RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 COX17Q14061 63 aa9.1□□□□□ -0.95
UBE3B-212ENST00000540230 HSPB8Q9UJY1 196 aa9.1□□□□□ -0.95
UBE3B-212ENST00000540230 A0A0U1RRA0 63 aa9.1□□□□□ -0.95
UBE3B-212ENST00000540230 VPREB1P12018 145 aa9.1□□□□□ -0.95
UBE3B-212ENST00000540230 TSPEAR-AS2P59090 65 aa9.1□□□□□ -0.95
UBE3B-212ENST00000540230 SFTA2Q6UW10 78 aa9.09□□□□□ -0.95
UBE3B-212ENST00000540230 NKAPP1Q8N9T2 125 aa9.09□□□□□ -0.95
UBE3B-212ENST00000540230 KRTAP1-4P0C5Y4 121 aa9.08□□□□□ -0.96
UBE3B-212ENST00000540230 ZNF861PO60384 105 aa9.07□□□□□ -0.96
UBE3B-212ENST00000540230 SMIM13P0DJ93 91 aa9.07□□□□□ -0.96
UBE3B-212ENST00000540230 LINC00158P58513 81 aa9.07□□□□□ -0.96
UBE3B-212ENST00000540230 IGKV2-28A0A075B6P5 120 aa9.06□□□□□ -0.96
UBE3B-212ENST00000540230 IGKV2D-28P01615 120 aa9.06□□□□□ -0.96
UBE3B-212ENST00000540230 PRR26Q8N8Z3 221 aa9.06□□□□□ -0.96
UBE3B-212ENST00000540230 BCE1O60756 84 aa9.05□□□□□ -0.96
UBE3B-212ENST00000540230 DPM2O94777 84 aa9.05□□□□□ -0.96
UBE3B-212ENST00000540230 PLNP26678 52 aa9.05□□□□□ -0.96
UBE3B-212ENST00000540230 NDUFA12Q9UI09 145 aa9.05□□□□□ -0.96
UBE3B-212ENST00000540230 IGKCP01834 107 aa9.05□□□□□ -0.96
UBE3B-212ENST00000540230 LEPROTO15243 131 aa9.04□□□□□ -0.96
UBE3B-212ENST00000540230 MEIG1Q5JSS6 88 aa9.04□□□□□ -0.96
UBE3B-212ENST00000540230 MAP1LC3CQ9BXW4 147 aa9.04□□□□□ -0.96
UBE3B-212ENST00000540230 IGLV1-50A0A075B6I6 118 aa9.03□□□□□ -0.96
UBE3B-212ENST00000540230 MIR7-3HGQ8N6C7 128 aa9.03□□□□□ -0.96
UBE3B-212ENST00000540230 HERV-K104P63124 156 aa9.02□□□□□ -0.97
UBE3B-212ENST00000540230 RPL24P83731 157 aaKnown RBP9.02□□□□□ -0.97
UBE3B-212ENST00000540230 KRTAP13-1Q8IUC0 172 aa9.02□□□□□ -0.97
UBE3B-212ENST00000540230 UBR4Q5T4S7 5183 aa9.02□□□□□ -0.97
UBE3B-212ENST00000540230 MYMXA0A1B0GTQ4 84 aa9.01□□□□□ -0.97
UBE3B-212ENST00000540230 TMEM238C9JI98 176 aa9.01□□□□□ -0.97
UBE3B-212ENST00000540230 SYS1-DBNDD2H3BUS1 97 aa9.01□□□□□ -0.97
UBE3B-212ENST00000540230 J3QQQ9 107 aa9.01□□□□□ -0.97
UBE3B-212ENST00000540230 RPL28P46779 137 aaKnown RBP9□□□□□ -0.97
UBE3B-212ENST00000540230 PLEKHB2Q96CS7 222 aa9□□□□□ -0.97
UBE3B-212ENST00000540230 DAND5Q8N907 189 aa9□□□□□ -0.97
UBE3B-212ENST00000540230 TMEM126AQ9H061 195 aa9□□□□□ -0.97
UBE3B-212ENST00000540230 LRP2P98164 4655 aa8.99□□□□□ -0.97
UBE3B-212ENST00000540230 M0R378 163 aa8.99□□□□□ -0.97
UBE3B-212ENST00000540230 HERVK_113P61574 105 aa8.99□□□□□ -0.97
UBE3B-212ENST00000540230 COA6Q5JTJ3 125 aaKnown RBP8.99□□□□□ -0.97
UBE3B-212ENST00000540230 ATP6V1G1O75348 118 aa8.98□□□□□ -0.97
UBE3B-212ENST00000540230 UBE2AP49459 152 aa8.98□□□□□ -0.97
UBE3B-212ENST00000540230 PRLHP81277 87 aa8.98□□□□□ -0.97
UBE3B-212ENST00000540230 BOD1L2Q8IYS8 172 aa8.98□□□□□ -0.97
UBE3B-212ENST00000540230 NCR3O14931 201 aa8.97□□□□□ -0.97
UBE3B-212ENST00000540230 LINC01545Q5VT33 79 aa8.97□□□□□ -0.97
UBE3B-212ENST00000540230 E9PLD3 99 aa8.96□□□□□ -0.97
UBE3B-212ENST00000540230 C3orf79P0CE67 100 aa8.96□□□□□ -0.97
UBE3B-212ENST00000540230 LGALS3P17931 250 aaKnown RBP8.96□□□□□ -0.97
UBE3B-212ENST00000540230 A0A087X002 238 aa8.95□□□□□ -0.98
UBE3B-212ENST00000540230 LINC00587B1AMM8 73 aa8.95□□□□□ -0.98
