RNA–Protein interactions for RNA: ENST00000504994.1

HERC3-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 5

Gene HERC3, Length 341 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-209ENST00000504994 K7EQZ3 153 aa0.81□□□□□ -2.28
HERC3-209ENST00000504994 COX8AP10176 69 aa0.81□□□□□ -2.28
HERC3-209ENST00000504994 RPL38P63173 70 aaKnown RBP0.81□□□□□ -2.28
HERC3-209ENST00000504994 CCDC88BA6NC98 1476 aa0.8□□□□□ -2.28
HERC3-209ENST00000504994 NKTRP30414 1462 aaKnown RBP0.8□□□□□ -2.28
HERC3-209ENST00000504994 CCDC141Q6ZP82 1450 aa0.8□□□□□ -2.28
HERC3-209ENST00000504994 USF3Q68DE3 2245 aa0.8□□□□□ -2.28
HERC3-209ENST00000504994 CFAP74Q9C0B2 1584 aa0.8□□□□□ -2.28
HERC3-209ENST00000504994 COX6B1P14854 86 aa0.8□□□□□ -2.28
HERC3-209ENST00000504994 CPSF4LA6NMK7 179 aaKnown RBP0.79□□□□□ -2.28
HERC3-209ENST00000504994 NREPQ16612 68 aa0.79□□□□□ -2.28
HERC3-209ENST00000504994 LRRC7Q96NW7 1537 aa0.79□□□□□ -2.28
HERC3-209ENST00000504994 DUOX2Q9NRD8 1548 aa0.79□□□□□ -2.28
HERC3-209ENST00000504994 UGGT2Q9NYU1 1516 aa0.79□□□□□ -2.28
HERC3-209ENST00000504994 KIF20BQ96Q89 1820 aa0.78□□□□□ -2.28
HERC3-209ENST00000504994 BDP1A6H8Y1 2624 aa0.78□□□□□ -2.28
HERC3-209ENST00000504994 TMEM131LA2VDJ0 1609 aa0.78□□□□□ -2.29
HERC3-209ENST00000504994 KIAA0556O60303 1618 aa0.78□□□□□ -2.29
HERC3-209ENST00000504994 HMGA1P17096 107 aaKnown RBP0.77□□□□□ -2.29
HERC3-209ENST00000504994 HILPDAQ9Y5L2 63 aa0.77□□□□□ -2.29
HERC3-209ENST00000504994 F8P00451 2351 aa0.77□□□□□ -2.29
HERC3-209ENST00000504994 POLQO75417 2590 aa0.77□□□□□ -2.29
HERC3-209ENST00000504994 ABCA12Q86UK0 2595 aa0.77□□□□□ -2.29
HERC3-209ENST00000504994 C2CD3Q4AC94 2353 aa0.76□□□□□ -2.29
HERC3-209ENST00000504994 PKD1L3Q7Z443 1732 aa0.76□□□□□ -2.29
HERC3-209ENST00000504994 PTPN23Q9H3S7 1636 aa0.76□□□□□ -2.29
HERC3-209ENST00000504994 SPRR1BP22528 89 aa0.76□□□□□ -2.29
HERC3-209ENST00000504994 SPRR1AP35321 89 aa0.76□□□□□ -2.29
HERC3-209ENST00000504994 DOPEY2Q9Y3R5 2298 aa0.76□□□□□ -2.29
HERC3-209ENST00000504994 TSC2P49815 1807 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 FMN2Q9NZ56 1722 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 ABCA8O94911 1581 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 CACNA1EQ15878 2313 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 Q5VSD8 79 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 MRPL34Q9BQ48 92 aaKnown RBP0.75□□□□□ -2.29
HERC3-209ENST00000504994 GNG13Q9P2W3 67 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 APLNQ9ULZ1 77 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 ALKQ9UM73 1620 aa0.75□□□□□ -2.29
HERC3-209ENST00000504994 CLIP1P30622 1438 aa0.74□□□□□ -2.29
HERC3-209ENST00000504994 TPRP12270 2363 aaKnown RBP0.74□□□□□ -2.29
HERC3-209ENST00000504994 LCE6AA0A183 80 aa0.74□□□□□ -2.29
HERC3-209ENST00000504994 ATXN8Q156A1 80 aa0.74□□□□□ -2.29
HERC3-209ENST00000504994 KRTAP5-10Q6L8G5 202 aa0.74□□□□□ -2.29
HERC3-209ENST00000504994 USP32Q8NFA0 1604 aa0.74□□□□□ -2.29
HERC3-209ENST00000504994 LRRC37AA6NMS7 1700 aa0.73□□□□□ -2.29
HERC3-209ENST00000504994 PPRC1Q5VV67 1664 aaKnown RBP0.73□□□□□ -2.29
HERC3-209ENST00000504994 NDUFA4O00483 81 aa0.73□□□□□ -2.29
HERC3-209ENST00000504994 CCL22O00626 93 aa0.73□□□□□ -2.29
HERC3-209ENST00000504994 FXYD6Q9H0Q3 95 aa0.73□□□□□ -2.29
HERC3-209ENST00000504994 URB1O60287 2271 aaKnown RBP0.73□□□□□ -2.29
HERC3-209ENST00000504994 DNMBPQ6XZF7 1577 aa0.73□□□□□ -2.29
HERC3-209ENST00000504994 RGPD2P0DJD1 1756 aa0.73□□□□□ -2.29
HERC3-209ENST00000504994 PIK3C2BO00750 1634 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 UBR3Q6ZT12 1888 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 CEP170BQ9Y4F5 1589 aaPredicted RBP0.72□□□□□ -2.29
HERC3-209ENST00000504994 SPINK1P00995 79 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 SPTBN2O15020 2390 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 CD163L1Q9NR16 1453 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 RGPD1P0DJD0 1748 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 ANKRD50Q9ULJ7 1429 aa0.72□□□□□ -2.29
HERC3-209ENST00000504994 A0A087WWC5 75 aa0.71□□□□□ -2.3
HERC3-209ENST00000504994 DEFB105AQ8NG35 78 aa0.71□□□□□ -2.3
HERC3-209ENST00000504994 CHD9Q3L8U1 2897 aa0.71□□□□□ -2.3
HERC3-209ENST00000504994 LRRIQ1Q96JM4 1722 aa0.7□□□□□ -2.3
HERC3-209ENST00000504994 SPINK4O60575 86 aa0.7□□□□□ -2.3
HERC3-209ENST00000504994 ENHOQ6UWT2 76 aa0.7□□□□□ -2.3
HERC3-209ENST00000504994 S100ZQ8WXG8 99 aa0.7□□□□□ -2.3
HERC3-209ENST00000504994 CDKN2A-AS1Q9UH64 79 aa0.7□□□□□ -2.3
HERC3-209ENST00000504994 MUC5BQ9HC84 5762 aaPredicted RBP0.7□□□□□ -2.3
HERC3-209ENST00000504994 RGPD8O14715 1765 aaPredicted RBP0.7□□□□□ -2.3
HERC3-209ENST00000504994 RGPD5Q99666 1765 aa0.7□□□□□ -2.3
HERC3-209ENST00000504994 IQGAP3Q86VI3 1631 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 KLK9Q2XQG4 91 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 DEFB109BQ30KR1 87 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 H1FX-AS1Q4G0G2 97 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 COX6B2Q6YFQ2 88 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 ANK2Q01484 3957 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 PIEZO2Q9H5I5 2752 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 ZNF292O60281 2723 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 MYO5CQ9NQX4 1742 aa0.69□□□□□ -2.3
HERC3-209ENST00000504994 COL14A1Q05707 1796 aaKnown RBP0.68□□□□□ -2.3
HERC3-209ENST00000504994 NDUFA3O95167 84 aa0.68□□□□□ -2.3
HERC3-209ENST00000504994 C3orf79P0CE67 100 aa0.68□□□□□ -2.3
HERC3-209ENST00000504994 ZNF831Q5JPB2 1677 aa0.68□□□□□ -2.3
HERC3-209ENST00000504994 ERICH3Q5RHP9 1530 aa0.68□□□□□ -2.3
HERC3-209ENST00000504994 MAGI3Q5TCQ9 1506 aa0.68□□□□□ -2.3
HERC3-209ENST00000504994 ASXL1Q8IXJ9 1541 aa0.68□□□□□ -2.3
HERC3-209ENST00000504994 DIP2AQ14689 1571 aa0.67□□□□□ -2.3
HERC3-209ENST00000504994 SCN11AQ9UI33 1791 aa0.67□□□□□ -2.3
HERC3-209ENST00000504994 ADAMTS12P58397 1594 aa0.66□□□□□ -2.3
HERC3-209ENST00000504994 HFM1A2PYH4 1435 aa0.66□□□□□ -2.3
HERC3-209ENST00000504994 LMTK2Q8IWU2 1503 aa0.66□□□□□ -2.3
HERC3-209ENST00000504994 LELP1Q5T871 98 aa0.66□□□□□ -2.3
HERC3-209ENST00000504994 UBL5Q9BZL1 73 aa0.66□□□□□ -2.3
HERC3-209ENST00000504994 LTN1O94822 1766 aa0.65□□□□□ -2.3
HERC3-209ENST00000504994 PTPRQQ9UMZ3 2332 aa0.65□□□□□ -2.31
HERC3-209ENST00000504994 EFCAB5A4FU69 1503 aa0.64□□□□□ -2.31
HERC3-209ENST00000504994 QSER1Q2KHR3 1735 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms