RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 XAGE1AQ9HD64 81 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 CYSRT1A8MQ03 144 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 LYRM9A8MSI8 78 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 CRYGAP11844 174 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 COX17Q14061 63 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 SERP2Q8N6R1 65 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 LINC00167Q96N53 147 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 TENM1Q9UKZ4 2725 aa6.28□□□□□ -1.4
LIMCH1-215ENST00000512632 M0R2N4 97 aa6.28□□□□□ -1.4
LIMCH1-215ENST00000512632 LINC00575Q6W349 94 aa6.28□□□□□ -1.4
LIMCH1-215ENST00000512632 UBL5Q9BZL1 73 aa6.27□□□□□ -1.41
LIMCH1-215ENST00000512632 TEP1Q99973 2627 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-215ENST00000512632 RBM3P98179 157 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-215ENST00000512632 Q6ZQY7 126 aa6.26□□□□□ -1.41
LIMCH1-215ENST00000512632 GHRHP01286 108 aa6.26□□□□□ -1.41
LIMCH1-215ENST00000512632 HAMPP81172 84 aa6.25□□□□□ -1.41
LIMCH1-215ENST00000512632 TRBV10-3A0A0K0K1G6 114 aa6.24□□□□□ -1.41
LIMCH1-215ENST00000512632 C9orf66Q5T8R8 295 aa6.24□□□□□ -1.41
LIMCH1-215ENST00000512632 DSCR8Q96T75 97 aa6.24□□□□□ -1.41
LIMCH1-215ENST00000512632 HIGD2BQ4VC39 106 aa6.24□□□□□ -1.41
LIMCH1-215ENST00000512632 UPK3BQ9BT76 320 aa6.24□□□□□ -1.41
LIMCH1-215ENST00000512632 SPART-AS1P0CW21 52 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 APOC4P55056 127 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 OTOGQ6ZRI0 2925 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 LELP1Q5T871 98 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 Q8NAQ8 132 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 Q6ZQT0 140 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 J3KT08 172 aa6.23□□□□□ -1.41
LIMCH1-215ENST00000512632 C6orf48Q9UBA6 75 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 A0A0J9YWU9 116 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 ZNF561-AS1K7EIQ3 104 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 IGHV4-30-4P0DP06 118 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 FAM19A5Q7Z5A7 132 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 HIVEP1P15822 2718 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 C20orf197Q8N268 126 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 IGLV6-57P01721 117 aa6.22□□□□□ -1.41
LIMCH1-215ENST00000512632 SCXQ7RTU7 201 aa6.21□□□□□ -1.42
LIMCH1-215ENST00000512632 INAFM1C9JVW0 142 aa6.21□□□□□ -1.42
LIMCH1-215ENST00000512632 ATP5EP2Q5VTU8 51 aa6.21□□□□□ -1.42
LIMCH1-215ENST00000512632 MIFP14174 115 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 DIRC1Q969H9 104 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 LYPD5Q6UWN5 251 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 Q6ZVQ6 151 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 PRR34Q9NV39 138 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 TRRAPQ9Y4A5 3859 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 DPH3Q96FX2 82 aa6.2□□□□□ -1.42
LIMCH1-215ENST00000512632 WFDC10BQ8IUB3 73 aa6.19□□□□□ -1.42
LIMCH1-215ENST00000512632 CAMK2N2Q96S95 79 aa6.19□□□□□ -1.42
LIMCH1-215ENST00000512632 PKD1L1Q8TDX9 2849 aa6.19□□□□□ -1.42
LIMCH1-215ENST00000512632 LINC01547P58512 204 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-215ENST00000512632 TMEM258P61165 79 aa6.19□□□□□ -1.42
LIMCH1-215ENST00000512632 ZNF73O43830 326 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-215ENST00000512632 NSD1Q96L73 2696 aaPredicted RBP6.18□□□□□ -1.42
LIMCH1-215ENST00000512632 COX7BP24311 80 aa6.18□□□□□ -1.42
LIMCH1-215ENST00000512632 TRAV10A0A0B4J240 114 aa6.18□□□□□ -1.42
LIMCH1-215ENST00000512632 MUC7Q8TAX7 377 aa6.18□□□□□ -1.42
LIMCH1-215ENST00000512632 RETNQ9HD89 108 aa6.18□□□□□ -1.42
LIMCH1-215ENST00000512632 LOC110117498A0A087WWA1 95 aa6.17□□□□□ -1.42
LIMCH1-215ENST00000512632 J3QKU1 62 aa6.17□□□□□ -1.42
LIMCH1-215ENST00000512632 OXTP01178 125 aa6.17□□□□□ -1.42
LIMCH1-215ENST00000512632 Q6ZRU5 148 aa6.17□□□□□ -1.42
LIMCH1-215ENST00000512632 RPS28P62857 69 aaKnown RBP6.16□□□□□ -1.42
LIMCH1-215ENST00000512632 KPRPQ5T749 579 aaPredicted RBP6.15□□□□□ -1.42
LIMCH1-215ENST00000512632 GVQW2A0A096LPI5 108 aaPredicted RBP6.15□□□□□ -1.42
LIMCH1-215ENST00000512632 F8P00451 2351 aa6.15□□□□□ -1.42
LIMCH1-215ENST00000512632 VPREB1P12018 145 aa6.15□□□□□ -1.43
LIMCH1-215ENST00000512632 SNURFQ9Y675 71 aa6.15□□□□□ -1.43
LIMCH1-215ENST00000512632 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-215ENST00000512632 OXLD1Q5BKU9 147 aa6.14□□□□□ -1.43
LIMCH1-215ENST00000512632 Q6ZTC4 211 aa6.14□□□□□ -1.43
LIMCH1-215ENST00000512632 PDE6GP18545 87 aa6.13□□□□□ -1.43
LIMCH1-215ENST00000512632 ELOF1P60002 83 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-215ENST00000512632 Q8N9L7 120 aa6.13□□□□□ -1.43
LIMCH1-215ENST00000512632 DEFB105AQ8NG35 78 aa6.13□□□□□ -1.43
LIMCH1-215ENST00000512632 IGKV2D-24A0A075B6R9 120 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 TRBV7-4A0A0J9YYF1 115 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 TENM3Q9P273 2699 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 TRAV7A0A075B6U4 112 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 M0R378 163 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 EGFEM1PQ0D2K5 195 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 RMI2Q96E14 147 aa6.12□□□□□ -1.43
LIMCH1-215ENST00000512632 ESRGQ1W209 222 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 Q6ZRP5 223 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 C15orf56Q8N910 161 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 KRTAP26-1Q6PEX3 210 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 MAST4O15021 2626 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 NDUFC2-KCTD14E9PQ53 114 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 C1orf43Q9BWL3 253 aa6.11□□□□□ -1.43
LIMCH1-215ENST00000512632 C4orf26Q17RF5 130 aa6.1□□□□□ -1.43
LIMCH1-215ENST00000512632 TM2D3Q9BRN9 247 aa6.1□□□□□ -1.43
LIMCH1-215ENST00000512632 NOTCH1P46531 2555 aa6.1□□□□□ -1.43
LIMCH1-215ENST00000512632 LINC00528Q8N1L1 170 aa6.1□□□□□ -1.43
LIMCH1-215ENST00000512632 FAM236DA0A1B0GTK5 79 aa6.1□□□□□ -1.43
LIMCH1-215ENST00000512632 FAM236CP0DP71 79 aa6.1□□□□□ -1.43
LIMCH1-215ENST00000512632 C3orf84H3BNL1 204 aa6.09□□□□□ -1.43
LIMCH1-215ENST00000512632 H7BZZ5 65 aa6.09□□□□□ -1.43
LIMCH1-215ENST00000512632 CXCL6P80162 114 aa6.09□□□□□ -1.43
LIMCH1-215ENST00000512632 STAB1Q9NY15 2570 aa6.09□□□□□ -1.44
LIMCH1-215ENST00000512632 FLNBO75369 2602 aaKnown RBP6.09□□□□□ -1.44
LIMCH1-215ENST00000512632 H3BQ85 93 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms