RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TOMM6Q96B49 74 aa2.81□□□□□ -1.96
NUP54-206ENST00000508465 AMELXQ99217 191 aa2.81□□□□□ -1.96
NUP54-206ENST00000508465 TOMM7Q9P0U1 55 aa2.81□□□□□ -1.96
NUP54-206ENST00000508465 TRAPPC1Q9Y5R8 145 aa2.81□□□□□ -1.96
NUP54-206ENST00000508465 DMBT1Q9UGM3 2413 aaPredicted RBP2.8□□□□□ -1.96
NUP54-206ENST00000508465 NDUFA6P56556 154 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 PMCHL1Q16048 86 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 Q6ZRP5 223 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 FA2HQ7L5A8 372 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 PHF5AQ7RTV0 110 aaKnown RBP2.8□□□□□ -1.96
NUP54-206ENST00000508465 LINC00469Q8N7U9 141 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 OR10D4PQ8NGN7 298 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 C7orf33Q8WU49 177 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 C2orf88Q9BSF0 95 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 CST9LQ9H4G1 147 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 GEMIN7Q9H840 131 aaKnown RBP2.8□□□□□ -1.96
NUP54-206ENST00000508465 LINC00474Q9P2X8 69 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 C6orf48Q9UBA6 75 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 CDKN2A-AS1Q9UH64 79 aa2.8□□□□□ -1.96
NUP54-206ENST00000508465 LINC01546A6NGU7 62 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 K7EMI3 77 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 NDUFA1O15239 70 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 LINC00614P0C842 121 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 G0S2P27469 103 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 CKS1BP61024 79 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 KRTAP11-1Q8IUC1 163 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 SVBPQ8N300 66 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 SMCO4Q9NRQ5 59 aa2.79□□□□□ -1.96
NUP54-206ENST00000508465 MRPL35Q9NZE8 188 aaKnown RBP2.79□□□□□ -1.96
NUP54-206ENST00000508465 SNAPINO95295 136 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 OXTP01178 125 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 MT-ND6P03923 174 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 SPINK8P0C7L1 97 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 MT1HL1P0DM35 61 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 RAB5BP61020 215 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 PRR3P79522 188 aaKnown RBP2.78□□□□□ -1.96
NUP54-206ENST00000508465 NDUFA5Q16718 116 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 COX19Q49B96 90 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 ADAMTSL4-AS1Q5T5F5 129 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 FAM19A5Q7Z5A7 132 aaPredicted RBP2.78□□□□□ -1.96
NUP54-206ENST00000508465 CBLN2Q8IUK8 224 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 C18orf32Q8TCD1 76 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 PACRGQ96M98 296 aaPredicted RBP2.78□□□□□ -1.96
NUP54-206ENST00000508465 YPEL4Q96NS1 127 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 TIMM17AQ99595 171 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 PSORS1C2Q9UIG4 136 aa2.78□□□□□ -1.96
NUP54-206ENST00000508465 A0A096LNJ9 63 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 TINCRA0A1B0GVN0 87 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 NDUFV3P56181 108 aaKnown RBP2.77□□□□□ -1.97
NUP54-206ENST00000508465 HERVK_113P63121 156 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 PMVKQ15126 192 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 C9orf129Q5T035 196 aaKnown RBP2.77□□□□□ -1.97
NUP54-206ENST00000508465 FAM19A3Q7Z5A8 133 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 COX7B2Q8TF08 81 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 XAGE1AQ9HD64 81 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 PKIGQ9Y2B9 76 aa2.77□□□□□ -1.97
NUP54-206ENST00000508465 TRBV30A0A0K0K1B3 111 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 NDUFC2-KCTD14E9PQ53 114 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 TLX1NBP0CAT3 122 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 SEC11AP67812 179 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 PDZD11Q5EBL8 140 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 C1orf137Q5JT78 98 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 LCE1CQ5T751 118 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 BAGE3Q86Y29 109 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 Q8IZM0 81 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 FAM19A2Q8N3H0 131 aa2.76□□□□□ -1.97
NUP54-206ENST00000508465 C11orf86A6NJI1 115 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 RPL37AP8A6NKH3 93 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 F8VRH5 84 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 M0QXV9 152 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 NUPR1O60356 82 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 SCO1O75880 301 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 HBDP02042 147 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 TRGC2P03986 189 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 PFN2P35080 140 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 UBE2BP63146 152 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 SPINK6Q6UWN8 80 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 ZNF625Q96I27 306 aaPredicted RBP2.75□□□□□ -1.97
NUP54-206ENST00000508465 OCR1Q9BZK8 76 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 PPDPFQ9H3Y8 114 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 PRO0461Q9UI25 63 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 C22orf24Q9Y442 160 aa2.75□□□□□ -1.97
NUP54-206ENST00000508465 LINC01549A6NIU2 74 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 COLCA2A8K830 154 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 E9PLD3 99 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 H3BRM9 83 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 IGLV7-43P04211 117 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 IGLC3P0DOY3 106 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 ZNF22P17026 224 aaPredicted RBP2.74□□□□□ -1.97
NUP54-206ENST00000508465 TMEM170BQ5T4T1 132 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 IFI27L1Q96BM0 104 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 LINC01600Q96MT4 127 aa2.74□□□□□ -1.97
NUP54-206ENST00000508465 TNXBP22105 4242 aa2.73□□□□□ -1.97
NUP54-206ENST00000508465 SERF1AO75920 110 aa2.73□□□□□ -1.97
NUP54-206ENST00000508465 FABP4P15090 132 aa2.73□□□□□ -1.97
NUP54-206ENST00000508465 REG3GQ6UW15 175 aa2.73□□□□□ -1.97
NUP54-206ENST00000508465 CHCHD1Q96BP2 118 aaKnown RBP2.73□□□□□ -1.97
NUP54-206ENST00000508465 LINC00167Q96N53 147 aa2.73□□□□□ -1.97
NUP54-206ENST00000508465 HMCN2Q8NDA2 5059 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms