RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	IFI27	P40305	119 aa	Predicted RBP	0.74	□□□□□ -2.29
MATR3-223	ENST00000514402		Q5BKY6	102 aa		0.74	□□□□□ -2.29
MATR3-223	ENST00000514402		Q8IZM0	81 aa		0.74	□□□□□ -2.29
MATR3-223	ENST00000514402	SCN11A	Q9UI33	1791 aa		0.74	□□□□□ -2.29
MATR3-223	ENST00000514402	ARFGEF2	Q9Y6D5	1785 aa		0.74	□□□□□ -2.29
MATR3-223	ENST00000514402	POLR1A	O95602	1720 aa	Predicted RBP	0.74	□□□□□ -2.29
MATR3-223	ENST00000514402	DUOX2	Q9NRD8	1548 aa		0.74	□□□□□ -2.29
MATR3-223	ENST00000514402	QSER1	Q2KHR3	1735 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	UMAD1	C9J7I0	102 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	NDUFB1	O75438	58 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	COX7B	P24311	80 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	DEFB123	Q8N688	67 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	AHNAK	Q09666	5890 aa	Known RBP	0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	NOTCH1	P46531	2555 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	ERICH3	Q5RHP9	1530 aa		0.73	□□□□□ -2.29
MATR3-223	ENST00000514402	CACNA1H	O95180	2353 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	GOLGA4	Q13439	2230 aa	Known RBP	0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	BIVM-ERCC5	R4GMW8	1640 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	SMIM31	A0A1B0GVY4	71 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402		K7EQZ3	153 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	IFI6	P09912	130 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	HEPN1	Q6WQI6	88 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	CRIPT	Q9P021	101 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	CD163L1	Q9NR16	1453 aa		0.72	□□□□□ -2.29
MATR3-223	ENST00000514402	FBN2	P35556	2912 aa		0.71	□□□□□ -2.29
MATR3-223	ENST00000514402	MROH1	Q8NDA8	1641 aa		0.71	□□□□□ -2.3
MATR3-223	ENST00000514402	MADD	Q8WXG6	1647 aa		0.71	□□□□□ -2.3
MATR3-223	ENST00000514402	SPTY2D1-AS1	A0A0U1RR47	76 aa		0.71	□□□□□ -2.3
MATR3-223	ENST00000514402	CFAP43	Q8NDM7	1665 aa		0.71	□□□□□ -2.3
MATR3-223	ENST00000514402	TTC28	Q96AY4	2481 aa		0.71	□□□□□ -2.3
MATR3-223	ENST00000514402	ITSN1	Q15811	1721 aa		0.7	□□□□□ -2.3
MATR3-223	ENST00000514402	DOT1L	Q8TEK3	1739 aa		0.7	□□□□□ -2.3
MATR3-223	ENST00000514402		H3BVH4	76 aa		0.7	□□□□□ -2.3
MATR3-223	ENST00000514402	NREP	Q16612	68 aa		0.7	□□□□□ -2.3
MATR3-223	ENST00000514402	USMG5	Q96IX5	58 aa		0.7	□□□□□ -2.3
MATR3-223	ENST00000514402	HILPDA	Q9Y5L2	63 aa		0.7	□□□□□ -2.3
MATR3-223	ENST00000514402	COL14A1	Q05707	1796 aa	Known RBP	0.7	□□□□□ -2.3
MATR3-223	ENST00000514402	URB1	O60287	2271 aa	Known RBP	0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	TIAM2	Q8IVF5	1701 aa		0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	ASXL1	Q8IXJ9	1541 aa		0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	FMN2	Q9NZ56	1722 aa		0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	UBR3	Q6ZT12	1888 aa		0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	ASH1L	Q9NR48	2969 aa	Known RBP	0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	LMTK2	Q8IWU2	1503 aa		0.69	□□□□□ -2.3
MATR3-223	ENST00000514402	ABCA9	Q8IUA7	1624 aa		0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	EIF2AK4	Q9P2K8	1649 aa	Known RBP	0.68	□□□□□ -2.3
MATR3-223	ENST00000514402		I3L3M4	83 aa		0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	COX6B1	P14854	86 aa		0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	HMGA1	P17096	107 aa	Known RBP	0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	CDC42BPG	Q6DT37	1551 aa		0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	INO80	Q9ULG1	1556 aa	Predicted RBP	0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	EFCAB5	A4FU69	1503 aa		0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	BCOR	Q6W2J9	1755 aa		0.68	□□□□□ -2.3
MATR3-223	ENST00000514402	PLCE1	Q9P212	2302 aa		0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	RICTOR	Q6R327	1708 aa		0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	PARP4	Q9UKK3	1724 aa	Known RBP	0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	COX8A	P10176	69 aa		0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	RPL38	P63173	70 aa	Known RBP	0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	WIZ	O95785	1651 aa		0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	PREX1	Q8TCU6	1659 aa		0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	CIC	Q96RK0	1608 aa	Predicted RBP	0.67	□□□□□ -2.3
MATR3-223	ENST00000514402	CACNA1E	Q15878	2313 aa		0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	PLCH1	Q4KWH8	1693 aa		0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	C2CD3	Q4AC94	2353 aa		0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	LCE6A	A0A183	80 aa		0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	CPSF4L	A6NMK7	179 aa	Known RBP	0.66	□□□□□ -2.3
MATR3-223	ENST00000514402		Q5VSD8	79 aa		0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	MRPL34	Q9BQ48	92 aa	Known RBP	0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	NWD1	Q149M9	1564 aa		0.66	□□□□□ -2.3
MATR3-223	ENST00000514402	ANKRD50	Q9ULJ7	1429 aa		0.65	□□□□□ -2.3
MATR3-223	ENST00000514402	DOPEY2	Q9Y3R5	2298 aa		0.65	□□□□□ -2.31
MATR3-223	ENST00000514402	KRTAP19-3	Q7Z4W3	81 aa		0.65	□□□□□ -2.31
MATR3-223	ENST00000514402	SPTBN2	O15020	2390 aa		0.65	□□□□□ -2.31
MATR3-223	ENST00000514402	POLQ	O75417	2590 aa		0.65	□□□□□ -2.31
MATR3-223	ENST00000514402	DIP2A	Q14689	1571 aa		0.65	□□□□□ -2.31
MATR3-223	ENST00000514402	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.65	□□□□□ -2.31
MATR3-223	ENST00000514402	USF3	Q68DE3	2245 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	NDUFA4	O00483	81 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	SPRR1B	P22528	89 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	SPRR1A	P35321	89 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	GNG13	Q9P2W3	67 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	MEGF8	Q7Z7M0	2845 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	TSC2	P49815	1807 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	CCDC180	Q9P1Z9	1646 aa		0.64	□□□□□ -2.31
MATR3-223	ENST00000514402	ATXN8	Q156A1	80 aa		0.63	□□□□□ -2.31
MATR3-223	ENST00000514402	FXYD6	Q9H0Q3	95 aa		0.63	□□□□□ -2.31
MATR3-223	ENST00000514402	NES	P48681	1621 aa		0.63	□□□□□ -2.31
MATR3-223	ENST00000514402	TNRC6C	Q9HCJ0	1690 aa	Known RBP	0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	F8	P00451	2351 aa		0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	NRAP	Q86VF7	1730 aa		0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	DEFB105A	Q8NG35	78 aa		0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	APLN	Q9ULZ1	77 aa		0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	0.62	□□□□□ -2.31	5e-13	■■■■□ 22.1
MATR3-223	ENST00000514402	HFM1	A2PYH4	1435 aa		0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	NHS	Q6T4R5	1651 aa		0.62	□□□□□ -2.31
MATR3-223	ENST00000514402	PIEZO1	Q92508	2521 aa		0.61	□□□□□ -2.31
MATR3-223	ENST00000514402		A0A087WWC5	75 aa		0.61	□□□□□ -2.31
MATR3-223	ENST00000514402	CCL22	O00626	93 aa		0.61	□□□□□ -2.31
MATR3-223	ENST00000514402	LELP1	Q5T871	98 aa		0.61	□□□□□ -2.31
MATR3-223	ENST00000514402	SPINK6	Q6UWN8	80 aa		0.61	□□□□□ -2.31

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