UBE3B-212ENST00000540230 FAM19A1Q7Z5A9 133 aa8.95□□□□□ -0.98
UBE3B-212ENST00000540230 NMUP48645 174 aa8.95□□□□□ -0.98
UBE3B-212ENST00000540230 PET117Q6UWS5 81 aa8.95□□□□□ -0.98
UBE3B-212ENST00000540230 ANAPC11Q9NYG5 84 aa8.95□□□□□ -0.98
UBE3B-212ENST00000540230 LPAP08519 4548 aa8.92□□□□□ -0.98
UBE3B-212ENST00000540230 LOC107984156A0A0G2JMH3 177 aa8.92□□□□□ -0.98
UBE3B-212ENST00000540230 A0A0J9YXY3 114 aa8.92□□□□□ -0.98
UBE3B-212ENST00000540230 EIF4EBP3O60516 100 aaPredicted RBP8.92□□□□□ -0.98
UBE3B-212ENST00000540230 KRTDAPP60985 99 aa8.92□□□□□ -0.98
UBE3B-212ENST00000540230 ARL17AQ8IVW1 177 aa8.92□□□□□ -0.98
UBE3B-212ENST00000540230 IGKV2D-26A0A0A0MRZ7 120 aa8.91□□□□□ -0.98
UBE3B-212ENST00000540230 RPL13AP40429 203 aaKnown RBP8.91□□□□□ -0.98
UBE3B-212ENST00000540230 ADAMTSL4-AS1Q5T5F5 129 aa8.91□□□□□ -0.98
UBE3B-212ENST00000540230 SOSTDC1Q6X4U4 206 aa8.91□□□□□ -0.98
UBE3B-212ENST00000540230 TRBV10-3A0A0K0K1G6 114 aa8.9□□□□□ -0.98
UBE3B-212ENST00000540230 NPC2P61916 151 aa8.9□□□□□ -0.98
UBE3B-212ENST00000540230 TTTY13Q9BZ97 58 aa8.9□□□□□ -0.98
UBE3B-212ENST00000540230 S100A1P23297 94 aa8.9□□□□□ -0.99
UBE3B-212ENST00000540230 PRYO14603 147 aa8.89□□□□□ -0.99
UBE3B-212ENST00000540230 SPRR1AP35321 89 aa8.89□□□□□ -0.99
UBE3B-212ENST00000540230 KRTAP13-2Q52LG2 175 aa8.89□□□□□ -0.99
UBE3B-212ENST00000540230 LITAFQ99732 161 aa8.88□□□□□ -0.99
UBE3B-212ENST00000540230 HIGD2AQ9BW72 106 aa8.88□□□□□ -0.99
UBE3B-212ENST00000540230 KCNQ1DNQ9H478 68 aa8.88□□□□□ -0.99
UBE3B-212ENST00000540230 KRTAP4-16G5E9R7 235 aaPredicted RBP8.87□□□□□ -0.99
UBE3B-212ENST00000540230 CRYGAP11844 174 aa8.87□□□□□ -0.99
UBE3B-212ENST00000540230 MIEN1Q9BRT3 115 aa8.86□□□□□ -0.99
UBE3B-212ENST00000540230 ATOH7Q8N100 152 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 LINC00337Q8N6G1 96 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 TYMSOSQ8TAI1 123 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 SPANXB1Q9NS25 103 aaPredicted RBP8.85□□□□□ -0.99
UBE3B-212ENST00000540230 TRBV10-2A0A0K0K1G8 114 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 ZNF815PA8K554 130 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 DDTP30046 118 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 ANKRD39Q53RE8 183 aa8.85□□□□□ -0.99
UBE3B-212ENST00000540230 NDUFC2O95298 119 aa8.84□□□□□ -0.99
UBE3B-212ENST00000540230 FAM229BQ4G0N7 80 aa8.83□□□□□ -1
UBE3B-212ENST00000540230 HIST3H2BBQ8N257 126 aa8.83□□□□□ -1
UBE3B-212ENST00000540230 ETDCA0A1B0GVM5 59 aa8.82□□□□□ -1
UBE3B-212ENST00000540230 C20orf202A1L168 122 aa8.82□□□□□ -1
UBE3B-212ENST00000540230 IGLV6-57P01721 117 aa8.82□□□□□ -1
UBE3B-212ENST00000540230 LINC00308Q8TCZ7 52 aa8.82□□□□□ -1
UBE3B-212ENST00000540230 TIMM17BO60830 172 aa8.81□□□□□ -1
UBE3B-212ENST00000540230 TSPAN13O95857 204 aa8.81□□□□□ -1
UBE3B-212ENST00000540230 SMCR5Q8TEV8 140 aa8.81□□□□□ -1
UBE3B-212ENST00000540230 SPRR4Q96PI1 79 aa8.81□□□□□ -1
UBE3B-212ENST00000540230 HIST1H2BLQ99880 126 aa8.81□□□□□ -1
UBE3B-212ENST00000540230 B5MCH6 92 aa8.8□□□□□ -1
UBE3B-212ENST00000540230 C3orf22Q8N5N4 141 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms