RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 IGKV2D-28P01615 120 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BJP06899 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 SMIM13P0DJ93 91 aa3□□□□□ -1.93
USH1C-210ENST00000534556 FABP4P15090 132 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BOP23527 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BBP33778 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BDP58876 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BCP62807 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST2H2BEQ16778 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 KRTAP13-2Q52LG2 175 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST2H2BFQ5QNW6 126 aaPredicted RBP3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BHQ93079 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 DIRC1Q969H9 104 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BNQ99877 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BMQ99879 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 IGLV1-50A0A075B6I6 118 aa2.99□□□□□ -1.93
USH1C-210ENST00000534556 M0R378 163 aa2.99□□□□□ -1.93
USH1C-210ENST00000534556 BCE1O60756 84 aa2.99□□□□□ -1.93
USH1C-210ENST00000534556 LEPROTL1O95214 131 aa2.99□□□□□ -1.93
USH1C-210ENST00000534556 FAT4Q6V0I7 4981 aa2.99□□□□□ -1.93
USH1C-210ENST00000534556 PRLHP81277 87 aa2.98□□□□□ -1.93
USH1C-210ENST00000534556 LBHQ53QV2 105 aaPredicted RBP2.98□□□□□ -1.93
USH1C-210ENST00000534556 SOSTDC1Q6X4U4 206 aa2.98□□□□□ -1.93
USH1C-210ENST00000534556 DAND5Q8N907 189 aa2.98□□□□□ -1.93
USH1C-210ENST00000534556 TMEM126AQ9H061 195 aa2.98□□□□□ -1.93
USH1C-210ENST00000534556 KRTAP4-16G5E9R7 235 aaPredicted RBP2.97□□□□□ -1.93
USH1C-210ENST00000534556 LEPROTO15243 131 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 LINC00158P58513 81 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 COX17Q14061 63 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 ADAMTSL4-AS1Q5T5F5 129 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 MIR7-3HGQ8N6C7 128 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 NKAPP1Q8N9T2 125 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 NDUFA12Q9UI09 145 aa2.97□□□□□ -1.93
USH1C-210ENST00000534556 IGKV2D-26A0A0A0MRZ7 120 aa2.96□□□□□ -1.94
USH1C-210ENST00000534556 J3QQQ9 107 aa2.96□□□□□ -1.94
USH1C-210ENST00000534556 NCR3O14931 201 aa2.96□□□□□ -1.94
USH1C-210ENST00000534556 DPM2O94777 84 aa2.96□□□□□ -1.94
USH1C-210ENST00000534556 IGKCP01834 107 aa2.96□□□□□ -1.94
USH1C-210ENST00000534556 COA6Q5JTJ3 125 aaKnown RBP2.96□□□□□ -1.94
USH1C-210ENST00000534556 TTTY13Q9BZ97 58 aa2.96□□□□□ -1.94
USH1C-210ENST00000534556 LOC107984156A0A0G2JMH3 177 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 SYS1-DBNDD2H3BUS1 97 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 ERC2-IT1O76042 136 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 C3orf79P0CE67 100 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 SPRR1AP35321 89 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 RPL28P46779 137 aaKnown RBP2.95□□□□□ -1.94
USH1C-210ENST00000534556 LINC01545Q5VT33 79 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 FAM19A1Q7Z5A9 133 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 ARL17AQ8IVW1 177 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 BOD1L2Q8IYS8 172 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 C3orf22Q8N5N4 141 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 PLEKHB2Q96CS7 222 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 LITAFQ99732 161 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 HSPB8Q9UJY1 196 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 MUC17Q685J3 4493 aa2.95□□□□□ -1.94
USH1C-210ENST00000534556 A0A0J9YXY3 114 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 TRBV10-3A0A0K0K1G6 114 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 MYMXA0A1B0GTQ4 84 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 E9PLD3 99 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 TSPAN13O95857 204 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 PLNP26678 52 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 UBE2AP49459 152 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 NPC2P61916 151 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 HERV-K104P63124 156 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 RPL24P83731 157 aaKnown RBP2.94□□□□□ -1.94
USH1C-210ENST00000534556 MEIG1Q5JSS6 88 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 SMCR5Q8TEV8 140 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 MAP1LC3CQ9BXW4 147 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 KCNQ1DNQ9H478 68 aa2.94□□□□□ -1.94
USH1C-210ENST00000534556 ANKRD39Q53RE8 183 aa2.93□□□□□ -1.94
USH1C-210ENST00000534556 SFTA2Q6UW10 78 aa2.93□□□□□ -1.94
USH1C-210ENST00000534556 SPRR4Q96PI1 79 aa2.93□□□□□ -1.94
USH1C-210ENST00000534556 Q9BRP9 147 aa2.93□□□□□ -1.94
USH1C-210ENST00000534556 KRTAP9-2Q9BYQ4 174 aa2.93□□□□□ -1.94
USH1C-210ENST00000534556 MUC2Q02817 5179 aa2.93□□□□□ -1.94
USH1C-210ENST00000534556 KRTAP9-6A0A140TA67 174 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 B5MCH6 92 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 PRYO14603 147 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 CRYGAP11844 174 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 FAM229BQ4G0N7 80 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 PET117Q6UWS5 81 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 ATOH7Q8N100 152 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 LINC00337Q8N6G1 96 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 TYMSOSQ8TAI1 123 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 RETNLBQ9BQ08 111 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 HIGD2AQ9BW72 106 aa2.92□□□□□ -1.94
USH1C-210ENST00000534556 ATP6V1G1O75348 118 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 IGLV6-57P01721 117 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 LGALS3P17931 250 aaKnown RBP2.91□□□□□ -1.94
USH1C-210ENST00000534556 RPL13AP40429 203 aaKnown RBP2.91□□□□□ -1.94
USH1C-210ENST00000534556 NMUP48645 174 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 KRTDAPP60985 99 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 HIST3H2BBQ8N257 126 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 LINC00308Q8TCZ7 52 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 PPDPFQ9H3Y8 114 aa2.91□□□□□ -1.94
USH1C-210ENST00000534556 TRBV10-2A0A0K0K1G8 114 aa2.9□□□□□ -1.95
USH1C-210ENST00000534556 NDUFC2O95298 119 aa2.9□□□□□ -1.95
USH1C-210ENST00000534556 DDTP30046 118 aa2.9□□□□□ -1.95
USH1C-210ENST00000534556 HERVK_113P61574 105 aa2.9□□□□□ -1.95
USH1C-210ENST00000534556 PRR4Q16378 134 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms