RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 C9orf116Q5BN46 136 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 DSCAMO60469 2012 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 IGLV2-18A0A075B6J9 118 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 BBC3Q96PG8 261 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 CHD8Q9HCK8 2581 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 LINC00242Q5T6M2 205 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 SSBP3-AS1Q7Z2R9 100 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 KLLNB2CW77 178 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 H3BS24 57 aa6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 TET2Q6N021 2002 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-218ENST00000513024 A0A087WSZ3 146 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 SMIM1B2RUZ4 78 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 FHL2Q14192 279 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 C11orf71Q6IPW1 123 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 DMXL1Q9Y485 3027 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 ASPMQ8IZT6 3477 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 IGLV9-49A0A0B4J1Y8 123 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 RPL37AP8A6NKH3 93 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 H3BPC8 53 aa6.27□□□□□ -1.41
LIMCH1-218ENST00000513024 A0A096LNJ9 63 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 FAM229AH3BQW9 127 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 SPATA3Q8NHX4 192 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 WWC2-AS2Q96NR7 200 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 CDC42SE2Q9NRR3 84 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 ZNF580Q9UK33 172 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 DEFB116Q30KQ4 102 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 DSPP15924 2871 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 Q6ZTC4 211 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 C16orf95Q9H693 158 aa6.26□□□□□ -1.41
LIMCH1-218ENST00000513024 AGRNO00468 2067 aa6.25□□□□□ -1.41
LIMCH1-218ENST00000513024 CYSRT1A8MQ03 144 aa6.24□□□□□ -1.41
LIMCH1-218ENST00000513024 PRR3P79522 188 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-218ENST00000513024 ZNF702PQ9H963 129 aa6.24□□□□□ -1.41
LIMCH1-218ENST00000513024 IGLV5-52A0A0A0MRZ9 124 aa6.24□□□□□ -1.41
LIMCH1-218ENST00000513024 J3QL48 77 aa6.23□□□□□ -1.41
LIMCH1-218ENST00000513024 PLA2G1BP04054 148 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-218ENST00000513024 PRLHP81277 87 aa6.23□□□□□ -1.41
LIMCH1-218ENST00000513024 SMR3AQ99954 134 aa6.23□□□□□ -1.41
LIMCH1-218ENST00000513024 TP53AIP1Q9HCN2 124 aa6.23□□□□□ -1.41
LIMCH1-218ENST00000513024 TM2D3Q9BRN9 247 aa6.22□□□□□ -1.41
LIMCH1-218ENST00000513024 LOC101927531A0A1B0GV80 90 aa6.22□□□□□ -1.41
LIMCH1-218ENST00000513024 KPRPQ5T749 579 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-218ENST00000513024 DCHS1Q96JQ0 3298 aa6.22□□□□□ -1.41
LIMCH1-218ENST00000513024 EGFEM1PQ0D2K5 195 aa6.22□□□□□ -1.41
LIMCH1-218ENST00000513024 FREM2Q5SZK8 3169 aa6.22□□□□□ -1.41
LIMCH1-218ENST00000513024 MRGPRG-AS1Q2M3A8 158 aa6.21□□□□□ -1.41
LIMCH1-218ENST00000513024 UNQ6190/PRO20217Q6UXQ8 127 aa6.21□□□□□ -1.41
LIMCH1-218ENST00000513024 C6orf48Q9UBA6 75 aa6.21□□□□□ -1.41
LIMCH1-218ENST00000513024 COX6A2Q02221 97 aa6.21□□□□□ -1.41
LIMCH1-218ENST00000513024 PCSK5Q92824 1860 aa6.21□□□□□ -1.42
LIMCH1-218ENST00000513024 UQCR11O14957 56 aa6.21□□□□□ -1.42
LIMCH1-218ENST00000513024 C18orf65Q6ZTR6 163 aa6.21□□□□□ -1.42
LIMCH1-218ENST00000513024 C2orf48Q96LS8 159 aa6.21□□□□□ -1.42
LIMCH1-218ENST00000513024 AMELXQ99217 191 aa6.2□□□□□ -1.42
LIMCH1-218ENST00000513024 CEP295Q9C0D2 2601 aa6.2□□□□□ -1.42
LIMCH1-218ENST00000513024 ERC2-IT1O76042 136 aa6.2□□□□□ -1.42
LIMCH1-218ENST00000513024 KRTAP10-9P60411 292 aa6.2□□□□□ -1.42
LIMCH1-218ENST00000513024 LINC00337Q8N6G1 96 aa6.2□□□□□ -1.42
LIMCH1-218ENST00000513024 A0A1B0GW54 56 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 CFAP47Q6ZTR5 3102 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 LINC01600Q96MT4 127 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 IGLV8-61A0A075B6I0 122 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 LELP1Q5T871 98 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 Q9BRP9 147 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 CHCHD7Q9BUK0 85 aa6.18□□□□□ -1.42
LIMCH1-218ENST00000513024 LRRK2Q5S007 2527 aa6.17□□□□□ -1.42
LIMCH1-218ENST00000513024 IGLV4-60A0A075B6I1 120 aa6.17□□□□□ -1.42
LIMCH1-218ENST00000513024 TRAV22A0A0B4J277 110 aa6.17□□□□□ -1.42
LIMCH1-218ENST00000513024 CRIPTQ9P021 101 aa6.17□□□□□ -1.42
LIMCH1-218ENST00000513024 KLKP1Q107X0 134 aa6.17□□□□□ -1.42
LIMCH1-218ENST00000513024 MTORP42345 2549 aa6.17□□□□□ -1.42
LIMCH1-218ENST00000513024 REG3GQ6UW15 175 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 IGLV1-40P01703 118 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 PRR15Q8IV56 129 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 PTPRBP23467 1997 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 LAMA5O15230 3695 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 IGKV2D-30A0A075B6S6 120 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 IGKV2-30P06310 120 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 A8MTW9 85 aa6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 ANKRD11Q6UB99 2663 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-218ENST00000513024 COA5Q86WW8 74 aa6.15□□□□□ -1.42
LIMCH1-218ENST00000513024 RBM12B-AS1Q9P1G2 102 aa6.14□□□□□ -1.43
LIMCH1-218ENST00000513024 ODF3L2Q3SX64 289 aa6.14□□□□□ -1.43
LIMCH1-218ENST00000513024 ELOF1P60002 83 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 MIR22HGQ0VDD5 57 aa6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 CIRBP-AS1Q8TBR5 109 aa6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 COX8CQ7Z4L0 72 aa6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 Q8N2B8 174 aa6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 ZFHX4Q86UP3 3567 aa6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 Q6ZQT0 140 aa6.13□□□□□ -1.43
LIMCH1-218ENST00000513024 LOC110117498A0A087WWA1 95 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 Q6ZSN1 163 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 MGAQ8IWI9 3026 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 C11orf72Q8NBR9 251 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 LOC400499M0QZD8 3231 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 H7BZZ5 65 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 ZNF292O60281 2723 aa6.12□□□□□ -1.43
LIMCH1-218ENST00000513024 LINC01554Q52M75 96 aa6.11□□□□□ -1.43
LIMCH1-218ENST00000513024 IGLV1-51P01701 117 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms