RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 NOTCH1P46531 2555 aa2.74□□□□□ -1.97
CD44-220ENST00000525688 IGLV2-18A0A075B6J9 118 aa2.74□□□□□ -1.97
CD44-220ENST00000525688 LY6EQ16553 131 aa2.74□□□□□ -1.97
CD44-220ENST00000525688 ARHGAP5-AS1Q96IT6 56 aa2.74□□□□□ -1.97
CD44-220ENST00000525688 WNK1Q9H4A3 2382 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 A0A0J9YX75 114 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 H3BRM9 83 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 FAUP35544 74 aaKnown RBP2.73□□□□□ -1.97
CD44-220ENST00000525688 KRTDAPP60985 99 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 SEC11AP67812 179 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 ADIRFQ15847 76 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 ZNF833PQ6ZTB9 187 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 Q8N6K4 173 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 TMEM254Q8TBM7 123 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 ST20Q9HBF5 79 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 ABRACLQ9P1F3 81 aa2.73□□□□□ -1.97
CD44-220ENST00000525688 IGLV4-60A0A075B6I1 120 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 TRBV6-7A0A0A0MS04 114 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 TRAV10A0A0B4J240 114 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 HMSDA8MTL9 139 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 SAA2P0DJI9 122 aaPredicted RBP2.72□□□□□ -1.97
CD44-220ENST00000525688 UBE2G1P62253 170 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 C5orf56Q8N8D9 126 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 FAM213BQ8TBF2 198 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 PPDPFLQ8WWR9 84 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 S100ZQ8WXG8 99 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 MGST2Q99735 147 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 LINC00474Q9P2X8 69 aa2.72□□□□□ -1.97
CD44-220ENST00000525688 NAP1L6A6NFF2 107 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 ERC2-IT1O76042 136 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 NDUFA3O95167 84 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 PRB2P02812 416 aaPredicted RBP2.71□□□□□ -1.98
CD44-220ENST00000525688 P0C880 135 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 HINT1P49773 126 aaPredicted RBP2.71□□□□□ -1.98
CD44-220ENST00000525688 MIR22HGQ0VDD5 57 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 RPL39P5Q59GN2 51 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 C9orf116Q5BN46 136 aaPredicted RBP2.71□□□□□ -1.98
CD44-220ENST00000525688 SERP2Q8N6R1 65 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 CYTL1Q9NRR1 136 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 CACFD1Q9UGQ2 172 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 SPCS1Q9Y6A9 102 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 TGP01266 2768 aa2.71□□□□□ -1.98
CD44-220ENST00000525688 DNAH3Q8TD57 4116 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 IGKV2-28A0A075B6P5 120 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 TCRBV4S1A1TA0A5B7 111 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 PSCAO43653 123 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 IGKV2D-28P01615 120 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 IGLC2P0DOY2 106 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 IGLC3P0DOY3 106 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 LINC00315P59091 139 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 C10orf99Q6UWK7 81 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 NDUFA11Q86Y39 141 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 OR10AG1Q8NH19 301 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 Q8TAT8 98 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 TRGV9Q99603 122 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 HIGD2AQ9BW72 106 aa2.7□□□□□ -1.98
CD44-220ENST00000525688 PRKDCP78527 4128 aaKnown RBP2.7□□□□□ -1.98
CD44-220ENST00000525688 TRBV10-3A0A0K0K1G6 114 aa2.69□□□□□ -1.98
CD44-220ENST00000525688 LRCOL1A6NCL2 159 aa2.69□□□□□ -1.98
CD44-220ENST00000525688 CFDP00746 253 aaPredicted RBP2.69□□□□□ -1.98
CD44-220ENST00000525688 RPL7L1Q6DKI1 246 aaKnown RBP2.69□□□□□ -1.98
CD44-220ENST00000525688 SPINT4Q6UDR6 99 aa2.69□□□□□ -1.98
CD44-220ENST00000525688 SCRT1Q9BWW7 348 aa2.69□□□□□ -1.98
CD44-220ENST00000525688 COL7A1Q02388 2944 aa2.69□□□□□ -1.98
CD44-220ENST00000525688 TMSB15BA0A087X1C1 80 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 TRAV13-2A0A0B4J235 113 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 TRAV12-1A0A0B4J245 112 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 A0A1W2PPM0 123 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 G3V318 75 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 NDUFC1O43677 76 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 PPYP01298 95 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 RNASE2P10153 161 aaKnown RBP2.68□□□□□ -1.98
CD44-220ENST00000525688 ETDBQ3ZM63 59 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 BVES-AS1Q5T3Y7 98 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 KRTAP26-1Q6PEX3 210 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 C2orf82Q6UX34 121 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 WFDC9Q8NEX5 89 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 CYP4F30PQ9H0H9 118 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 TNCP24821 2201 aa2.68□□□□□ -1.98
CD44-220ENST00000525688 CRYM-AS1A6NIL9 109 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 SYS1-DBNDD2H3BUS1 97 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 FXYD3Q14802 87 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.67□□□□□ -1.98
CD44-220ENST00000525688 ZNF818PQ6ZRF7 136 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 C9orf163Q8N9P6 203 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 ZNF431Q8TF32 576 aaPredicted RBP2.67□□□□□ -1.98
CD44-220ENST00000525688 FAM103A1Q9BTL3 118 aaKnown RBP2.67□□□□□ -1.98
CD44-220ENST00000525688 CYSTM1Q9H1C7 97 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 PSORS1C2Q9UIG4 136 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 R4GN34 69 aa2.67□□□□□ -1.98
CD44-220ENST00000525688 HCG22E2RYF7 251 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 PRB4P10163 310 aaPredicted RBP2.66□□□□□ -1.98
CD44-220ENST00000525688 FXYD4P59646 89 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 ERHP84090 104 aaKnown RBP2.66□□□□□ -1.98
CD44-220ENST00000525688 SSBP1Q04837 148 aaKnown RBP2.66□□□□□ -1.98
CD44-220ENST00000525688 PLGLAQ15195 96 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.66□□□□□ -1.98
CD44-220ENST00000525688 SPTSSBQ8NFR3 76 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 TMEM167AQ8TBQ9 72 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 SMIM4Q8WVI0 70 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms