RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 KRTAP13-1Q8IUC0 172 aa7.92□□□□□ -1.14
VPS28-211ENST00000530790 A0A0U1RRA0 63 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 SERF1AO75920 110 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 LEPROTL1O95214 131 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 CRYGAP11844 174 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 MEIG1Q5JSS6 88 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 Q8NDZ9 215 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 TMEM126AQ9H061 195 aa7.9□□□□□ -1.14
VPS28-211ENST00000530790 A0A087X002 238 aa7.89□□□□□ -1.15
VPS28-211ENST00000530790 TMEM238C9JI98 176 aa7.89□□□□□ -1.15
VPS28-211ENST00000530790 HERV-K104P63124 156 aa7.89□□□□□ -1.15
VPS28-211ENST00000530790 PRLHP81277 87 aa7.89□□□□□ -1.15
VPS28-211ENST00000530790 FAM19A1Q7Z5A9 133 aa7.89□□□□□ -1.15
VPS28-211ENST00000530790 LINC00310P59036 64 aa7.88□□□□□ -1.15
VPS28-211ENST00000530790 TYMSOSQ8TAI1 123 aa7.88□□□□□ -1.15
VPS28-211ENST00000530790 COLCA2A8K830 154 aa7.87□□□□□ -1.15
VPS28-211ENST00000530790 M0R378 163 aa7.87□□□□□ -1.15
VPS28-211ENST00000530790 SMIM13P0DJ93 91 aa7.87□□□□□ -1.15
VPS28-211ENST00000530790 PLNP26678 52 aa7.87□□□□□ -1.15
VPS28-211ENST00000530790 NDUFA12Q9UI09 145 aa7.87□□□□□ -1.15
VPS28-211ENST00000530790 HSPB8Q9UJY1 196 aa7.87□□□□□ -1.15
VPS28-211ENST00000530790 MYMXA0A1B0GTQ4 84 aa7.86□□□□□ -1.15
VPS28-211ENST00000530790 LINC00587B1AMM8 73 aa7.86□□□□□ -1.15
VPS28-211ENST00000530790 ANAPC11Q9NYG5 84 aa7.86□□□□□ -1.15
VPS28-211ENST00000530790 PRR4Q16378 134 aa7.85□□□□□ -1.15
VPS28-211ENST00000530790 FAM229BQ4G0N7 80 aa7.85□□□□□ -1.15
VPS28-211ENST00000530790 BOD1L2Q8IYS8 172 aa7.85□□□□□ -1.15
VPS28-211ENST00000530790 MIR7-3HGQ8N6C7 128 aa7.85□□□□□ -1.15
VPS28-211ENST00000530790 MAP1LC3CQ9BXW4 147 aa7.85□□□□□ -1.15
VPS28-211ENST00000530790 FABP4P15090 132 aa7.84□□□□□ -1.15
VPS28-211ENST00000530790 HERVK_113P61574 105 aa7.84□□□□□ -1.15
VPS28-211ENST00000530790 PLEKHB2Q96CS7 222 aa7.84□□□□□ -1.15
VPS28-211ENST00000530790 NCR3O14931 201 aa7.83□□□□□ -1.16
VPS28-211ENST00000530790 LEPROTO15243 131 aa7.83□□□□□ -1.16
VPS28-211ENST00000530790 DPM2O94777 84 aa7.83□□□□□ -1.16
VPS28-211ENST00000530790 TSPAN13O95857 204 aa7.83□□□□□ -1.16
VPS28-211ENST00000530790 TSPEAR-AS2P59090 65 aa7.83□□□□□ -1.16
VPS28-211ENST00000530790 RNF213Q63HN8 5207 aa7.83□□□□□ -1.16
VPS28-211ENST00000530790 IGKV2D-26A0A0A0MRZ7 120 aa7.82□□□□□ -1.16
VPS28-211ENST00000530790 PRYO14603 147 aa7.82□□□□□ -1.16
VPS28-211ENST00000530790 KRTAP13-2Q52LG2 175 aa7.82□□□□□ -1.16
VPS28-211ENST00000530790 HIGD2AQ9BW72 106 aa7.82□□□□□ -1.16
VPS28-211ENST00000530790 J3QQQ9 107 aa7.81□□□□□ -1.16
VPS28-211ENST00000530790 IGKCP01834 107 aa7.81□□□□□ -1.16
VPS28-211ENST00000530790 PMCHL2Q9BQD1 86 aa7.81□□□□□ -1.16
VPS28-211ENST00000530790 LGALS3P17931 250 aaKnown RBP7.8□□□□□ -1.16
VPS28-211ENST00000530790 NMUP48645 174 aa7.8□□□□□ -1.16
VPS28-211ENST00000530790 S100A12P80511 92 aa7.79□□□□□ -1.16
VPS28-211ENST00000530790 LINC00304Q8N9R0 145 aa7.79□□□□□ -1.16
VPS28-211ENST00000530790 LPAP08519 4548 aa7.79□□□□□ -1.16
VPS28-211ENST00000530790 DAND5Q8N907 189 aa7.78□□□□□ -1.16
VPS28-211ENST00000530790 MIEN1Q9BRT3 115 aa7.78□□□□□ -1.16
VPS28-211ENST00000530790 KCNQ1DNQ9H478 68 aa7.78□□□□□ -1.16
VPS28-211ENST00000530790 ZNF706Q9Y5V0 76 aaPredicted RBP7.78□□□□□ -1.16
VPS28-211ENST00000530790 TRBV10-3A0A0K0K1G6 114 aa7.77□□□□□ -1.17
VPS28-211ENST00000530790 ETDCA0A1B0GVM5 59 aa7.77□□□□□ -1.17
VPS28-211ENST00000530790 LINC00337Q8N6G1 96 aa7.77□□□□□ -1.17
VPS28-211ENST00000530790 SPRR1AP35321 89 aa7.76□□□□□ -1.17
VPS28-211ENST00000530790 SPRR4Q96PI1 79 aa7.76□□□□□ -1.17
VPS28-211ENST00000530790 LOC107984156A0A0G2JMH3 177 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BKO60814 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BJP06899 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BOP23527 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BBP33778 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BDP58876 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BCP62807 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST2H2BEQ16778 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.75□□□□□ -1.17
VPS28-211ENST00000530790 ARL17AQ8IVW1 177 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BHQ93079 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BNQ99877 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 HIST1H2BMQ99879 126 aa7.75□□□□□ -1.17
VPS28-211ENST00000530790 SPANXB1Q9NS25 103 aaPredicted RBP7.75□□□□□ -1.17
VPS28-211ENST00000530790 TRBV10-2A0A0K0K1G8 114 aa7.74□□□□□ -1.17
VPS28-211ENST00000530790 E9PLD3 99 aa7.74□□□□□ -1.17
VPS28-211ENST00000530790 SYS1-DBNDD2H3BUS1 97 aa7.74□□□□□ -1.17
VPS28-211ENST00000530790 DDTP30046 118 aa7.74□□□□□ -1.17
VPS28-211ENST00000530790 C3orf22Q8N5N4 141 aa7.74□□□□□ -1.17
VPS28-211ENST00000530790 KRTAP4-16G5E9R7 235 aaPredicted RBP7.73□□□□□ -1.17
VPS28-211ENST00000530790 RETNLBQ9BQ08 111 aa7.72□□□□□ -1.17
VPS28-211ENST00000530790 A0A0J9YXY3 114 aa7.71□□□□□ -1.18
VPS28-211ENST00000530790 NDUFC2O95298 119 aa7.71□□□□□ -1.18
VPS28-211ENST00000530790 CTAG1AP78358 180 aa7.71□□□□□ -1.18
VPS28-211ENST00000530790 S100A7L2Q5SY68 101 aa7.71□□□□□ -1.18
VPS28-211ENST00000530790 SMCR5Q8TEV8 140 aa7.71□□□□□ -1.18
VPS28-211ENST00000530790 B5MCH6 92 aa7.7□□□□□ -1.18
VPS28-211ENST00000530790 NPC2P61916 151 aa7.7□□□□□ -1.18
VPS28-211ENST00000530790 LINC01545Q5VT33 79 aa7.69□□□□□ -1.18
VPS28-211ENST00000530790 PET117Q6UWS5 81 aa7.69□□□□□ -1.18
VPS28-211ENST00000530790 PPDPFQ9H3Y8 114 aa7.69□□□□□ -1.18
VPS28-211ENST00000530790 TRAV23DV6A0A075B6W5 121 aa7.68□□□□□ -1.18
VPS28-211ENST00000530790 IGLV6-57P01721 117 aa7.68□□□□□ -1.18
VPS28-211ENST00000530790 ADAMTSL4-AS1Q5T5F5 129 aa7.68□□□□□ -1.18
VPS28-211ENST00000530790 SPAG11AQ6PDA7 123 aa7.68□□□□□ -1.18
VPS28-211ENST00000530790 SOSTDC1Q6X4U4 206 aa7.68□□□□□ -1.18
VPS28-211ENST00000530790 Q6ZRX8 168 aa7.68□□□□□ -1.18
VPS28-211ENST00000530790 LINC00483Q53H64 154 aa7.67□□□□□ -1.18
VPS28-211ENST00000530790 C4orf48Q5BLP8 95 aa7.67□□□□□ -1.18
VPS28-211ENST00000530790 GAGE2AQ6NT46 116 aa7.66□□□□□ -1.18
VPS28-211ENST00000530790 Q8NBF4 154 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms