RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 E9PLD3 99 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 OXTP01178 125 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 SMIM13P0DJ93 91 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 KRTAP10-4P60372 401 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 S100A12P80511 92 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 SPINK6Q6UWN8 80 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 DIRC1Q969H9 104 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 DNAH5Q8TE73 4624 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 APOBP04114 4563 aaKnown RBP3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 TMEM238LA0A1B0GVL6 79 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 KRTAP29-1A8MX34 341 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 HSBP1L1C9JCN9 74 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 IGLV7-43P04211 117 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 TSPEAR-AS2P59090 65 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 CTAG1AP78358 180 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 BOD1L2Q8IYS8 172 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 HIST3H2BBQ8N257 126 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 MIR7-3HGQ8N6C7 128 aa3.34□□□□□ -1.87
HMGB1P40-201ENST00000525121 IGKV2-28A0A075B6P5 120 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 RPL37AP8A6NKH3 93 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 ZNF815PA8K554 130 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 BCE1O60756 84 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 IGKV2D-28P01615 120 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 VPREB1P12018 145 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 RPL28P46779 137 aaKnown RBP3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 UBE2AP49459 152 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 HNRNPA3P51991 378 aaKnown RBP3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 SNRPEP62304 92 aaKnown RBP3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 SCGB1D4Q6XE38 83 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 KRTAP7-1Q8IUC3 87 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 COPS9Q8WXC6 57 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 LINC00167Q96N53 147 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 HIST1H2BLQ99880 126 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 RYR1P21817 5038 aa3.33□□□□□ -1.88
HMGB1P40-201ENST00000525121 IGKV2D-26A0A0A0MRZ7 120 aa3.32□□□□□ -1.88
HMGB1P40-201ENST00000525121 A0A0J9YXY3 114 aa3.32□□□□□ -1.88
HMGB1P40-201ENST00000525121 M0R378 163 aa3.32□□□□□ -1.88
HMGB1P40-201ENST00000525121 ATOH7Q8N100 152 aa3.32□□□□□ -1.88
HMGB1P40-201ENST00000525121 IGLV1-50A0A075B6I6 118 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 TMEM238C9JI98 176 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 H0Y9J4 135 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 NCR3O14931 201 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 ZNF861PO60384 105 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 TIMM17BO60830 172 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 SCGB1D1O95968 90 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 SRSF9Q13242 221 aaKnown RBP eCLIP3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 KRTAP11-1Q8IUC1 163 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 DAND5Q8N907 189 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 SPANXB1Q9NS25 103 aaPredicted RBP3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 CBY1Q9Y3M2 126 aa3.31□□□□□ -1.88
HMGB1P40-201ENST00000525121 TRBV10-2A0A0K0K1G8 114 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 PRYO14603 147 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 NDUFC2O95298 119 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 NPC2P61916 151 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 S100A7L2Q5SY68 101 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 FAM19A1Q7Z5A9 133 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 TMEM126AQ9H061 195 aa3.3□□□□□ -1.88
HMGB1P40-201ENST00000525121 LOC107984156A0A0G2JMH3 177 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 ETDCA0A1B0GVM5 59 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 C5orf52A6NGY3 159 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 A6NJY4 79 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 DDTP30046 118 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 ANKRD39Q53RE8 183 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 ARL17AQ8IVW1 177 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 LINC01600Q96MT4 127 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 SPANXCQ9NY87 97 aa3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 SRRM2Q9UQ35 2752 aaKnown RBP3.29□□□□□ -1.88
HMGB1P40-201ENST00000525121 TRBV10-3A0A0K0K1G6 114 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 IFITM1P13164 125 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 RPL13AP40429 203 aaKnown RBP3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 HINT1P49773 126 aaPredicted RBP3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 PRLHP81277 87 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 Q6ZVH6 145 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 Q8NDZ9 215 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 OR13C6PQ8NH95 151 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 LINC00308Q8TCZ7 52 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 SPANXDQ9BXN6 97 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 TTTY13Q9BZ97 58 aa3.28□□□□□ -1.88
HMGB1P40-201ENST00000525121 FLG2Q5D862 2391 aaPredicted RBP3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 DNAH8Q96JB1 4490 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 TRAV23DV6A0A075B6W5 121 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 ADAMTSL4-AS1Q5T5F5 129 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 PCP2Q8IVA1 136 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 LINC00518Q8N0U6 118 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 LINC00337Q8N6G1 96 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 LITAFQ99732 161 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 HIGD2AQ9BW72 106 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 KCNQ1DNQ9H478 68 aa3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 ZNF706Q9Y5V0 76 aaPredicted RBP3.27□□□□□ -1.89
HMGB1P40-201ENST00000525121 IGLV6-57P01721 117 aa3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 JOSD1Q15040 202 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 LCE2DQ5TA82 110 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 SOSTDC1Q6X4U4 206 aa3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 VAMP8Q9BV40 100 aa3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 DMBT1Q9UGM3 2413 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 FAT1Q14517 4588 aa3.26□□□□□ -1.89
HMGB1P40-201ENST00000525121 A6NDN8 102 aa3.25□□□□□ -1.89
HMGB1P40-201ENST00000525121 ZNF73O43830 326 aaPredicted RBP3.25□□□□□ -1.89
HMGB1P40-201ENST00000525121 MT1HL1P0DM35 61 aa3.25□□□□□ -1.89
HMGB1P40-201ENST00000525121 CRYGAP11844 174 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 173.5 ms