RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 LINC01546A6NGU7 62 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 C16orf90A8MZG2 172 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 ABCA12Q86UK0 2595 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 Q6ZRP5 223 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 A0A1B0GU69 56 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 LRRK2Q5S007 2527 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 TYMSOSQ8TAI1 123 aa12.48□□□□□ -0.41
SFSWAP-203ENST00000535236 Q8NBF4 154 aa12.47□□□□□ -0.41
SFSWAP-203ENST00000535236 TET2Q6N021 2002 aaPredicted RBP12.47□□□□□ -0.41
SFSWAP-203ENST00000535236 ACYP2P14621 99 aa12.47□□□□□ -0.41
SFSWAP-203ENST00000535236 ELOF1P60002 83 aaKnown RBP12.46□□□□□ -0.41
SFSWAP-203ENST00000535236 ZFYVE26Q68DK2 2539 aa12.46□□□□□ -0.42
SFSWAP-203ENST00000535236 CHTF8P0CG12 524 aa12.44□□□□□ -0.42
SFSWAP-203ENST00000535236 MUC4Q99102 2169 aa12.44□□□□□ -0.42
SFSWAP-203ENST00000535236 EPM2AB3EWF7 344 aa12.43□□□□□ -0.42
SFSWAP-203ENST00000535236 Q6ZRX8 168 aa12.43□□□□□ -0.42
SFSWAP-203ENST00000535236 LINC00313P59037 77 aa12.43□□□□□ -0.42
SFSWAP-203ENST00000535236 IGLV5-45A0A087WSX0 123 aa12.42□□□□□ -0.42
SFSWAP-203ENST00000535236 LINC00476Q8WZB0 136 aa12.42□□□□□ -0.42
SFSWAP-203ENST00000535236 A0A1B0GW54 56 aa12.42□□□□□ -0.42
SFSWAP-203ENST00000535236 LINC00588Q9Y4M8 146 aa12.42□□□□□ -0.42
SFSWAP-203ENST00000535236 FN1P02751 2386 aaKnown RBP12.4□□□□□ -0.42
SFSWAP-203ENST00000535236 Q8NAQ8 132 aa12.38□□□□□ -0.43
SFSWAP-203ENST00000535236 WWC2-AS2Q96NR7 200 aa12.38□□□□□ -0.43
SFSWAP-203ENST00000535236 FAM218AQ96MZ4 157 aa12.36□□□□□ -0.43
SFSWAP-203ENST00000535236 PLA2G1BP04054 148 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-203ENST00000535236 ST20-AS1Q8NBB2 130 aa12.35□□□□□ -0.43
SFSWAP-203ENST00000535236 GVQW2A0A096LPI5 108 aaPredicted RBP12.35□□□□□ -0.43
SFSWAP-203ENST00000535236 J3QL48 77 aa12.34□□□□□ -0.43
SFSWAP-203ENST00000535236 BCE1O60756 84 aa12.34□□□□□ -0.43
SFSWAP-203ENST00000535236 CDIP1Q9H305 208 aa12.34□□□□□ -0.43
SFSWAP-203ENST00000535236 ATP11AUNQ6ZP68 121 aa12.33□□□□□ -0.44
SFSWAP-203ENST00000535236 Q96NJ1 140 aa12.33□□□□□ -0.44
SFSWAP-203ENST00000535236 Q6ZQT0 140 aa12.33□□□□□ -0.44
SFSWAP-203ENST00000535236 TLN2Q9Y4G6 2542 aa12.32□□□□□ -0.44
SFSWAP-203ENST00000535236 H3BPC8 53 aa12.32□□□□□ -0.44
SFSWAP-203ENST00000535236 USP9XQ93008 2570 aaPredicted RBP12.32□□□□□ -0.44
SFSWAP-203ENST00000535236 SPAG11AQ6PDA7 123 aa12.31□□□□□ -0.44
SFSWAP-203ENST00000535236 LOC110117498A0A087WWA1 95 aa12.3□□□□□ -0.44
SFSWAP-203ENST00000535236 TRAV22A0A0B4J277 110 aa12.3□□□□□ -0.44
SFSWAP-203ENST00000535236 RPL37AP61513 92 aaKnown RBP12.29□□□□□ -0.44
SFSWAP-203ENST00000535236 COL4A2P08572 1712 aa12.26□□□□□ -0.45
SFSWAP-203ENST00000535236 DNAH10OSP0CZ25 163 aa12.26□□□□□ -0.45
SFSWAP-203ENST00000535236 SMCPP49901 116 aaPredicted RBP12.24□□□□□ -0.45
SFSWAP-203ENST00000535236 PTPRBP23467 1997 aa12.23□□□□□ -0.45
SFSWAP-203ENST00000535236 C8orf87E5RJ46 101 aa12.23□□□□□ -0.45
SFSWAP-203ENST00000535236 FAM168BA1KXE4 195 aa12.21□□□□□ -0.45
SFSWAP-203ENST00000535236 IGLV8-61A0A075B6I0 122 aa12.21□□□□□ -0.46
SFSWAP-203ENST00000535236 TRBV7-4A0A0J9YYF1 115 aa12.2□□□□□ -0.46
SFSWAP-203ENST00000535236 LOC101927531A0A1B0GV80 90 aa12.2□□□□□ -0.46
SFSWAP-203ENST00000535236 VPREB1P12018 145 aa12.19□□□□□ -0.46
SFSWAP-203ENST00000535236 COX6B2Q6YFQ2 88 aa12.19□□□□□ -0.46
SFSWAP-203ENST00000535236 ZNF462Q96JM2 2506 aa12.18□□□□□ -0.46
SFSWAP-203ENST00000535236 SETD2Q9BYW2 2564 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-203ENST00000535236 A8MWP4 228 aa12.17□□□□□ -0.46
SFSWAP-203ENST00000535236 COL27A1Q8IZC6 1860 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-203ENST00000535236 IGLV6-57P01721 117 aa12.16□□□□□ -0.46
SFSWAP-203ENST00000535236 TM2D3Q9BRN9 247 aa12.16□□□□□ -0.46
SFSWAP-203ENST00000535236 CHD8Q9HCK8 2581 aa12.16□□□□□ -0.46
SFSWAP-203ENST00000535236 ANKRD11Q6UB99 2663 aaPredicted RBP12.15□□□□□ -0.46
SFSWAP-203ENST00000535236 MRPL34Q9BQ48 92 aaKnown RBP12.15□□□□□ -0.46
SFSWAP-203ENST00000535236 SERTAD4-AS1Q5TG53 156 aa12.14□□□□□ -0.47
SFSWAP-203ENST00000535236 PRO0461Q9UI25 63 aa12.14□□□□□ -0.47
SFSWAP-203ENST00000535236 IGLV1-50A0A075B6I6 118 aa12.13□□□□□ -0.47
SFSWAP-203ENST00000535236 PRO0628Q9UI54 55 aa12.13□□□□□ -0.47
SFSWAP-203ENST00000535236 PKD1L2Q7Z442 2459 aa12.13□□□□□ -0.47
SFSWAP-203ENST00000535236 USP9YO00507 2555 aaPredicted RBP12.11□□□□□ -0.47
SFSWAP-203ENST00000535236 CEP295Q9C0D2 2601 aa12.11□□□□□ -0.47
SFSWAP-203ENST00000535236 K7EIL1 84 aa12.11□□□□□ -0.47
SFSWAP-203ENST00000535236 KLK9Q2XQG4 91 aa12.11□□□□□ -0.47
SFSWAP-203ENST00000535236 KRTAP10-11P60412 298 aa12.09□□□□□ -0.47
SFSWAP-203ENST00000535236 K7EQZ3 153 aa12.09□□□□□ -0.47
SFSWAP-203ENST00000535236 LINC00304Q8N9R0 145 aa12.08□□□□□ -0.48
SFSWAP-203ENST00000535236 KCNQ1DNQ9H478 68 aa12.08□□□□□ -0.48
SFSWAP-203ENST00000535236 LITAFQ99732 161 aa12.08□□□□□ -0.48
SFSWAP-203ENST00000535236 CSNK1G2-AS1Q8NCQ2 148 aa12.07□□□□□ -0.48
SFSWAP-203ENST00000535236 DSCR10P59022 87 aa12.06□□□□□ -0.48
SFSWAP-203ENST00000535236 WDR87Q6ZQQ6 2873 aa12.05□□□□□ -0.48
SFSWAP-203ENST00000535236 LINC01600Q96MT4 127 aa12.04□□□□□ -0.48
SFSWAP-203ENST00000535236 SPINT4Q6UDR6 99 aa12.04□□□□□ -0.48
SFSWAP-203ENST00000535236 C4orf26Q17RF5 130 aa12.03□□□□□ -0.48
SFSWAP-203ENST00000535236 ZNF861PO60384 105 aa12.02□□□□□ -0.49
SFSWAP-203ENST00000535236 IGFL1Q6UW32 110 aa12.02□□□□□ -0.49
SFSWAP-203ENST00000535236 C19orf73Q9NVV2 129 aa12.02□□□□□ -0.49
SFSWAP-203ENST00000535236 RPS28P62857 69 aaKnown RBP12.02□□□□□ -0.49
SFSWAP-203ENST00000535236 SSBP3-AS1Q7Z2R9 100 aa12.02□□□□□ -0.49
SFSWAP-203ENST00000535236 LINC00528Q8N1L1 170 aa12.01□□□□□ -0.49
SFSWAP-203ENST00000535236 C9orf92A6NGG3 77 aa12.01□□□□□ -0.49
SFSWAP-203ENST00000535236 COA5Q86WW8 74 aa12□□□□□ -0.49
SFSWAP-203ENST00000535236 C8orf17Q9NRJ1 99 aa12□□□□□ -0.49
SFSWAP-203ENST00000535236 OBSCN-AS1Q96MR7 158 aa11.99□□□□□ -0.49
SFSWAP-203ENST00000535236 MTORP42345 2549 aa11.99□□□□□ -0.49
SFSWAP-203ENST00000535236 A0A087WTM6 91 aa11.99□□□□□ -0.49
SFSWAP-203ENST00000535236 C15orf56Q8N910 161 aa11.99□□□□□ -0.49
SFSWAP-203ENST00000535236 SMR3BP02814 79 aaPredicted RBP11.98□□□□□ -0.49
SFSWAP-203ENST00000535236 PRR34Q9NV39 138 aa11.97□□□□□ -0.49
SFSWAP-203ENST00000535236 APLNQ9ULZ1 77 aa11.96□□□□□ -0.49
SFSWAP-203ENST00000535236 A0A1B0GVX0 72 aa11.95□□□□□ -0.5
SFSWAP-203ENST00000535236 PRR15Q8IV56 129 aa11.94□□□□□ -0.5
SFSWAP-203ENST00000535236 SPTBN4Q9H254 2564 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms