RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 TMEM256-PLSCR3K7ERE1 68 aa9.75□□□□□ -0.85
USP48-213ENST00000529637 TRAV10A0A0B4J240 114 aa9.74□□□□□ -0.85
USP48-213ENST00000529637 UBL5Q9BZL1 73 aa9.74□□□□□ -0.85
USP48-213ENST00000529637 PRO0255Q9UI72 69 aa9.74□□□□□ -0.85
USP48-213ENST00000529637 C9orf116Q5BN46 136 aaPredicted RBP9.73□□□□□ -0.85
USP48-213ENST00000529637 ATP5EP2Q5VTU8 51 aa9.73□□□□□ -0.85
USP48-213ENST00000529637 LINC00336Q6ZUF6 198 aa9.73□□□□□ -0.85
USP48-213ENST00000529637 TENM1Q9UKZ4 2725 aa9.73□□□□□ -0.85
USP48-213ENST00000529637 C6orf99Q4VX62 202 aa9.73□□□□□ -0.85
USP48-213ENST00000529637 NDUFC2-KCTD14E9PQ53 114 aa9.72□□□□□ -0.85
USP48-213ENST00000529637 LINC00269Q8N2A0 174 aa9.72□□□□□ -0.85
USP48-213ENST00000529637 RMI2Q96E14 147 aa9.72□□□□□ -0.85
USP48-213ENST00000529637 ANGP03950 147 aaKnown RBP9.71□□□□□ -0.85
USP48-213ENST00000529637 X6R8D5 127 aa9.71□□□□□ -0.85
USP48-213ENST00000529637 HAMPP81172 84 aa9.71□□□□□ -0.86
USP48-213ENST00000529637 Q8N3U1 123 aa9.71□□□□□ -0.86
USP48-213ENST00000529637 ANK3Q12955 4377 aaKnown RBP9.7□□□□□ -0.86
USP48-213ENST00000529637 DAD1P61803 113 aa9.7□□□□□ -0.86
USP48-213ENST00000529637 Q6ZQT0 140 aa9.7□□□□□ -0.86
USP48-213ENST00000529637 LINC01547P58512 204 aaPredicted RBP9.69□□□□□ -0.86
USP48-213ENST00000529637 EPM2AB3EWF7 344 aa9.69□□□□□ -0.86
USP48-213ENST00000529637 INAFM1C9JVW0 142 aa9.69□□□□□ -0.86
USP48-213ENST00000529637 NSD1Q96L73 2696 aaPredicted RBP9.69□□□□□ -0.86
USP48-213ENST00000529637 OTOGQ6ZRI0 2925 aa9.69□□□□□ -0.86
USP48-213ENST00000529637 TRBV10-3A0A0K0K1G6 114 aa9.68□□□□□ -0.86
USP48-213ENST00000529637 RBM3P98179 157 aaKnown RBP9.67□□□□□ -0.86
USP48-213ENST00000529637 TRAV7A0A075B6U4 112 aa9.67□□□□□ -0.86
USP48-213ENST00000529637 FP248Q71RG6 208 aaPredicted RBP9.67□□□□□ -0.86
USP48-213ENST00000529637 TEP1Q99973 2627 aaKnown RBP9.67□□□□□ -0.86
USP48-213ENST00000529637 C9orf66Q5T8R8 295 aa9.67□□□□□ -0.86
USP48-213ENST00000529637 LAMTOR3Q9UHA4 124 aa9.67□□□□□ -0.86
USP48-213ENST00000529637 SERP1Q9Y6X1 66 aa9.67□□□□□ -0.86
USP48-213ENST00000529637 IGHV4-28A0A0C4DH34 117 aa9.66□□□□□ -0.86
USP48-213ENST00000529637 Q6ZVQ6 151 aa9.66□□□□□ -0.86
USP48-213ENST00000529637 SCXQ7RTU7 201 aa9.66□□□□□ -0.86
USP48-213ENST00000529637 Q8IZM0 81 aa9.66□□□□□ -0.86
USP48-213ENST00000529637 F8WEM9 126 aa9.66□□□□□ -0.86
USP48-213ENST00000529637 LINC00575Q6W349 94 aa9.65□□□□□ -0.86
USP48-213ENST00000529637 CHCHD10Q8WYQ3 142 aaPredicted RBP9.65□□□□□ -0.86
USP48-213ENST00000529637 LINC00474Q9P2X8 69 aa9.65□□□□□ -0.86
USP48-213ENST00000529637 A0A1B0GUV1 79 aa9.65□□□□□ -0.87
USP48-213ENST00000529637 LYRM9A8MSI8 78 aa9.64□□□□□ -0.87
USP48-213ENST00000529637 REG3AQ06141 175 aa9.64□□□□□ -0.87
USP48-213ENST00000529637 KIAA0087Q14695 138 aa9.64□□□□□ -0.87
USP48-213ENST00000529637 LINC00612Q8N6U2 182 aa9.64□□□□□ -0.87
USP48-213ENST00000529637 KLKP1Q107X0 134 aa9.64□□□□□ -0.87
USP48-213ENST00000529637 TM2D3Q9BRN9 247 aa9.64□□□□□ -0.87
USP48-213ENST00000529637 APOC4P55056 127 aa9.63□□□□□ -0.87
USP48-213ENST00000529637 CELA1Q9UNI1 258 aa9.63□□□□□ -0.87
USP48-213ENST00000529637 MRAPQ8TCY5 172 aa9.62□□□□□ -0.87
USP48-213ENST00000529637 CD164L2Q6UWJ8 174 aa9.61□□□□□ -0.87
USP48-213ENST00000529637 HIVEP1P15822 2718 aa9.61□□□□□ -0.87
USP48-213ENST00000529637 ZNF561-AS1K7EIQ3 104 aa9.61□□□□□ -0.87
USP48-213ENST00000529637 Q6ZQY7 126 aa9.61□□□□□ -0.87
USP48-213ENST00000529637 PRO0628Q9UI54 55 aa9.61□□□□□ -0.87
USP48-213ENST00000529637 LOC110117498A0A087WWA1 95 aa9.6□□□□□ -0.87
USP48-213ENST00000529637 C10orf25Q5T742 122 aa9.6□□□□□ -0.87
USP48-213ENST00000529637 C6orf223Q8N319 242 aa9.6□□□□□ -0.87
USP48-213ENST00000529637 KLK12Q9UKR0 248 aa9.6□□□□□ -0.87
USP48-213ENST00000529637 C1orf43Q9BWL3 253 aa9.59□□□□□ -0.87
USP48-213ENST00000529637 PKIGQ9Y2B9 76 aa9.58□□□□□ -0.88
USP48-213ENST00000529637 SPART-AS1P0CW21 52 aa9.58□□□□□ -0.88
USP48-213ENST00000529637 FLNBO75369 2602 aaKnown RBP9.58□□□□□ -0.88
USP48-213ENST00000529637 SPAG11BQ08648 103 aa9.57□□□□□ -0.88
USP48-213ENST00000529637 TRBV7-6A0A0J9YX20 115 aa9.57□□□□□ -0.88
USP48-213ENST00000529637 UNQ6190/PRO20217Q6UXQ8 127 aa9.56□□□□□ -0.88
USP48-213ENST00000529637 SMIM26A0A096LP01 95 aa9.56□□□□□ -0.88
USP48-213ENST00000529637 COX17Q14061 63 aa9.56□□□□□ -0.88
USP48-213ENST00000529637 Q8N9L7 120 aa9.56□□□□□ -0.88
USP48-213ENST00000529637 MUC7Q8TAX7 377 aa9.55□□□□□ -0.88
USP48-213ENST00000529637 TRRAPQ9Y4A5 3859 aa9.55□□□□□ -0.88
USP48-213ENST00000529637 TRBV7-4A0A0J9YYF1 115 aa9.55□□□□□ -0.88
USP48-213ENST00000529637 BCE1O60756 84 aa9.55□□□□□ -0.88
USP48-213ENST00000529637 FAM229BQ4G0N7 80 aa9.54□□□□□ -0.88
USP48-213ENST00000529637 F8P00451 2351 aa9.54□□□□□ -0.88
USP48-213ENST00000529637 IGHV4-30-4P0DP06 118 aa9.54□□□□□ -0.88
USP48-213ENST00000529637 MIFP14174 115 aa9.54□□□□□ -0.88
USP48-213ENST00000529637 Q8NAQ8 132 aa9.54□□□□□ -0.88
USP48-213ENST00000529637 KMT2BQ9UMN6 2715 aaPredicted RBP9.53□□□□□ -0.88
USP48-213ENST00000529637 CXCL6P80162 114 aa9.53□□□□□ -0.88
USP48-213ENST00000529637 CYSRT1A8MQ03 144 aa9.52□□□□□ -0.89
USP48-213ENST00000529637 LELP1Q5T871 98 aa9.52□□□□□ -0.89
USP48-213ENST00000529637 IGLV6-57P01721 117 aa9.51□□□□□ -0.89
USP48-213ENST00000529637 NREPQ16612 68 aa9.51□□□□□ -0.89
USP48-213ENST00000529637 XAGE1AQ9HD64 81 aa9.5□□□□□ -0.89
USP48-213ENST00000529637 MPLKIPQ8TAP9 179 aa9.5□□□□□ -0.89
USP48-213ENST00000529637 STAB1Q9NY15 2570 aa9.5□□□□□ -0.89
USP48-213ENST00000529637 A0A0U1RQV1 116 aa9.5□□□□□ -0.89
USP48-213ENST00000529637 BRK1Q8WUW1 75 aa9.5□□□□□ -0.89
USP48-213ENST00000529637 RETNQ9HD89 108 aa9.5□□□□□ -0.89
USP48-213ENST00000529637 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.49□□□□□ -0.89
USP48-213ENST00000529637 TMEM254Q8TBM7 123 aa9.49□□□□□ -0.89
USP48-213ENST00000529637 BPY2O14599 106 aa9.48□□□□□ -0.89
USP48-213ENST00000529637 HIGD2BQ4VC39 106 aa9.48□□□□□ -0.89
USP48-213ENST00000529637 OXLD1Q5BKU9 147 aa9.48□□□□□ -0.89
USP48-213ENST00000529637 MAST4O15021 2626 aa9.48□□□□□ -0.89
USP48-213ENST00000529637 NOTCH1P46531 2555 aa9.48□□□□□ -0.89
USP48-213ENST00000529637 PKD1L1Q8TDX9 2849 aa9.48□□□□□ -0.89
USP48-213ENST00000529637 PDE6GP18545 87 aa9.45□□□□□ -0.9
USP48-213ENST00000529637 WFDC10BQ8IUB3 73 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms