RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 REG3AQ06141 175 aa13.83□□□□□ -0.2
TMEM260-203ENST00000539559 GHRHP01286 108 aa13.82□□□□□ -0.2
TMEM260-203ENST00000539559 UNQ6190/PRO20217Q6UXQ8 127 aa13.82□□□□□ -0.2
TMEM260-203ENST00000539559 LINC00612Q8N6U2 182 aa13.82□□□□□ -0.2
TMEM260-203ENST00000539559 HIVEP1P15822 2718 aa13.81□□□□□ -0.2
TMEM260-203ENST00000539559 NDUFC2O95298 119 aa13.8□□□□□ -0.2
TMEM260-203ENST00000539559 OXTP01178 125 aa13.79□□□□□ -0.2
TMEM260-203ENST00000539559 DEFB135Q30KP9 77 aa13.78□□□□□ -0.2
TMEM260-203ENST00000539559 DPH3Q96FX2 82 aa13.78□□□□□ -0.2
TMEM260-203ENST00000539559 LINC00575Q6W349 94 aa13.78□□□□□ -0.2
TMEM260-203ENST00000539559 LAMTOR3Q9UHA4 124 aa13.77□□□□□ -0.2
TMEM260-203ENST00000539559 COX17Q14061 63 aa13.76□□□□□ -0.21
TMEM260-203ENST00000539559 UBL5Q9BZL1 73 aa13.76□□□□□ -0.21
TMEM260-203ENST00000539559 HTN3P15516 51 aa13.76□□□□□ -0.21
TMEM260-203ENST00000539559 TMEM258P61165 79 aa13.75□□□□□ -0.21
TMEM260-203ENST00000539559 SPAG11BQ08648 103 aa13.74□□□□□ -0.21
TMEM260-203ENST00000539559 IGHV4-28A0A0C4DH34 117 aa13.74□□□□□ -0.21
TMEM260-203ENST00000539559 RBM3P98179 157 aaKnown RBP13.74□□□□□ -0.21
TMEM260-203ENST00000539559 Q6ZQT0 140 aa13.73□□□□□ -0.21
TMEM260-203ENST00000539559 CYSRT1A8MQ03 144 aa13.72□□□□□ -0.21
TMEM260-203ENST00000539559 Q6ZQY7 126 aa13.72□□□□□ -0.21
TMEM260-203ENST00000539559 C20orf197Q8N268 126 aa13.72□□□□□ -0.21
TMEM260-203ENST00000539559 CELA1Q9UNI1 258 aa13.72□□□□□ -0.21
TMEM260-203ENST00000539559 XAGE1AQ9HD64 81 aa13.72□□□□□ -0.21
TMEM260-203ENST00000539559 HAMPP81172 84 aa13.71□□□□□ -0.21
TMEM260-203ENST00000539559 LYPD5Q6UWN5 251 aa13.71□□□□□ -0.22
TMEM260-203ENST00000539559 SMIM9A6NGZ8 99 aa13.7□□□□□ -0.22
TMEM260-203ENST00000539559 C9orf66Q5T8R8 295 aa13.7□□□□□ -0.22
TMEM260-203ENST00000539559 KLK12Q9UKR0 248 aa13.7□□□□□ -0.22
TMEM260-203ENST00000539559 ATP5EP2Q5VTU8 51 aa13.69□□□□□ -0.22
TMEM260-203ENST00000539559 RPS28P62857 69 aaKnown RBP13.69□□□□□ -0.22
TMEM260-203ENST00000539559 DAD1P61803 113 aa13.68□□□□□ -0.22
TMEM260-203ENST00000539559 ZNF561-AS1K7EIQ3 104 aa13.67□□□□□ -0.22
TMEM260-203ENST00000539559 TRBV10-3A0A0K0K1G6 114 aa13.67□□□□□ -0.22
TMEM260-203ENST00000539559 TENM1Q9UKZ4 2725 aa13.66□□□□□ -0.22
TMEM260-203ENST00000539559 LINC01547P58512 204 aaPredicted RBP13.66□□□□□ -0.22
TMEM260-203ENST00000539559 SCXQ7RTU7 201 aa13.66□□□□□ -0.22
TMEM260-203ENST00000539559 TRAV10A0A0B4J240 114 aa13.65□□□□□ -0.22
TMEM260-203ENST00000539559 Q6ZVQ6 151 aa13.65□□□□□ -0.22
TMEM260-203ENST00000539559 FLNBO75369 2602 aaKnown RBP13.65□□□□□ -0.22
TMEM260-203ENST00000539559 LYRM9A8MSI8 78 aa13.65□□□□□ -0.22
TMEM260-203ENST00000539559 IGLV6-57P01721 117 aa13.64□□□□□ -0.23
TMEM260-203ENST00000539559 C4orf26Q17RF5 130 aa13.62□□□□□ -0.23
TMEM260-203ENST00000539559 C6orf48Q9UBA6 75 aa13.61□□□□□ -0.23
TMEM260-203ENST00000539559 F8P00451 2351 aa13.61□□□□□ -0.23
TMEM260-203ENST00000539559 LOC110117498A0A087WWA1 95 aa13.61□□□□□ -0.23
TMEM260-203ENST00000539559 ATRQ13535 2644 aa13.59□□□□□ -0.23
TMEM260-203ENST00000539559 HIGD2BQ4VC39 106 aa13.59□□□□□ -0.23
TMEM260-203ENST00000539559 SNURFQ9Y675 71 aa13.59□□□□□ -0.23
TMEM260-203ENST00000539559 A0A0J9YWU9 116 aa13.59□□□□□ -0.23
TMEM260-203ENST00000539559 IGHV4-30-4P0DP06 118 aa13.59□□□□□ -0.23
TMEM260-203ENST00000539559 TRRAPQ9Y4A5 3859 aa13.59□□□□□ -0.23
TMEM260-203ENST00000539559 TEP1Q99973 2627 aaKnown RBP13.58□□□□□ -0.24
TMEM260-203ENST00000539559 C5orf47Q569G3 176 aa13.57□□□□□ -0.24
TMEM260-203ENST00000539559 MUC7Q8TAX7 377 aa13.57□□□□□ -0.24
TMEM260-203ENST00000539559 DIRC1Q969H9 104 aa13.57□□□□□ -0.24
TMEM260-203ENST00000539559 PKD1L1Q8TDX9 2849 aa13.56□□□□□ -0.24
TMEM260-203ENST00000539559 LELP1Q5T871 98 aa13.56□□□□□ -0.24
TMEM260-203ENST00000539559 Q8NAQ8 132 aa13.55□□□□□ -0.24
TMEM260-203ENST00000539559 ZNF73O43830 326 aaPredicted RBP13.55□□□□□ -0.24
TMEM260-203ENST00000539559 HRCT1Q6UXD1 115 aa13.55□□□□□ -0.24
TMEM260-203ENST00000539559 Q5XG85 94 aa13.54□□□□□ -0.24
TMEM260-203ENST00000539559 RMI2Q96E14 147 aa13.54□□□□□ -0.24
TMEM260-203ENST00000539559 PRR34Q9NV39 138 aa13.53□□□□□ -0.24
TMEM260-203ENST00000539559 H7BZZ5 65 aa13.52□□□□□ -0.24
TMEM260-203ENST00000539559 COX7BP24311 80 aa13.52□□□□□ -0.25
TMEM260-203ENST00000539559 TRAV7A0A075B6U4 112 aa13.51□□□□□ -0.25
TMEM260-203ENST00000539559 FAM236DA0A1B0GTK5 79 aa13.51□□□□□ -0.25
TMEM260-203ENST00000539559 FAM236CP0DP71 79 aa13.51□□□□□ -0.25
TMEM260-203ENST00000539559 APOC4P55056 127 aa13.5□□□□□ -0.25
TMEM260-203ENST00000539559 Q8N9L7 120 aa13.49□□□□□ -0.25
TMEM260-203ENST00000539559 TM2D3Q9BRN9 247 aa13.49□□□□□ -0.25
TMEM260-203ENST00000539559 WIPF1O43516 503 aa13.49□□□□□ -0.25
TMEM260-203ENST00000539559 SPART-AS1P0CW21 52 aa13.49□□□□□ -0.25
TMEM260-203ENST00000539559 WFDC10BQ8IUB3 73 aa13.48□□□□□ -0.25
TMEM260-203ENST00000539559 CAMK2N2Q96S95 79 aa13.48□□□□□ -0.25
TMEM260-203ENST00000539559 TRBV7-4A0A0J9YYF1 115 aa13.47□□□□□ -0.25
TMEM260-203ENST00000539559 NDUFC2-KCTD14E9PQ53 114 aa13.47□□□□□ -0.25
TMEM260-203ENST00000539559 KRTAP24-1Q3LI83 254 aa13.47□□□□□ -0.25
TMEM260-203ENST00000539559 ELOF1P60002 83 aaKnown RBP13.46□□□□□ -0.25
TMEM260-203ENST00000539559 VPREB1P12018 145 aa13.46□□□□□ -0.26
TMEM260-203ENST00000539559 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.46□□□□□ -0.26
TMEM260-203ENST00000539559 GVQW2A0A096LPI5 108 aaPredicted RBP13.45□□□□□ -0.26
TMEM260-203ENST00000539559 Q6ZRU5 148 aa13.45□□□□□ -0.26
TMEM260-203ENST00000539559 CXCL6P80162 114 aa13.44□□□□□ -0.26
TMEM260-203ENST00000539559 F8WEM9 126 aa13.44□□□□□ -0.26
TMEM260-203ENST00000539559 MIFP14174 115 aa13.44□□□□□ -0.26
TMEM260-203ENST00000539559 PDE6GP18545 87 aa13.43□□□□□ -0.26
TMEM260-203ENST00000539559 KLKP1Q107X0 134 aa13.4□□□□□ -0.26
TMEM260-203ENST00000539559 RETNQ9HD89 108 aa13.4□□□□□ -0.26
TMEM260-203ENST00000539559 DEFB105AQ8NG35 78 aa13.39□□□□□ -0.27
TMEM260-203ENST00000539559 OXLD1Q5BKU9 147 aa13.37□□□□□ -0.27
TMEM260-203ENST00000539559 LINC00528Q8N1L1 170 aa13.37□□□□□ -0.27
TMEM260-203ENST00000539559 C3orf84H3BNL1 204 aa13.37□□□□□ -0.27
TMEM260-203ENST00000539559 C15orf56Q8N910 161 aa13.37□□□□□ -0.27
TMEM260-203ENST00000539559 M0R378 163 aa13.36□□□□□ -0.27
TMEM260-203ENST00000539559 BPY2O14599 106 aa13.36□□□□□ -0.27
TMEM260-203ENST00000539559 Q6ZRP5 223 aa13.36□□□□□ -0.27
TMEM260-203ENST00000539559 BCE1O60756 84 aa13.36□□□□□ -0.27
TMEM260-203ENST00000539559 KRTAP26-1Q6PEX3 210 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms