RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 IGKCP01834 107 aa7.9□□□□□ -1.14
VPS28-216ENST00000533806 UBE2BP63146 152 aa7.9□□□□□ -1.14
VPS28-216ENST00000533806 Q8NDZ9 215 aa7.9□□□□□ -1.14
VPS28-216ENST00000533806 LINC00167Q96N53 147 aa7.9□□□□□ -1.14
VPS28-216ENST00000533806 LEPROTO15243 131 aa7.89□□□□□ -1.15
VPS28-216ENST00000533806 VPREB1P12018 145 aa7.89□□□□□ -1.15
VPS28-216ENST00000533806 HERV-K104P63124 156 aa7.89□□□□□ -1.15
VPS28-216ENST00000533806 NDUFA12Q9UI09 145 aa7.88□□□□□ -1.15
VPS28-216ENST00000533806 LINC00158P58513 81 aa7.87□□□□□ -1.15
VPS28-216ENST00000533806 KRTAP10-8P60410 259 aa7.87□□□□□ -1.15
VPS28-216ENST00000533806 LINC01545Q5VT33 79 aa7.87□□□□□ -1.15
VPS28-216ENST00000533806 REG3GQ6UW15 175 aa7.87□□□□□ -1.15
VPS28-216ENST00000533806 PLEKHB2Q96CS7 222 aa7.87□□□□□ -1.15
VPS28-216ENST00000533806 MYMXA0A1B0GTQ4 84 aa7.86□□□□□ -1.15
VPS28-216ENST00000533806 J3QQQ9 107 aa7.86□□□□□ -1.15
VPS28-216ENST00000533806 C3orf79P0CE67 100 aa7.86□□□□□ -1.15
VPS28-216ENST00000533806 SMIM13P0DJ93 91 aa7.86□□□□□ -1.15
VPS28-216ENST00000533806 PET117Q6UWS5 81 aa7.86□□□□□ -1.15
VPS28-216ENST00000533806 GAGE10A6NGK3 116 aa7.85□□□□□ -1.15
VPS28-216ENST00000533806 RPL37AP8A6NKH3 93 aa7.85□□□□□ -1.15
VPS28-216ENST00000533806 H0Y9J4 135 aa7.85□□□□□ -1.15
VPS28-216ENST00000533806 DIRC1Q969H9 104 aa7.85□□□□□ -1.15
VPS28-216ENST00000533806 IGLV1-50A0A075B6I6 118 aa7.84□□□□□ -1.15
VPS28-216ENST00000533806 A0A0U1RRA0 63 aa7.84□□□□□ -1.15
VPS28-216ENST00000533806 LINC00587B1AMM8 73 aa7.84□□□□□ -1.15
VPS28-216ENST00000533806 E9PLD3 99 aa7.84□□□□□ -1.15
VPS28-216ENST00000533806 ZNF861PO60384 105 aa7.84□□□□□ -1.15
VPS28-216ENST00000533806 RPL24P83731 157 aaKnown RBP7.84□□□□□ -1.15
VPS28-216ENST00000533806 NKAPP1Q8N9T2 125 aa7.84□□□□□ -1.15
VPS28-216ENST00000533806 LOC107984156A0A0G2JMH3 177 aa7.83□□□□□ -1.16
VPS28-216ENST00000533806 BCE1O60756 84 aa7.83□□□□□ -1.16
VPS28-216ENST00000533806 NMUP48645 174 aa7.83□□□□□ -1.16
VPS28-216ENST00000533806 HERVK_113P61574 105 aa7.83□□□□□ -1.16
VPS28-216ENST00000533806 ARL17AQ8IVW1 177 aa7.83□□□□□ -1.16
VPS28-216ENST00000533806 MIR7-3HGQ8N6C7 128 aa7.83□□□□□ -1.16
VPS28-216ENST00000533806 KRTAP1-4P0C5Y4 121 aa7.82□□□□□ -1.16
VPS28-216ENST00000533806 MEIG1Q5JSS6 88 aa7.82□□□□□ -1.16
VPS28-216ENST00000533806 KRTAP13-1Q8IUC0 172 aa7.82□□□□□ -1.16
VPS28-216ENST00000533806 IGKV2-28A0A075B6P5 120 aa7.8□□□□□ -1.16
VPS28-216ENST00000533806 IGKV2D-28P01615 120 aa7.8□□□□□ -1.16
VPS28-216ENST00000533806 LGALS3P17931 250 aaKnown RBP7.8□□□□□ -1.16
VPS28-216ENST00000533806 M0R378 163 aa7.79□□□□□ -1.16
VPS28-216ENST00000533806 KRTDAPP60985 99 aa7.79□□□□□ -1.16
VPS28-216ENST00000533806 IGKV2D-26A0A0A0MRZ7 120 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 A0A0J9YXY3 114 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 RPL28P46779 137 aaKnown RBP7.78□□□□□ -1.16
VPS28-216ENST00000533806 ADAMTSL4-AS1Q5T5F5 129 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 BOD1L2Q8IYS8 172 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 HIST3H2BBQ8N257 126 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 DAND5Q8N907 189 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 TMEM126AQ9H061 195 aa7.78□□□□□ -1.16
VPS28-216ENST00000533806 TMEM238C9JI98 176 aa7.77□□□□□ -1.17
VPS28-216ENST00000533806 LITAFQ99732 161 aa7.77□□□□□ -1.17
VPS28-216ENST00000533806 HIST1H2BLQ99880 126 aa7.77□□□□□ -1.17
VPS28-216ENST00000533806 EIF4EBP3O60516 100 aaPredicted RBP7.76□□□□□ -1.17
VPS28-216ENST00000533806 PRR26Q8N8Z3 221 aa7.76□□□□□ -1.17
VPS28-216ENST00000533806 TTTY13Q9BZ97 58 aa7.75□□□□□ -1.17
VPS28-216ENST00000533806 SOSTDC1Q6X4U4 206 aa7.74□□□□□ -1.17
VPS28-216ENST00000533806 KCNQ1DNQ9H478 68 aa7.74□□□□□ -1.17
VPS28-216ENST00000533806 TRBV10-2A0A0K0K1G8 114 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 C20orf202A1L168 122 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 NCR3O14931 201 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 TIMM17BO60830 172 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 NDUFC2O95298 119 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 SPRR1AP35321 89 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 ANKRD39Q53RE8 183 aa7.73□□□□□ -1.17
VPS28-216ENST00000533806 KRTAP4-16G5E9R7 235 aaPredicted RBP7.72□□□□□ -1.17
VPS28-216ENST00000533806 UBE2AP49459 152 aa7.72□□□□□ -1.17
VPS28-216ENST00000533806 PRLHP81277 87 aa7.72□□□□□ -1.17
VPS28-216ENST00000533806 TRBV10-3A0A0K0K1G6 114 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 ZNF815PA8K554 130 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 PRYO14603 147 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 AKR1D1P51857 326 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 FAM19A1Q7Z5A9 133 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 ATOH7Q8N100 152 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 UBR4Q5T4S7 5183 aa7.71□□□□□ -1.18
VPS28-216ENST00000533806 C5orf52A6NGY3 159 aa7.7□□□□□ -1.18
VPS28-216ENST00000533806 S100A6P06703 90 aa7.7□□□□□ -1.18
VPS28-216ENST00000533806 S100A2P29034 98 aa7.7□□□□□ -1.18
VPS28-216ENST00000533806 SNRPEP62304 92 aaKnown RBP7.7□□□□□ -1.18
VPS28-216ENST00000533806 LINC00337Q8N6G1 96 aa7.7□□□□□ -1.18
VPS28-216ENST00000533806 LINC00308Q8TCZ7 52 aa7.7□□□□□ -1.18
VPS28-216ENST00000533806 SPANXB1Q9NS25 103 aaPredicted RBP7.7□□□□□ -1.18
VPS28-216ENST00000533806 A0A087X002 238 aa7.69□□□□□ -1.18
VPS28-216ENST00000533806 IGLV6-57P01721 117 aa7.69□□□□□ -1.18
VPS28-216ENST00000533806 MIEN1Q9BRT3 115 aa7.69□□□□□ -1.18
VPS28-216ENST00000533806 RPL13AP40429 203 aaKnown RBP7.68□□□□□ -1.18
VPS28-216ENST00000533806 DDTP30046 118 aa7.67□□□□□ -1.18
VPS28-216ENST00000533806 NPC2P61916 151 aa7.67□□□□□ -1.18
VPS28-216ENST00000533806 PCP2Q8IVA1 136 aa7.67□□□□□ -1.18
VPS28-216ENST00000533806 ANAPC11Q9NYG5 84 aa7.67□□□□□ -1.18
VPS28-216ENST00000533806 FAM229BQ4G0N7 80 aa7.66□□□□□ -1.18
VPS28-216ENST00000533806 SPANXDQ9BXN6 97 aa7.66□□□□□ -1.18
VPS28-216ENST00000533806 SPANXCQ9NY87 97 aa7.66□□□□□ -1.18
VPS28-216ENST00000533806 KRTAP13-2Q52LG2 175 aa7.65□□□□□ -1.18
VPS28-216ENST00000533806 PPDPFQ9H3Y8 114 aa7.65□□□□□ -1.18
VPS28-216ENST00000533806 B5MCH6 92 aa7.64□□□□□ -1.19
VPS28-216ENST00000533806 CRYGAP11844 174 aa7.64□□□□□ -1.19
VPS28-216ENST00000533806 LRP2P98164 4655 aa7.63□□□□□ -1.19
VPS28-216ENST00000533806 SMCR5Q8TEV8 140 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms