 aa9.55□□□□□ -0.88
USP3-204ENST00000540797 SPTSSBQ8NFR3 76 aa9.54□□□□□ -0.88
USP3-204ENST00000540797 SPACA4Q8TDM5 124 aa9.54□□□□□ -0.88
USP3-204ENST00000540797 SOSTDC1Q6X4U4 206 aa9.53□□□□□ -0.88
USP3-204ENST00000540797 CHTF8P0CG12 524 aa9.53□□□□□ -0.88
USP3-204ENST00000540797 TRAV7A0A075B6U4 112 aa9.52□□□□□ -0.88
USP3-204ENST00000540797 CHD7Q9P2D1 2997 aa9.51□□□□□ -0.89
USP3-204ENST00000540797 TRBV7-6A0A0J9YX20 115 aa9.51□□□□□ -0.89
USP3-204ENST00000540797 MGAM2Q2M2H8 2515 aa9.51□□□□□ -0.89
USP3-204ENST00000540797 ELOF1P60002 83 aaKnown RBP9.51□□□□□ -0.89
USP3-204ENST00000540797 CRYGAP11844 174 aa9.51□□□□□ -0.89
USP3-204ENST00000540797 EPM2AB3EWF7 344 aa9.5□□□□□ -0.89
USP3-204ENST00000540797 GIG44P09565 113 aaPredicted RBP9.5□□□□□ -0.89
USP3-204ENST00000540797 BRK1Q8WUW1 75 aa9.5□□□□□ -0.89
USP3-204ENST00000540797 Q6ZRX8 168 aa9.5□□□□□ -0.89
USP3-204ENST00000540797 LINC00846Q9NV44 126 aa9.49□□□□□ -0.89
USP3-204ENST00000540797 Q6Q795 121 aa9.49□□□□□ -0.89
USP3-204ENST00000540797 V9GYY9 64 aa9.49□□□□□ -0.89
USP3-204ENST00000540797 HELZ2Q9BYK8 2649 aaKnown RBP9.48□□□□□ -0.89
USP3-204ENST00000540797 HCG22E2RYF7 251 aa9.48□□□□□ -0.89
USP3-204ENST00000540797 TM2D3Q9BRN9 247 aa9.48□□□□□ -0.89
USP3-204ENST00000540797 PCOTHQ58A44 107 aa9.47□□□□□ -0.89
USP3-204ENST00000540797 TYMSOSQ8TAI1 123 aa9.47□□□□□ -0.89
USP3-204ENST00000540797 H0Y9P7 68 aa9.46□□□□□ -0.9
USP3-204ENST00000540797 BCE1O60756 84 aa9.46□□□□□ -0.9
USP3-204ENST00000540797 CCDC179H3BU77 68 aa9.45□□□□□ -0.9
USP3-204ENST00000540797 PLA2G1BP04054 148 aaKnown RBP9.45□□□□□ -0.9
USP3-204ENST00000540797 USP24Q9UPU5 2620 aa9.45□□□□□ -0.9
USP3-204ENST00000540797 Q8NBF4 154 aa9.45□□□□□ -0.9
USP3-204ENST00000540797 FAM218AQ96MZ4 157 aa9.44□□□□□ -0.9
USP3-204ENST00000540797 FAM168BA1KXE4 195 aa9.43□□□□□ -0.9
USP3-204ENST00000540797 ST20-AS1Q8NBB2 130 aa9.43□□□□□ -0.9
USP3-204ENST00000540797 RPL37AP61513 92 aaKnown RBP9.42□□□□□ -0.9
USP3-204ENST00000540797 FLNAP21333 2647 aaKnown RBP9.42□□□□□ -0.9
USP3-204ENST00000540797 LINC00612Q8N6U2 182 aa9.42□□□□□ -0.9
USP3-204ENST00000540797 LINC00476Q8WZB0 136 aa9.42□□□□□ -0.9
USP3-204ENST00000540797 VPREB1P12018 145 aa9.42□□□□□ -0.9
USP3-204ENST00000540797 CXCL6P80162 114 aa9.41□□□□□ -0.9
USP3-204ENST00000540797 PRR34Q9NV39 138 aa9.4□□□□□ -0.9
USP3-204ENST00000540797 IGKV2D-30A0A075B6S6 120 aa9.4□□□□□ -0.9
USP3-204ENST00000540797 SPINK1P00995 79 aa9.4□□□□□ -0.9
USP3-204ENST00000540797 IGKV2-30P06310 120 aa9.4□□□□□ -0.9
USP3-204ENST00000540797 CHD9Q3L8U1 2897 aa9.4□□□□□ -0.91
USP3-204ENST00000540797 ITPR3Q14573 2671 aa9.39□□□□□ -0.91
USP3-204ENST00000540797 SVIPQ8NHG7 77 aa9.39□□□□□ -0.91
USP3-204ENST00000540797 A6NED7 52 aa9.38□□□□□ -0.91
USP3-204ENST00000540797 SERTAD4-AS1Q5TG53 156 aa9.38□□□□□ -0.91
USP3-204ENST00000540797 J3QL48 77 aa9.37□□□□□ -0.91
USP3-204ENST00000540797 C5orf42Q9H799 3197 aa9.37□□□□□ -0.91
USP3-204ENST00000540797 TRBV7-7A0A0K0K1E9 115 aa9.37□□□□□ -0.91
USP3-204ENST00000540797 A0A087WTM6 91 aa9.37□□□□□ -0.91
USP3-204ENST00000540797 A0A1B0GW54 56 aa9.36□□□□□ -0.91
USP3-204ENST00000540797 C15orf56Q8N910 161 aa9.36□□□□□ -0.91
USP3-204ENST00000540797 IGLV6-57P01721 117 aa9.36□□□□□ -0.91
USP3-204ENST00000540797 LITAFQ99732 161 aa9.36□□□□□ -0.91
USP3-204ENST00000540797 hDV103S1A0JD37 113 aa9.35□□□□□ -0.91
USP3-204ENST00000540797 IGLV1-50A0A075B6I6 118 aa9.35□□□□□ -0.91
USP3-204ENST00000540797 SMIM29Q86T20 159 aa9.34□□□□□ -0.91
USP3-204ENST00000540797 C1orf64Q8NEQ6 169 aa9.34□□□□□ -0.91
USP3-204ENST00000540797 APLNQ9ULZ1 77 aa9.34□□□□□ -0.91
USP3-204ENST00000540797 TMEM254Q8TBM7 123 aa9.34□□□□□ -0.91
USP3-204ENST00000540797 CFAP46Q8IYW2 2715 aa9.34□□□□□ -0.91
USP3-204ENST00000540797 HTTP42858 3142 aa9.34□□□□□ -0.91
USP3-204ENST00000540797 Q6ZQT0 140 aa9.33□□□□□ -0.92
USP3-204ENST00000540797 RANBP2P49792 3224 aaKnown RBP9.32□□□□□ -0.92
USP3-204ENST00000540797 LINC00313P59037 77 aa9.31□□□□□ -0.92
USP3-204ENST00000540797 TP53AIP1Q9HCN2 124 aa9.31□□□□□ -0.92
USP3-204ENST00000540797 KCNQ1DNQ9H478 68 aa9.31□□□□□ -0.92
USP3-204ENST00000540797 ATRQ13535 2644 aa9.31□□□□□ -0.92
USP3-204ENST00000540797 LOC110117498A0A087WWA1 95 aa9.31□□□□□ -0.92
USP3-204ENST00000540797 SMCPP49901 116 aaPredicted RBP9.31□□□□□ -0.92
USP3-204ENST00000540797 MAST4O15021 2626 aa9.3□□□□□ -0.92
USP3-204ENST00000540797 C9orf163Q8N9P6 203 aa9.3□□□□□ -0.92
USP3-204ENST00000540797 LINC00336Q6ZUF6 198 aa9.29□□□□□ -0.92
USP3-204ENST00000540797 SMIM26A0A096LP01 95 aa9.28□□□□□ -0.92
USP3-204ENST00000540797 SMR3BP02814 79 aaPredicted RBP9.27□□□□□ -0.93
USP3-204ENST00000540797 C7orf65Q6ZTY9 151 aa9.27□□□□□ -0.93
USP3-204ENST00000540797 C9orf129Q5T035 196 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms