RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 NDUFA12Q9UI09 145 aa12.12□□□□□ -0.47
SQSTM1-210ENST00000506042 ZNF22P17026 224 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-210ENST00000506042 LINC00158P58513 81 aa12.11□□□□□ -0.47
SQSTM1-210ENST00000506042 ZNF625Q96I27 306 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-210ENST00000506042 SEC11CQ9BY50 192 aa12.11□□□□□ -0.47
SQSTM1-210ENST00000506042 HBDP02042 147 aa12.1□□□□□ -0.47
SQSTM1-210ENST00000506042 CLLU1Q5K131 121 aa12.1□□□□□ -0.47
SQSTM1-210ENST00000506042 TMEM218A2RU14 115 aa12.07□□□□□ -0.48
SQSTM1-210ENST00000506042 LINC00587B1AMM8 73 aa12.07□□□□□ -0.48
SQSTM1-210ENST00000506042 LINC00614P0C842 121 aa12.07□□□□□ -0.48
SQSTM1-210ENST00000506042 C3orf22Q8N5N4 141 aa12.07□□□□□ -0.48
SQSTM1-210ENST00000506042 SPRR4Q96PI1 79 aa12.07□□□□□ -0.48
SQSTM1-210ENST00000506042 PRYO14603 147 aa12.06□□□□□ -0.48
SQSTM1-210ENST00000506042 SPINK1P00995 79 aa12.06□□□□□ -0.48
SQSTM1-210ENST00000506042 BAGE3Q86Y29 109 aa12.06□□□□□ -0.48
SQSTM1-210ENST00000506042 FAM19A2Q8N3H0 131 aa12.06□□□□□ -0.48
SQSTM1-210ENST00000506042 ETDCA0A1B0GVM5 59 aa12.04□□□□□ -0.48
SQSTM1-210ENST00000506042 LINC01547P58512 204 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-210ENST00000506042 SEC61BP60468 96 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-210ENST00000506042 RHEBQ15382 184 aa12.02□□□□□ -0.49
SQSTM1-210ENST00000506042 C11orf86A6NJI1 115 aa12.01□□□□□ -0.49
SQSTM1-210ENST00000506042 MEIG1Q5JSS6 88 aa12.01□□□□□ -0.49
SQSTM1-210ENST00000506042 Q8NBF4 154 aa12.01□□□□□ -0.49
SQSTM1-210ENST00000506042 MAP1LC3CQ9BXW4 147 aa12.01□□□□□ -0.49
SQSTM1-210ENST00000506042 CHTOPQ9Y3Y2 248 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-210ENST00000506042 KRTAP9-6A0A140TA67 174 aa12□□□□□ -0.49
SQSTM1-210ENST00000506042 HERV-K104P63124 156 aa12□□□□□ -0.49
SQSTM1-210ENST00000506042 BOD1L2Q8IYS8 172 aa12□□□□□ -0.49
SQSTM1-210ENST00000506042 TRAPPC1Q9Y5R8 145 aa12□□□□□ -0.49
SQSTM1-210ENST00000506042 DAND5Q8N907 189 aa11.99□□□□□ -0.49
SQSTM1-210ENST00000506042 C18orf32Q8TCD1 76 aa11.98□□□□□ -0.49
SQSTM1-210ENST00000506042 RPS10P5Q9NQ39 176 aa11.98□□□□□ -0.49
SQSTM1-210ENST00000506042 A0A0U1RRA0 63 aa11.97□□□□□ -0.49
SQSTM1-210ENST00000506042 ASB16-AS1Q495Z4 193 aa11.96□□□□□ -0.49
SQSTM1-210ENST00000506042 A0A096LNJ9 63 aa11.95□□□□□ -0.5
SQSTM1-210ENST00000506042 RPS29P62273 56 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-210ENST00000506042 SMCR5Q8TEV8 140 aa11.95□□□□□ -0.5
SQSTM1-210ENST00000506042 KCNQ1DNQ9H478 68 aa11.95□□□□□ -0.5
SQSTM1-210ENST00000506042 NCR3O14931 201 aa11.93□□□□□ -0.5
SQSTM1-210ENST00000506042 PMCHL1Q16048 86 aa11.93□□□□□ -0.5
SQSTM1-210ENST00000506042 KRTAP13-3Q3SY46 172 aa11.93□□□□□ -0.5
SQSTM1-210ENST00000506042 Q8NDZ9 215 aa11.93□□□□□ -0.5
SQSTM1-210ENST00000506042 TRAV12-1A0A0B4J245 112 aa11.92□□□□□ -0.5
SQSTM1-210ENST00000506042 TMEM223A0PJW6 202 aa11.92□□□□□ -0.5
SQSTM1-210ENST00000506042 SMIM13P0DJ93 91 aa11.92□□□□□ -0.5
SQSTM1-210ENST00000506042 SSBP3-AS1Q7Z2R9 100 aa11.92□□□□□ -0.5
SQSTM1-210ENST00000506042 MYMXA0A1B0GTQ4 84 aa11.91□□□□□ -0.5
SQSTM1-210ENST00000506042 SPRR1AP35321 89 aa11.91□□□□□ -0.5
SQSTM1-210ENST00000506042 MIR7-3HGQ8N6C7 128 aa11.91□□□□□ -0.5
SQSTM1-210ENST00000506042 SLC25A20O43772 301 aa11.9□□□□□ -0.5
SQSTM1-210ENST00000506042 GAGE2AQ6NT46 116 aa11.9□□□□□ -0.5
SQSTM1-210ENST00000506042 MIEN1Q9BRT3 115 aa11.9□□□□□ -0.5
SQSTM1-210ENST00000506042 LINC00483Q53H64 154 aa11.89□□□□□ -0.51
SQSTM1-210ENST00000506042 IFI27L1Q96BM0 104 aa11.89□□□□□ -0.51
SQSTM1-210ENST00000506042 CHCHD1Q96BP2 118 aaKnown RBP11.89□□□□□ -0.51
SQSTM1-210ENST00000506042 IFITM2Q01629 132 aa11.88□□□□□ -0.51
SQSTM1-210ENST00000506042 JOSD1Q15040 202 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-210ENST00000506042 IGLV9-49A0A0B4J1Y8 123 aa11.87□□□□□ -0.51
SQSTM1-210ENST00000506042 TRBV10-3A0A0K0K1G6 114 aa11.87□□□□□ -0.51
SQSTM1-210ENST00000506042 MOBPQ13875 183 aa11.87□□□□□ -0.51
SQSTM1-210ENST00000506042 COMMD7Q86VX2 200 aa11.87□□□□□ -0.51
SQSTM1-210ENST00000506042 URB1-AS1Q96HZ7 61 aa11.87□□□□□ -0.51
SQSTM1-210ENST00000506042 CBY1Q9Y3M2 126 aa11.86□□□□□ -0.51
SQSTM1-210ENST00000506042 NDUFA5Q16718 116 aa11.85□□□□□ -0.51
SQSTM1-210ENST00000506042 FAT4Q6V0I7 4981 aa11.85□□□□□ -0.51
SQSTM1-210ENST00000506042 TRBV10-2A0A0K0K1G8 114 aa11.84□□□□□ -0.51
SQSTM1-210ENST00000506042 DDTP30046 118 aa11.84□□□□□ -0.51
SQSTM1-210ENST00000506042 S100A7L2Q5SY68 101 aa11.83□□□□□ -0.52
SQSTM1-210ENST00000506042 C10orf91Q5T1B1 145 aa11.83□□□□□ -0.52
SQSTM1-210ENST00000506042 KRTAP4-16G5E9R7 235 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-210ENST00000506042 B5MCH6 92 aa11.81□□□□□ -0.52
SQSTM1-210ENST00000506042 HSBP1O75506 76 aa11.81□□□□□ -0.52
SQSTM1-210ENST00000506042 SPANXB1Q9NS25 103 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-210ENST00000506042 SNAPINO95295 136 aa11.8□□□□□ -0.52
SQSTM1-210ENST00000506042 HINT1P49773 126 aaPredicted RBP11.8□□□□□ -0.52
SQSTM1-210ENST00000506042 C9orf153Q5TBE3 101 aa11.8□□□□□ -0.52
SQSTM1-210ENST00000506042 Q6ZRX8 168 aa11.8□□□□□ -0.52
SQSTM1-210ENST00000506042 Q8N377 158 aa11.8□□□□□ -0.52
SQSTM1-210ENST00000506042 HERVK_113P61574 105 aa11.79□□□□□ -0.52
SQSTM1-210ENST00000506042 SLC25A34Q6PIV7 304 aa11.77□□□□□ -0.53
SQSTM1-210ENST00000506042 SVBPQ8N300 66 aa11.77□□□□□ -0.53
SQSTM1-210ENST00000506042 MUC17Q685J3 4493 aa11.76□□□□□ -0.53
SQSTM1-210ENST00000506042 PLNP26678 52 aa11.76□□□□□ -0.53
SQSTM1-210ENST00000506042 NMUP48645 174 aa11.76□□□□□ -0.53
SQSTM1-210ENST00000506042 LIMD2Q9BT23 127 aa11.76□□□□□ -0.53
SQSTM1-210ENST00000506042 LOC107984156A0A0G2JMH3 177 aa11.75□□□□□ -0.53
SQSTM1-210ENST00000506042 C5orf52A6NGY3 159 aa11.75□□□□□ -0.53
SQSTM1-210ENST00000506042 ARL17AQ8IVW1 177 aa11.75□□□□□ -0.53
SQSTM1-210ENST00000506042 H0Y8G0 127 aa11.74□□□□□ -0.53
SQSTM1-210ENST00000506042 LEPROTO15243 131 aa11.74□□□□□ -0.53
SQSTM1-210ENST00000506042 NDUFC2O95298 119 aa11.74□□□□□ -0.53
SQSTM1-210ENST00000506042 APOC3P02656 99 aa11.74□□□□□ -0.53
SQSTM1-210ENST00000506042 LGALS3P17931 250 aaKnown RBP11.73□□□□□ -0.53
SQSTM1-210ENST00000506042 XP32Q5T750 250 aa11.73□□□□□ -0.53
SQSTM1-210ENST00000506042 TRAV23DV6A0A075B6W5 121 aa11.72□□□□□ -0.53
SQSTM1-210ENST00000506042 J3QQQ9 107 aa11.7□□□□□ -0.54
SQSTM1-210ENST00000506042 ERC2-IT1O76042 136 aa11.7□□□□□ -0.54
SQSTM1-210ENST00000506042 LEPROTL1O95214 131 aa11.7□□□□□ -0.54
SQSTM1-210ENST00000506042 LCE2DQ5TA82 110 aaPredicted RBP11.7□□□□□ -0.54
SQSTM1-210ENST00000506042 Q9BRP9 147 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms