RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 Q8NAQ8 132 aa2□□□□□ -2.09
CD44-217ENST00000525348 FDCSPQ8NFU4 85 aa2□□□□□ -2.09
CD44-217ENST00000525348 ZCCHC13Q8WW36 166 aaKnown RBP2□□□□□ -2.09
CD44-217ENST00000525348 PRR15LQ9BU68 103 aa2□□□□□ -2.09
CD44-217ENST00000525348 NDUFA4L2Q9NRX3 87 aa2□□□□□ -2.09
CD44-217ENST00000525348 RELNP78509 3460 aa2□□□□□ -2.09
CD44-217ENST00000525348 LAMA5O15230 3695 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 SPAG17Q6Q759 2223 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 UTP20O75691 2785 aaKnown RBP1.99□□□□□ -2.09
CD44-217ENST00000525348 SHANK1Q9Y566 2161 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 LAMA1P25391 3075 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 A8MWP4 228 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 H3BSH0 61 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 CCL22O00626 93 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 DNAL4O96015 105 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 IGHV1-69P01742 117 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 IGHV3-11P01762 117 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 CRPP02741 224 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 MIAQ16674 131 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 LUZP6Q538Z0 58 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 RNASE13Q5GAN3 156 aaKnown RBP1.99□□□□□ -2.09
CD44-217ENST00000525348 Q6ZQT0 140 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 C8orf17Q9NRJ1 99 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 TMEM14CQ9P0S9 112 aa1.99□□□□□ -2.09
CD44-217ENST00000525348 HELZ2Q9BYK8 2649 aaKnown RBP1.99□□□□□ -2.09
CD44-217ENST00000525348 ZNF462Q96JM2 2506 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 TEX15Q9BXT5 2789 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 TRAV12-3A0A0B4J271 114 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 TRBV6-1A0A0K0K1D8 114 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 IGLV3-25P01717 112 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 FXYD4P59646 89 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 KPRPQ5T749 579 aaPredicted RBP1.98□□□□□ -2.09
CD44-217ENST00000525348 CSAG1Q6PB30 78 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 Q9BRP9 147 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 TMEM14AQ9Y6G1 99 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 R4GMQ9 66 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 ANKRD17O75179 2603 aaKnown RBP1.98□□□□□ -2.09
CD44-217ENST00000525348 CEP295Q9C0D2 2601 aa1.98□□□□□ -2.09
CD44-217ENST00000525348 NBPF19A0A087WUL8 3843 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 SDK1Q7Z5N4 2213 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 FBN2P35556 2912 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 IGHV3-21A0A0B4J1V1 117 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 IGHV3-73A0A0B4J1V6 119 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 TRBV6-5A0A0K0K1A5 114 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 SAA2P0DJI9 122 aaPredicted RBP1.97□□□□□ -2.09
CD44-217ENST00000525348 ELOF1P60002 83 aaKnown RBP1.97□□□□□ -2.09
CD44-217ENST00000525348 CNBPP62633 177 aaKnown RBP1.97□□□□□ -2.09
CD44-217ENST00000525348 MIR22HGQ0VDD5 57 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 ZNF625Q96I27 306 aaPredicted RBP1.97□□□□□ -2.09
CD44-217ENST00000525348 C14orf132Q9NPU4 83 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 LINC01558Q9Y6Z2 57 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 USP9XQ93008 2570 aaPredicted RBP1.97□□□□□ -2.09
CD44-217ENST00000525348 ASCC3Q8N3C0 2202 aaKnown RBP1.97□□□□□ -2.09
CD44-217ENST00000525348 COL12A1Q99715 3063 aa1.97□□□□□ -2.09
CD44-217ENST00000525348 KALRNO60229 2985 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 DOPEY2Q9Y3R5 2298 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 A0A087WSZ3 146 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 IGHV3-15A0A0B4J1V0 119 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 TRAV21A0A0B4J279 112 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 NNATQ16517 81 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 C15orf56Q8N910 161 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 Q8TAT8 98 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 MUC7Q8TAX7 377 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 C20orf166-AS1Q96NR2 134 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 LINC00467Q9BRT7 94 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 HIGD2AQ9BW72 106 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 TTTY12Q9BZ98 90 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 COL27A1Q8IZC6 1860 aaPredicted RBP1.96□□□□□ -2.1
CD44-217ENST00000525348 ZFHX3Q15911 3703 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 CFAP46Q8IYW2 2715 aa1.96□□□□□ -2.1
CD44-217ENST00000525348 ALPK2Q86TB3 2170 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 CELSR3Q9NYQ7 3312 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 IGKV1D-42A0A075B6H8 117 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 IGHV7-4-1A0A0J9YVY3 117 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 C17orf98A8MV24 154 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 SPINK7P58062 85 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 FAM27BQ5VT28 67 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 KRTAP13-1Q8IUC0 172 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 CIRBP-AS1Q8TBR5 109 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 DOPEY1Q5JWR5 2465 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 CACNA1DQ01668 2161 aa1.95□□□□□ -2.1
CD44-217ENST00000525348 CNOT1A5YKK6 2376 aaKnown RBP1.94□□□□□ -2.1
CD44-217ENST00000525348 FBN3Q75N90 2809 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 ATMQ13315 3056 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 A0A1B0GVX0 72 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 BPY2O14599 106 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 MSMBP08118 114 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 RPS27P42677 84 aaKnown RBP1.94□□□□□ -2.1
CD44-217ENST00000525348 DEFB113Q30KQ7 82 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 KRTAP26-1Q6PEX3 210 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.94□□□□□ -2.1
CD44-217ENST00000525348 NTM-AS1Q6ZSK4 140 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 CAMK2N2Q96S95 79 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 UBL5Q9BZL1 73 aa1.94□□□□□ -2.1
CD44-217ENST00000525348 URB1O60287 2271 aaKnown RBP1.94□□□□□ -2.1
CD44-217ENST00000525348 UBR5O95071 2799 aaPredicted RBP1.93□□□□□ -2.1
CD44-217ENST00000525348 MYO9AB2RTY4 2548 aa1.93□□□□□ -2.1
CD44-217ENST00000525348 KNTC1P50748 2209 aa1.93□□□□□ -2.1
CD44-217ENST00000525348 IGKV1D-37A0A075B6S9 117 aa1.93□□□□□ -2.1
CD44-217ENST00000525348 IGKV3D-11A0A0A0MRZ8 115 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms