RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 A0A0U1RRA0 63 aa10.27□□□□□ -0.77
PHRF1-204ENST00000532550 COLCA2A8K830 154 aa10.27□□□□□ -0.77
PHRF1-204ENST00000532550 SERF1AO75920 110 aa10.27□□□□□ -0.77
PHRF1-204ENST00000532550 MEIG1Q5JSS6 88 aa10.25□□□□□ -0.77
PHRF1-204ENST00000532550 LINC00587B1AMM8 73 aa10.24□□□□□ -0.77
PHRF1-204ENST00000532550 SMIM13P0DJ93 91 aa10.24□□□□□ -0.77
PHRF1-204ENST00000532550 CRYGAP11844 174 aa10.24□□□□□ -0.77
PHRF1-204ENST00000532550 HERV-K104P63124 156 aa10.24□□□□□ -0.77
PHRF1-204ENST00000532550 HSPB8Q9UJY1 196 aa10.24□□□□□ -0.77
PHRF1-204ENST00000532550 FABP4P15090 132 aa10.23□□□□□ -0.77
PHRF1-204ENST00000532550 LINC00310P59036 64 aa10.23□□□□□ -0.77
PHRF1-204ENST00000532550 FAM19A1Q7Z5A9 133 aa10.23□□□□□ -0.77
PHRF1-204ENST00000532550 KRTAP13-1Q8IUC0 172 aa10.23□□□□□ -0.77
PHRF1-204ENST00000532550 TMEM126AQ9H061 195 aa10.23□□□□□ -0.77
PHRF1-204ENST00000532550 MYMXA0A1B0GTQ4 84 aa10.22□□□□□ -0.77
PHRF1-204ENST00000532550 TMEM238C9JI98 176 aa10.22□□□□□ -0.77
PHRF1-204ENST00000532550 Q8NDZ9 215 aa10.22□□□□□ -0.77
PHRF1-204ENST00000532550 NDUFA12Q9UI09 145 aa10.22□□□□□ -0.77
PHRF1-204ENST00000532550 PLNP26678 52 aa10.21□□□□□ -0.77
PHRF1-204ENST00000532550 PRLHP81277 87 aa10.21□□□□□ -0.77
PHRF1-204ENST00000532550 A0A087X002 238 aa10.2□□□□□ -0.78
PHRF1-204ENST00000532550 M0R378 163 aa10.2□□□□□ -0.78
PHRF1-204ENST00000532550 MIR7-3HGQ8N6C7 128 aa10.2□□□□□ -0.78
PHRF1-204ENST00000532550 TYMSOSQ8TAI1 123 aa10.2□□□□□ -0.78
PHRF1-204ENST00000532550 MAP1LC3CQ9BXW4 147 aa10.2□□□□□ -0.78
PHRF1-204ENST00000532550 ANAPC11Q9NYG5 84 aa10.2□□□□□ -0.78
PHRF1-204ENST00000532550 LEPROTO15243 131 aa10.19□□□□□ -0.78
PHRF1-204ENST00000532550 DPM2O94777 84 aa10.19□□□□□ -0.78
PHRF1-204ENST00000532550 BOD1L2Q8IYS8 172 aa10.19□□□□□ -0.78
PHRF1-204ENST00000532550 PLEKHB2Q96CS7 222 aa10.19□□□□□ -0.78
PHRF1-204ENST00000532550 HERVK_113P61574 105 aa10.17□□□□□ -0.78
PHRF1-204ENST00000532550 TSPAN13O95857 204 aa10.16□□□□□ -0.78
PHRF1-204ENST00000532550 IGKCP01834 107 aa10.16□□□□□ -0.78
PHRF1-204ENST00000532550 FAM229BQ4G0N7 80 aa10.16□□□□□ -0.78
PHRF1-204ENST00000532550 PMCHL2Q9BQD1 86 aa10.16□□□□□ -0.78
PHRF1-204ENST00000532550 J3QQQ9 107 aa10.15□□□□□ -0.78
PHRF1-204ENST00000532550 PRR4Q16378 134 aa10.15□□□□□ -0.78
PHRF1-204ENST00000532550 IGKV2D-26A0A0A0MRZ7 120 aa10.14□□□□□ -0.79
PHRF1-204ENST00000532550 TSPEAR-AS2P59090 65 aa10.14□□□□□ -0.79
PHRF1-204ENST00000532550 HIGD2AQ9BW72 106 aa10.14□□□□□ -0.79
PHRF1-204ENST00000532550 NCR3O14931 201 aa10.13□□□□□ -0.79
PHRF1-204ENST00000532550 LGALS3P17931 250 aaKnown RBP10.13□□□□□ -0.79
PHRF1-204ENST00000532550 NMUP48645 174 aa10.13□□□□□ -0.79
PHRF1-204ENST00000532550 LPAP08519 4548 aa10.13□□□□□ -0.79
PHRF1-204ENST00000532550 KRTAP13-2Q52LG2 175 aa10.12□□□□□ -0.79
PHRF1-204ENST00000532550 PRYO14603 147 aa10.11□□□□□ -0.79
PHRF1-204ENST00000532550 S100A12P80511 92 aa10.11□□□□□ -0.79
PHRF1-204ENST00000532550 DAND5Q8N907 189 aa10.11□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BKO60814 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BJP06899 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BOP23527 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BBP33778 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BDP58876 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BCP62807 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST2H2BEQ16778 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BHQ93079 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BNQ99877 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 HIST1H2BMQ99879 126 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 KCNQ1DNQ9H478 68 aa10.1□□□□□ -0.79
PHRF1-204ENST00000532550 LOC107984156A0A0G2JMH3 177 aa10.09□□□□□ -0.79
PHRF1-204ENST00000532550 ARL17AQ8IVW1 177 aa10.09□□□□□ -0.79
PHRF1-204ENST00000532550 TRBV10-3A0A0K0K1G6 114 aa10.08□□□□□ -0.8
PHRF1-204ENST00000532550 LINC00337Q8N6G1 96 aa10.08□□□□□ -0.8
PHRF1-204ENST00000532550 MIEN1Q9BRT3 115 aa10.08□□□□□ -0.8
PHRF1-204ENST00000532550 ETDCA0A1B0GVM5 59 aa10.07□□□□□ -0.8
PHRF1-204ENST00000532550 SYS1-DBNDD2H3BUS1 97 aa10.07□□□□□ -0.8
PHRF1-204ENST00000532550 LINC00304Q8N9R0 145 aa10.07□□□□□ -0.8
PHRF1-204ENST00000532550 SPRR1AP35321 89 aa10.06□□□□□ -0.8
PHRF1-204ENST00000532550 ZNF706Q9Y5V0 76 aaPredicted RBP10.06□□□□□ -0.8
PHRF1-204ENST00000532550 TRBV10-2A0A0K0K1G8 114 aa10.05□□□□□ -0.8
PHRF1-204ENST00000532550 E9PLD3 99 aa10.05□□□□□ -0.8
PHRF1-204ENST00000532550 SPRR4Q96PI1 79 aa10.05□□□□□ -0.8
PHRF1-204ENST00000532550 RNF213Q63HN8 5207 aa10.04□□□□□ -0.8
PHRF1-204ENST00000532550 DDTP30046 118 aa10.04□□□□□ -0.8
PHRF1-204ENST00000532550 SMCR5Q8TEV8 140 aa10.04□□□□□ -0.8
PHRF1-204ENST00000532550 A0A0J9YXY3 114 aa10.03□□□□□ -0.8
PHRF1-204ENST00000532550 KRTAP4-16G5E9R7 235 aaPredicted RBP10.03□□□□□ -0.8
PHRF1-204ENST00000532550 SPANXB1Q9NS25 103 aaPredicted RBP10.03□□□□□ -0.8
PHRF1-204ENST00000532550 NDUFC2O95298 119 aa10.02□□□□□ -0.81
PHRF1-204ENST00000532550 S100A7L2Q5SY68 101 aa10.02□□□□□ -0.81
PHRF1-204ENST00000532550 PET117Q6UWS5 81 aa10.02□□□□□ -0.81
PHRF1-204ENST00000532550 NPC2P61916 151 aa10.01□□□□□ -0.81
PHRF1-204ENST00000532550 LINC01545Q5VT33 79 aa10.01□□□□□ -0.81
PHRF1-204ENST00000532550 C3orf22Q8N5N4 141 aa10.01□□□□□ -0.81
PHRF1-204ENST00000532550 CTAG1AP78358 180 aa10□□□□□ -0.81
PHRF1-204ENST00000532550 ADAMTSL4-AS1Q5T5F5 129 aa10□□□□□ -0.81
PHRF1-204ENST00000532550 B5MCH6 92 aa9.99□□□□□ -0.81
PHRF1-204ENST00000532550 PPDPFQ9H3Y8 114 aa9.98□□□□□ -0.81
PHRF1-204ENST00000532550 IGLV6-57P01721 117 aa9.97□□□□□ -0.81
PHRF1-204ENST00000532550 C4orf48Q5BLP8 95 aa9.97□□□□□ -0.81
PHRF1-204ENST00000532550 SPAG11AQ6PDA7 123 aa9.97□□□□□ -0.81
PHRF1-204ENST00000532550 SOSTDC1Q6X4U4 206 aa9.97□□□□□ -0.81
PHRF1-204ENST00000532550 RETNLBQ9BQ08 111 aa9.97□□□□□ -0.81
PHRF1-204ENST00000532550 C3orf79P0CE67 100 aa9.96□□□□□ -0.82
PHRF1-204ENST00000532550 S100A1P23297 94 aa9.96□□□□□ -0.82
PHRF1-204ENST00000532550 COA6Q5JTJ3 125 aaKnown RBP9.96□□□□□ -0.82
PHRF1-204ENST00000532550 EIF4EBP3O60516 100 aaPredicted RBP9.95□□□□□ -0.82
PHRF1-204ENST00000532550 KRTDAPP60985 99 aa9.95□□□□□ -0.82
PHRF1-204ENST00000532550 GAGE2AQ6NT46 116 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms