RNA–Protein interactions for RNA: ENST00000522243.5

SDCBP-209, Transcript of syndecan binding protein, humanhuman

TSL 5

Gene SDCBP, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-209ENST00000522243 IFI27L1Q96BM0 104 aa12.18□□□□□ -0.46
SDCBP-209ENST00000522243 LINC00158P58513 81 aa12.17□□□□□ -0.46
SDCBP-209ENST00000522243 CHCHD1Q96BP2 118 aaKnown RBP12.17□□□□□ -0.46
SDCBP-209ENST00000522243 TMEM126AQ9H061 195 aa12.17□□□□□ -0.46
SDCBP-209ENST00000522243 TMEM223A0PJW6 202 aa12.16□□□□□ -0.46
SDCBP-209ENST00000522243 KRTAP13-2Q52LG2 175 aa12.16□□□□□ -0.46
SDCBP-209ENST00000522243 SFTA2Q6UW10 78 aa12.16□□□□□ -0.46
SDCBP-209ENST00000522243 TRAV12-1A0A0B4J245 112 aa12.14□□□□□ -0.47
SDCBP-209ENST00000522243 M0R378 163 aa12.14□□□□□ -0.47
SDCBP-209ENST00000522243 FAM19A2Q8N3H0 131 aa12.13□□□□□ -0.47
SDCBP-209ENST00000522243 CBLN2Q8IUK8 224 aa12.12□□□□□ -0.47
SDCBP-209ENST00000522243 HSBP1O75506 76 aa12.11□□□□□ -0.47
SDCBP-209ENST00000522243 SMIM13P0DJ93 91 aa12.1□□□□□ -0.47
SDCBP-209ENST00000522243 FAM229BQ4G0N7 80 aa12.1□□□□□ -0.47
SDCBP-209ENST00000522243 H0Y8G0 127 aa12.09□□□□□ -0.47
SDCBP-209ENST00000522243 MEIG1Q5JSS6 88 aa12.09□□□□□ -0.47
SDCBP-209ENST00000522243 ATP6V1G1O75348 118 aa12.08□□□□□ -0.48
SDCBP-209ENST00000522243 IGKV2D-26A0A0A0MRZ7 120 aa12.07□□□□□ -0.48
SDCBP-209ENST00000522243 TRGC2P03986 189 aa12.07□□□□□ -0.48
SDCBP-209ENST00000522243 HIGD2AQ9BW72 106 aa12.07□□□□□ -0.48
SDCBP-209ENST00000522243 LINC00304Q8N9R0 145 aa12.06□□□□□ -0.48
SDCBP-209ENST00000522243 PLEKHB2Q96CS7 222 aa12.06□□□□□ -0.48
SDCBP-209ENST00000522243 BOD1L2Q8IYS8 172 aa12.05□□□□□ -0.48
SDCBP-209ENST00000522243 MIR7-3HGQ8N6C7 128 aa12.05□□□□□ -0.48
SDCBP-209ENST00000522243 RETNLBQ9BQ08 111 aa12.05□□□□□ -0.48
SDCBP-209ENST00000522243 NDUFA12Q9UI09 145 aa12.04□□□□□ -0.48
SDCBP-209ENST00000522243 NCR3O14931 201 aa12.03□□□□□ -0.48
SDCBP-209ENST00000522243 LINC00310P59036 64 aa12.02□□□□□ -0.49
SDCBP-209ENST00000522243 HERV-K104P63124 156 aa12.02□□□□□ -0.49
SDCBP-209ENST00000522243 C3orf22Q8N5N4 141 aa12.02□□□□□ -0.49
SDCBP-209ENST00000522243 SERF1AO75920 110 aa12.01□□□□□ -0.49
SDCBP-209ENST00000522243 LEPROTL1O95214 131 aa12.01□□□□□ -0.49
SDCBP-209ENST00000522243 MYMXA0A1B0GTQ4 84 aa11.99□□□□□ -0.49
SDCBP-209ENST00000522243 TSPEAR-AS2P59090 65 aa11.99□□□□□ -0.49
SDCBP-209ENST00000522243 PRYO14603 147 aa11.98□□□□□ -0.49
SDCBP-209ENST00000522243 SPRR4Q96PI1 79 aa11.98□□□□□ -0.49
SDCBP-209ENST00000522243 LINC00587B1AMM8 73 aa11.97□□□□□ -0.49
SDCBP-209ENST00000522243 FABP4P15090 132 aa11.97□□□□□ -0.49
SDCBP-209ENST00000522243 LEPROTO15243 131 aa11.96□□□□□ -0.49
SDCBP-209ENST00000522243 SLC7A5P1Q8MH63 180 aa11.96□□□□□ -0.49
SDCBP-209ENST00000522243 DAND5Q8N907 189 aa11.96□□□□□ -0.49
SDCBP-209ENST00000522243 PMCHL2Q9BQD1 86 aa11.96□□□□□ -0.49
SDCBP-209ENST00000522243 MAP1LC3CQ9BXW4 147 aa11.96□□□□□ -0.49
SDCBP-209ENST00000522243 TRBV10-3A0A0K0K1G6 114 aa11.95□□□□□ -0.5
SDCBP-209ENST00000522243 SPRR1AP35321 89 aa11.94□□□□□ -0.5
SDCBP-209ENST00000522243 SMCR5Q8TEV8 140 aa11.94□□□□□ -0.5
SDCBP-209ENST00000522243 KCNQ1DNQ9H478 68 aa11.94□□□□□ -0.5
SDCBP-209ENST00000522243 LINC00337Q8N6G1 96 aa11.93□□□□□ -0.5
SDCBP-209ENST00000522243 HSPB8Q9UJY1 196 aa11.93□□□□□ -0.5
SDCBP-209ENST00000522243 ETDCA0A1B0GVM5 59 aa11.92□□□□□ -0.5
SDCBP-209ENST00000522243 PLNP26678 52 aa11.92□□□□□ -0.5
SDCBP-209ENST00000522243 ZNF706Q9Y5V0 76 aaPredicted RBP11.92□□□□□ -0.5
SDCBP-209ENST00000522243 KRTAP4-16G5E9R7 235 aaPredicted RBP11.91□□□□□ -0.5
SDCBP-209ENST00000522243 J3QQQ9 107 aa11.91□□□□□ -0.5
SDCBP-209ENST00000522243 DPM2O94777 84 aa11.91□□□□□ -0.5
SDCBP-209ENST00000522243 PPDPFQ9H3Y8 114 aa11.91□□□□□ -0.5
SDCBP-209ENST00000522243 COLCA2A8K830 154 aa11.9□□□□□ -0.5
SDCBP-209ENST00000522243 HERVK_113P61574 105 aa11.9□□□□□ -0.5
SDCBP-209ENST00000522243 IGLV7-46A0A075B6I9 117 aa11.89□□□□□ -0.51
SDCBP-209ENST00000522243 IGKCP01834 107 aa11.89□□□□□ -0.51
SDCBP-209ENST00000522243 LGALS3P17931 250 aaKnown RBP11.88□□□□□ -0.51
SDCBP-209ENST00000522243 LOC107984156A0A0G2JMH3 177 aa11.87□□□□□ -0.51
SDCBP-209ENST00000522243 DDTP30046 118 aa11.87□□□□□ -0.51
SDCBP-209ENST00000522243 S100A12P80511 92 aa11.87□□□□□ -0.51
SDCBP-209ENST00000522243 ARL17AQ8IVW1 177 aa11.87□□□□□ -0.51
SDCBP-209ENST00000522243 CTAG1AP78358 180 aa11.86□□□□□ -0.51
SDCBP-209ENST00000522243 SPAG11AQ6PDA7 123 aa11.86□□□□□ -0.51
SDCBP-209ENST00000522243 B5MCH6 92 aa11.85□□□□□ -0.51
SDCBP-209ENST00000522243 NMUP48645 174 aa11.85□□□□□ -0.51
SDCBP-209ENST00000522243 Q8NBF4 154 aa11.85□□□□□ -0.51
SDCBP-209ENST00000522243 MIEN1Q9BRT3 115 aa11.85□□□□□ -0.51
SDCBP-209ENST00000522243 CDIP1Q9H305 208 aa11.85□□□□□ -0.51
SDCBP-209ENST00000522243 NPC2P61916 151 aa11.84□□□□□ -0.51
SDCBP-209ENST00000522243 TPRXLQ17RH7 258 aa11.84□□□□□ -0.51
SDCBP-209ENST00000522243 C4orf48Q5BLP8 95 aa11.84□□□□□ -0.51
SDCBP-209ENST00000522243 GAGE2AQ6NT46 116 aa11.84□□□□□ -0.51
SDCBP-209ENST00000522243 TRBV10-2A0A0K0K1G8 114 aa11.83□□□□□ -0.52
SDCBP-209ENST00000522243 ERC2-IT1O76042 136 aa11.83□□□□□ -0.52
SDCBP-209ENST00000522243 SPANXB1Q9NS25 103 aaPredicted RBP11.82□□□□□ -0.52
SDCBP-209ENST00000522243 S100A7L2Q5SY68 101 aa11.81□□□□□ -0.52
SDCBP-209ENST00000522243 SOSTDC1Q6X4U4 206 aa11.81□□□□□ -0.52
SDCBP-209ENST00000522243 A0A0J9YXY3 114 aa11.8□□□□□ -0.52
SDCBP-209ENST00000522243 EIF4EBP3O60516 100 aaPredicted RBP11.8□□□□□ -0.52
SDCBP-209ENST00000522243 LINC00483Q53H64 154 aa11.8□□□□□ -0.52
SDCBP-209ENST00000522243 Q9BRP9 147 aa11.8□□□□□ -0.52
SDCBP-209ENST00000522243 ADAMTSL4-AS1Q5T5F5 129 aa11.79□□□□□ -0.52
SDCBP-209ENST00000522243 A0A0U1RQV1 116 aa11.78□□□□□ -0.52
SDCBP-209ENST00000522243 E9PLD3 99 aa11.78□□□□□ -0.52
SDCBP-209ENST00000522243 NDUFC2O95298 119 aa11.78□□□□□ -0.52
SDCBP-209ENST00000522243 IGLV9-49A0A0B4J1Y8 123 aa11.77□□□□□ -0.53
SDCBP-209ENST00000522243 IGLV6-57P01721 117 aa11.77□□□□□ -0.53
SDCBP-209ENST00000522243 Q6ZRX8 168 aa11.77□□□□□ -0.53
SDCBP-209ENST00000522243 SYS1-DBNDD2H3BUS1 97 aa11.76□□□□□ -0.53
SDCBP-209ENST00000522243 MOBPQ13875 183 aa11.76□□□□□ -0.53
SDCBP-209ENST00000522243 MUC2Q02817 5179 aa11.76□□□□□ -0.53
SDCBP-209ENST00000522243 TRAV23DV6A0A075B6W5 121 aa11.75□□□□□ -0.53
SDCBP-209ENST00000522243 HIST1H2BKO60814 126 aa11.75□□□□□ -0.53
SDCBP-209ENST00000522243 HIST1H2BJP06899 126 aa11.75□□□□□ -0.53
SDCBP-209ENST00000522243 HIST1H2BOP23527 126 aa11.75□□□□□ -0.53
SDCBP-209ENST00000522243 HIST1H2BBP33778 126 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms