RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 UBE2AP49459 152 aa17.61■□□□□ 0.41
SYNPO-203ENST00000518872 LINC00158P58513 81 aa17.61■□□□□ 0.41
SYNPO-203ENST00000518872 COLCA2A8K830 154 aa17.59■□□□□ 0.41
SYNPO-203ENST00000518872 HERV-K104P63124 156 aa17.59■□□□□ 0.41
SYNPO-203ENST00000518872 TMEM126AQ9H061 195 aa17.59■□□□□ 0.41
SYNPO-203ENST00000518872 A0A087X002 238 aa17.57■□□□□ 0.4
SYNPO-203ENST00000518872 CRYGAP11844 174 aa17.56■□□□□ 0.4
SYNPO-203ENST00000518872 LINC00587B1AMM8 73 aa17.54■□□□□ 0.4
SYNPO-203ENST00000518872 M0R378 163 aa17.54■□□□□ 0.4
SYNPO-203ENST00000518872 HSPB8Q9UJY1 196 aa17.54■□□□□ 0.4
SYNPO-203ENST00000518872 TMEM238C9JI98 176 aa17.53■□□□□ 0.4
SYNPO-203ENST00000518872 SMIM13P0DJ93 91 aa17.53■□□□□ 0.4
SYNPO-203ENST00000518872 PLNP26678 52 aa17.53■□□□□ 0.4
SYNPO-203ENST00000518872 NDUFA12Q9UI09 145 aa17.53■□□□□ 0.4
SYNPO-203ENST00000518872 A0A0U1RRA0 63 aa17.52■□□□□ 0.4
SYNPO-203ENST00000518872 H0Y8G0 127 aa17.52■□□□□ 0.4
SYNPO-203ENST00000518872 FAM229BQ4G0N7 80 aa17.52■□□□□ 0.4
SYNPO-203ENST00000518872 MEIG1Q5JSS6 88 aa17.52■□□□□ 0.4
SYNPO-203ENST00000518872 FAM19A1Q7Z5A9 133 aa17.51■□□□□ 0.39
SYNPO-203ENST00000518872 MYMXA0A1B0GTQ4 84 aa17.5■□□□□ 0.39
SYNPO-203ENST00000518872 PRLHP81277 87 aa17.5■□□□□ 0.39
SYNPO-203ENST00000518872 ATP6V1G1O75348 118 aa17.49■□□□□ 0.39
SYNPO-203ENST00000518872 MIR7-3HGQ8N6C7 128 aa17.49■□□□□ 0.39
SYNPO-203ENST00000518872 LEPROTO15243 131 aa17.48■□□□□ 0.39
SYNPO-203ENST00000518872 TYMSOSQ8TAI1 123 aa17.48■□□□□ 0.39
SYNPO-203ENST00000518872 PLEKHB2Q96CS7 222 aa17.47■□□□□ 0.39
SYNPO-203ENST00000518872 MAP1LC3CQ9BXW4 147 aa17.46■□□□□ 0.39
SYNPO-203ENST00000518872 IGKV2D-26A0A0A0MRZ7 120 aa17.45■□□□□ 0.38
SYNPO-203ENST00000518872 DPM2O94777 84 aa17.45■□□□□ 0.38
SYNPO-203ENST00000518872 FABP4P15090 132 aa17.45■□□□□ 0.38
SYNPO-203ENST00000518872 TSPEAR-AS2P59090 65 aa17.45■□□□□ 0.38
SYNPO-203ENST00000518872 BOD1L2Q8IYS8 172 aa17.45■□□□□ 0.38
SYNPO-203ENST00000518872 LPAP08519 4548 aa17.44■□□□□ 0.38
SYNPO-203ENST00000518872 ANAPC11Q9NYG5 84 aa17.44■□□□□ 0.38
SYNPO-203ENST00000518872 KRTAP13-2Q52LG2 175 aa17.43■□□□□ 0.38
SYNPO-203ENST00000518872 LOC107984156A0A0G2JMH3 177 aa17.42■□□□□ 0.38
SYNPO-203ENST00000518872 HERVK_113P61574 105 aa17.42■□□□□ 0.38
SYNPO-203ENST00000518872 ARL17AQ8IVW1 177 aa17.42■□□□□ 0.38
SYNPO-203ENST00000518872 IGKCP01834 107 aa17.41■□□□□ 0.38
SYNPO-203ENST00000518872 J3QQQ9 107 aa17.4■□□□□ 0.38
SYNPO-203ENST00000518872 PRYO14603 147 aa17.4■□□□□ 0.38
SYNPO-203ENST00000518872 NMUP48645 174 aa17.4■□□□□ 0.38
SYNPO-203ENST00000518872 RNF213Q63HN8 5207 aa17.39■□□□□ 0.37
SYNPO-203ENST00000518872 SPRR1AP35321 89 aa17.38■□□□□ 0.37
SYNPO-203ENST00000518872 KCNQ1DNQ9H478 68 aa17.38■□□□□ 0.37
SYNPO-203ENST00000518872 PMCHL2Q9BQD1 86 aa17.37■□□□□ 0.37
SYNPO-203ENST00000518872 LINC00337Q8N6G1 96 aa17.36■□□□□ 0.37
SYNPO-203ENST00000518872 NCR3O14931 201 aa17.35■□□□□ 0.37
SYNPO-203ENST00000518872 PRR4Q16378 134 aa17.35■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BKO60814 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 TSPAN13O95857 204 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BJP06899 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BOP23527 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BBP33778 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BDP58876 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BCP62807 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST2H2BEQ16778 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BHQ93079 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BNQ99877 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIST1H2BMQ99879 126 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 HIGD2AQ9BW72 106 aa17.34■□□□□ 0.37
SYNPO-203ENST00000518872 KRTAP4-16G5E9R7 235 aaPredicted RBP17.32■□□□□ 0.36
SYNPO-203ENST00000518872 LGALS3P17931 250 aaKnown RBP17.32■□□□□ 0.36
SYNPO-203ENST00000518872 CTAG1AP78358 180 aa17.32■□□□□ 0.36
SYNPO-203ENST00000518872 TRBV10-3A0A0K0K1G6 114 aa17.3■□□□□ 0.36
SYNPO-203ENST00000518872 TRBV10-2A0A0K0K1G8 114 aa17.3■□□□□ 0.36
SYNPO-203ENST00000518872 LINC00304Q8N9R0 145 aa17.3■□□□□ 0.36
SYNPO-203ENST00000518872 DAND5Q8N907 189 aa17.29■□□□□ 0.36
SYNPO-203ENST00000518872 SPRR4Q96PI1 79 aa17.29■□□□□ 0.36
SYNPO-203ENST00000518872 E9PLD3 99 aa17.28■□□□□ 0.36
SYNPO-203ENST00000518872 SYS1-DBNDD2H3BUS1 97 aa17.27■□□□□ 0.36
SYNPO-203ENST00000518872 ZNF706Q9Y5V0 76 aaPredicted RBP17.27■□□□□ 0.36
SYNPO-203ENST00000518872 S100A12P80511 92 aa17.26■□□□□ 0.35
SYNPO-203ENST00000518872 NDUFC2O95298 119 aa17.25■□□□□ 0.35
SYNPO-203ENST00000518872 ETDCA0A1B0GVM5 59 aa17.24■□□□□ 0.35
SYNPO-203ENST00000518872 MIEN1Q9BRT3 115 aa17.24■□□□□ 0.35
SYNPO-203ENST00000518872 SPANXB1Q9NS25 103 aaPredicted RBP17.24■□□□□ 0.35
SYNPO-203ENST00000518872 LINC01545Q5VT33 79 aa17.22■□□□□ 0.35
SYNPO-203ENST00000518872 A0A0J9YXY3 114 aa17.21■□□□□ 0.35
SYNPO-203ENST00000518872 DDTP30046 118 aa17.21■□□□□ 0.35
SYNPO-203ENST00000518872 C3orf22Q8N5N4 141 aa17.2■□□□□ 0.34
SYNPO-203ENST00000518872 PET117Q6UWS5 81 aa17.19■□□□□ 0.34
SYNPO-203ENST00000518872 SMCR5Q8TEV8 140 aa17.19■□□□□ 0.34
SYNPO-203ENST00000518872 COA6Q5JTJ3 125 aaKnown RBP17.18■□□□□ 0.34
SYNPO-203ENST00000518872 B5MCH6 92 aa17.17■□□□□ 0.34
SYNPO-203ENST00000518872 IGLV6-57P01721 117 aa17.16■□□□□ 0.34
SYNPO-203ENST00000518872 ADAMTSL4-AS1Q5T5F5 129 aa17.16■□□□□ 0.34
SYNPO-203ENST00000518872 SOSTDC1Q6X4U4 206 aa17.16■□□□□ 0.34
SYNPO-203ENST00000518872 LINC00483Q53H64 154 aa17.13■□□□□ 0.33
SYNPO-203ENST00000518872 SPAG11AQ6PDA7 123 aa17.13■□□□□ 0.33
SYNPO-203ENST00000518872 EIF4EBP3O60516 100 aaPredicted RBP17.11■□□□□ 0.33
SYNPO-203ENST00000518872 TIMM17BO60830 172 aa17.11■□□□□ 0.33
SYNPO-203ENST00000518872 S100A7L2Q5SY68 101 aa17.11■□□□□ 0.33
SYNPO-203ENST00000518872 Q6ZRX8 168 aa17.11■□□□□ 0.33
SYNPO-203ENST00000518872 LITAFQ99732 161 aa17.1■□□□□ 0.33
SYNPO-203ENST00000518872 C3orf79P0CE67 100 aa17.09■□□□□ 0.33
SYNPO-203ENST00000518872 RETNLBQ9BQ08 111 aa17.07■□□□□ 0.32
SYNPO-203ENST00000518872 Q9BRP9 147 aa17.07■□□□□ 0.32
SYNPO-203ENST00000518872 TRAV23DV6A0A075B6W5 121 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 205 ms