RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 LEPROTO15243 131 aa7.47□□□□□ -1.21
USH1C-208ENST00000529563 PHF5AQ7RTV0 110 aaKnown RBP7.47□□□□□ -1.21
USH1C-208ENST00000529563 RNF213Q63HN8 5207 aa7.46□□□□□ -1.21
USH1C-208ENST00000529563 LINC00158P58513 81 aa7.46□□□□□ -1.22
USH1C-208ENST00000529563 SNRPEP62304 92 aaKnown RBP7.46□□□□□ -1.22
USH1C-208ENST00000529563 HERV-K104P63124 156 aa7.46□□□□□ -1.22
USH1C-208ENST00000529563 HIST3H2BBQ8N257 126 aa7.46□□□□□ -1.22
USH1C-208ENST00000529563 DIRC1Q969H9 104 aa7.46□□□□□ -1.22
USH1C-208ENST00000529563 NDUFA12Q9UI09 145 aa7.46□□□□□ -1.22
USH1C-208ENST00000529563 ERG28Q9UKR5 140 aa7.46□□□□□ -1.22
USH1C-208ENST00000529563 COX17Q14061 63 aa7.45□□□□□ -1.22
USH1C-208ENST00000529563 LINC01545Q5VT33 79 aa7.45□□□□□ -1.22
USH1C-208ENST00000529563 FAM19A5Q7Z5A7 132 aaPredicted RBP7.45□□□□□ -1.22
USH1C-208ENST00000529563 HSBP1L1C9JCN9 74 aa7.44□□□□□ -1.22
USH1C-208ENST00000529563 J3QQQ9 107 aa7.44□□□□□ -1.22
USH1C-208ENST00000529563 XAGE1AQ9HD64 81 aa7.44□□□□□ -1.22
USH1C-208ENST00000529563 A0A0U1RRA0 63 aa7.43□□□□□ -1.22
USH1C-208ENST00000529563 NMUP48645 174 aa7.43□□□□□ -1.22
USH1C-208ENST00000529563 UBE2BP63146 152 aa7.43□□□□□ -1.22
USH1C-208ENST00000529563 HIST1H2BLQ99880 126 aa7.43□□□□□ -1.22
USH1C-208ENST00000529563 IGLV7-43P04211 117 aa7.42□□□□□ -1.22
USH1C-208ENST00000529563 PRR26Q8N8Z3 221 aa7.42□□□□□ -1.22
USH1C-208ENST00000529563 NKAPP1Q8N9T2 125 aa7.42□□□□□ -1.22
USH1C-208ENST00000529563 E9PLD3 99 aa7.41□□□□□ -1.22
USH1C-208ENST00000529563 M0QXV9 152 aa7.41□□□□□ -1.22
USH1C-208ENST00000529563 SCGB1D1O95968 90 aa7.41□□□□□ -1.22
USH1C-208ENST00000529563 LBHQ53QV2 105 aaPredicted RBP7.41□□□□□ -1.22
USH1C-208ENST00000529563 TMA7Q9Y2S6 64 aaKnown RBP7.41□□□□□ -1.22
USH1C-208ENST00000529563 FAM168BA1KXE4 195 aa7.4□□□□□ -1.22
USH1C-208ENST00000529563 RPL24P83731 157 aaKnown RBP7.4□□□□□ -1.22
USH1C-208ENST00000529563 ATOH7Q8N100 152 aa7.4□□□□□ -1.22
USH1C-208ENST00000529563 MIEN1Q9BRT3 115 aa7.4□□□□□ -1.22
USH1C-208ENST00000529563 C5orf52A6NGY3 159 aa7.39□□□□□ -1.23
USH1C-208ENST00000529563 H0Y9J4 135 aa7.39□□□□□ -1.23
USH1C-208ENST00000529563 SMIM13P0DJ93 91 aa7.39□□□□□ -1.23
USH1C-208ENST00000529563 C9orf129Q5T035 196 aaKnown RBP7.39□□□□□ -1.23
USH1C-208ENST00000529563 SCGB1D4Q6XE38 83 aa7.38□□□□□ -1.23
USH1C-208ENST00000529563 SND1-IT1Q9HBX3 110 aa7.38□□□□□ -1.23
USH1C-208ENST00000529563 IGLV1-50A0A075B6I6 118 aa7.37□□□□□ -1.23
USH1C-208ENST00000529563 ZNF815PA8K554 130 aa7.37□□□□□ -1.23
USH1C-208ENST00000529563 TSPEAR-AS2P59090 65 aa7.36□□□□□ -1.23
USH1C-208ENST00000529563 PRR4Q16378 134 aa7.36□□□□□ -1.23
USH1C-208ENST00000529563 MIR7-3HGQ8N6C7 128 aa7.36□□□□□ -1.23
USH1C-208ENST00000529563 C22orf24Q9Y442 160 aa7.36□□□□□ -1.23
USH1C-208ENST00000529563 RPL13AP40429 203 aaKnown RBP7.35□□□□□ -1.23
USH1C-208ENST00000529563 S100A12P80511 92 aa7.35□□□□□ -1.23
USH1C-208ENST00000529563 MRPL55Q7Z7F7 128 aaKnown RBP7.35□□□□□ -1.23
USH1C-208ENST00000529563 GAGE10A6NGK3 116 aa7.34□□□□□ -1.23
USH1C-208ENST00000529563 BOD1L2Q8IYS8 172 aa7.34□□□□□ -1.23
USH1C-208ENST00000529563 A0A0J9YXY3 114 aa7.33□□□□□ -1.24
USH1C-208ENST00000529563 KRTAP11-1Q8IUC1 163 aa7.33□□□□□ -1.24
USH1C-208ENST00000529563 TP73-AS1Q9UF72 201 aa7.33□□□□□ -1.24
USH1C-208ENST00000529563 DAND5Q8N907 189 aa7.32□□□□□ -1.24
USH1C-208ENST00000529563 COPS9Q8WXC6 57 aa7.32□□□□□ -1.24
USH1C-208ENST00000529563 IGKV2D-26A0A0A0MRZ7 120 aa7.31□□□□□ -1.24
USH1C-208ENST00000529563 RPL37AP8A6NKH3 93 aa7.31□□□□□ -1.24
USH1C-208ENST00000529563 TMEM238C9JI98 176 aa7.31□□□□□ -1.24
USH1C-208ENST00000529563 NPC2P61916 151 aa7.31□□□□□ -1.24
USH1C-208ENST00000529563 ANKRD39Q53RE8 183 aa7.31□□□□□ -1.24
USH1C-208ENST00000529563 LINC00167Q96N53 147 aa7.3□□□□□ -1.24
USH1C-208ENST00000529563 IGLV5-37A0A075B6J1 123 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 IGKV2-28A0A075B6P5 120 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 M0R378 163 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 TIMM17BO60830 172 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 IGKV2D-28P01615 120 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 VAMP8Q9BV40 100 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 TTTY13Q9BZ97 58 aa7.29□□□□□ -1.24
USH1C-208ENST00000529563 NCR3O14931 201 aa7.28□□□□□ -1.24
USH1C-208ENST00000529563 ZNF861PO60384 105 aa7.28□□□□□ -1.24
USH1C-208ENST00000529563 KRTAP1-4P0C5Y4 121 aa7.28□□□□□ -1.24
USH1C-208ENST00000529563 VPREB1P12018 145 aa7.28□□□□□ -1.24
USH1C-208ENST00000529563 S100A7L2Q5SY68 101 aa7.28□□□□□ -1.24
USH1C-208ENST00000529563 LPAP08519 4548 aa7.28□□□□□ -1.24
USH1C-208ENST00000529563 A0A0U1RQV1 116 aa7.27□□□□□ -1.25
USH1C-208ENST00000529563 TSPAN13O95857 204 aa7.27□□□□□ -1.25
USH1C-208ENST00000529563 KRTAP7-1Q8IUC3 87 aa7.27□□□□□ -1.25
USH1C-208ENST00000529563 PCP2Q8IVA1 136 aa7.27□□□□□ -1.25
USH1C-208ENST00000529563 RPL28P46779 137 aaKnown RBP7.26□□□□□ -1.25
USH1C-208ENST00000529563 UBE2AP49459 152 aa7.26□□□□□ -1.25
USH1C-208ENST00000529563 JOSD1Q15040 202 aaPredicted RBP7.26□□□□□ -1.25
USH1C-208ENST00000529563 SPANXB1Q9NS25 103 aaPredicted RBP7.26□□□□□ -1.25
USH1C-208ENST00000529563 PAM16Q9Y3D7 125 aa7.26□□□□□ -1.25
USH1C-208ENST00000529563 CBY1Q9Y3M2 126 aa7.26□□□□□ -1.25
USH1C-208ENST00000529563 SPATA45Q537H7 98 aa7.25□□□□□ -1.25
USH1C-208ENST00000529563 ADAMTSL4-AS1Q5T5F5 129 aa7.25□□□□□ -1.25
USH1C-208ENST00000529563 Q6ZVH6 145 aa7.25□□□□□ -1.25
USH1C-208ENST00000529563 OR13C6PQ8NH95 151 aa7.25□□□□□ -1.25
USH1C-208ENST00000529563 BCE1O60756 84 aa7.24□□□□□ -1.25
USH1C-208ENST00000529563 NDUFC2O95298 119 aa7.24□□□□□ -1.25
USH1C-208ENST00000529563 IFITM1P13164 125 aa7.24□□□□□ -1.25
USH1C-208ENST00000529563 LINC00308Q8TCZ7 52 aa7.24□□□□□ -1.25
USH1C-208ENST00000529563 SPANXCQ9NY87 97 aa7.24□□□□□ -1.25
USH1C-208ENST00000529563 TRBV10-2A0A0K0K1G8 114 aa7.23□□□□□ -1.25
USH1C-208ENST00000529563 KRTAP9-6A0A140TA67 174 aa7.23□□□□□ -1.25
USH1C-208ENST00000529563 DDTP30046 118 aa7.23□□□□□ -1.25
USH1C-208ENST00000529563 FAM19A1Q7Z5A9 133 aa7.23□□□□□ -1.25
USH1C-208ENST00000529563 TYMSOSQ8TAI1 123 aa7.23□□□□□ -1.25
USH1C-208ENST00000529563 SPANXDQ9BXN6 97 aa7.23□□□□□ -1.25
USH1C-208ENST00000529563 LOC107984156A0A0G2JMH3 177 aa7.22□□□□□ -1.25
USH1C-208ENST00000529563 ETDCA0A1B0GVM5 59 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms