RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SPTBP11277 2137 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 PI4KAP42356 2102 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 JMJD1CQ15652 2540 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 F8VRH5 84 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 I3L3M4 83 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 SPINK7P58062 85 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 ERHP84090 104 aaKnown RBP1.76□□□□□ -2.13
CD44-229ENST00000528672 PRO3102Q9H379 93 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 COL6A5A8TX70 2615 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 TET1Q8NFU7 2136 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 CELSR3Q9NYQ7 3312 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 CFAP46Q8IYW2 2715 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 TOGARAM1Q9Y4F4 1720 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 MDC1Q14676 2089 aaKnown RBP1.75□□□□□ -2.13
CD44-229ENST00000528672 FXYD3Q14802 87 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 COX7B2Q8TF08 81 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 UBL5Q9BZL1 73 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 TMEM14CQ9P0S9 112 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 SHROOM3Q8TF72 1996 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 NCOR2Q9Y618 2525 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 SEC16AO15027 2179 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 INTS1Q8N201 2190 aaKnown RBP1.75□□□□□ -2.13
CD44-229ENST00000528672 WDFY4Q6ZS81 3184 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 CFAP54Q96N23 3096 aa1.75□□□□□ -2.13
CD44-229ENST00000528672 KIAA0100Q14667 2235 aaKnown RBP1.74□□□□□ -2.13
CD44-229ENST00000528672 A0A0J9YX75 114 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 A0A1W2PNN7 141 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 M0R1W7 72 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 NDUFB1O75438 58 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 CTSGP08311 255 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 CCL3L1P16619 93 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 ZNF137PP52743 207 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 CCL18P55774 89 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 PDE6HQ13956 83 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 HCP5Q6MZN7 132 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 SPATA8Q6RVD6 105 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 ZGRF1Q86YA3 2104 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 WFDC9Q8NEX5 89 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 LINC00208Q96KT6 92 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 SPRR4Q96PI1 79 aa1.74□□□□□ -2.13
CD44-229ENST00000528672 TIMM8BQ9Y5J9 83 aaPredicted RBP1.74□□□□□ -2.13
CD44-229ENST00000528672 MAP1BP46821 2468 aaKnown RBP1.74□□□□□ -2.13
CD44-229ENST00000528672 BCORQ6W2J9 1755 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 IGKV3OR2-268A0A0C4DH90 116 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 TRBV6-1A0A0K0K1D8 114 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 SPRR5A0A1B0GTR4 108 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 ARL14EPLP0DKL9 152 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 LINC00322Q6ZN03 302 aaPredicted RBP1.73□□□□□ -2.13
CD44-229ENST00000528672 R4GMQ9 66 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 SPG11Q96JI7 2443 aa1.73□□□□□ -2.13
CD44-229ENST00000528672 TNRC6BQ9UPQ9 1833 aaKnown RBP1.73□□□□□ -2.13
CD44-229ENST00000528672 POLQO75417 2590 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 UBR5O95071 2799 aaPredicted RBP1.72□□□□□ -2.13
CD44-229ENST00000528672 ZFYVE26Q68DK2 2539 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 DCHS1Q96JQ0 3298 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 H0Y9P7 68 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 UQCR11O14957 56 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 NDUFA3O95167 84 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 LINC00304Q8N9R0 145 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 TEX15Q9BXT5 2789 aa1.72□□□□□ -2.13
CD44-229ENST00000528672 ARHGAP32A7KAX9 2087 aa1.71□□□□□ -2.13
CD44-229ENST00000528672 DNAJC13O75165 2243 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 PRRC2BQ5JSZ5 2229 aaKnown RBP1.71□□□□□ -2.14
CD44-229ENST00000528672 KIAA1109Q2LD37 5005 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 CACNA1DQ01668 2161 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 C5orf42Q9H799 3197 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 LINC00959A0A1B0GUT2 108 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 RNASE3P12724 160 aaKnown RBP1.71□□□□□ -2.14
CD44-229ENST00000528672 PDE6GP18545 87 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 ESPL1Q14674 2120 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 C10orf113Q5VZT2 155 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 ZNF625Q96I27 306 aaPredicted RBP1.71□□□□□ -2.14
CD44-229ENST00000528672 WFDC10AQ9H1F0 79 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 NBEAL2Q6ZNJ1 2754 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 CENPFP49454 3210 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 C4AP0C0L4 1744 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 FBN1P35555 2871 aaKnown RBP1.71□□□□□ -2.14
CD44-229ENST00000528672 NRAPQ86VF7 1730 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 CNOT1A5YKK6 2376 aaKnown RBP1.71□□□□□ -2.14
CD44-229ENST00000528672 CR1P17927 2039 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 MED12Q93074 2177 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 CCDC168Q8NDH2 2452 aa1.71□□□□□ -2.14
CD44-229ENST00000528672 LRRC37A3O60309 1634 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 A0A087WTM6 91 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 JMJD7-PLA2G4BH0Y9G9 81 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 IGLV3-1P01715 115 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 MGPP08493 103 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 RPS27LQ71UM5 84 aaKnown RBP1.7□□□□□ -2.14
CD44-229ENST00000528672 PATE1Q8WXA2 126 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 BIRC6Q9NR09 4857 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 TMEM167BQ9NRX6 74 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 PRO2289Q9P1D8 64 aa1.7□□□□□ -2.14
CD44-229ENST00000528672 SPEGQ15772 3267 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 USP34Q70CQ2 3546 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 NRXN2Q9P2S2 1712 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 TRGV4A0A0C4DH28 118 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 GAFA1Q96PS6 74 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 LINC00472Q9H8W2 130 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 KLK9Q9UKQ9 250 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 LMO7Q8WWI1 1683 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms