RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 IGLV5-39A0A0G2JS06 123 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 LINC00336Q6ZUF6 198 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 LINC00476Q8WZB0 136 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 FAM104AQ969W3 186 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 H1FX-AS1Q4G0G2 97 aa4.11□□□□□ -1.75
USF3-204ENST00000496826 LRP4O75096 1905 aa4.11□□□□□ -1.75
USF3-204ENST00000496826 K7EQZ3 153 aa4.11□□□□□ -1.75
USF3-204ENST00000496826 POLR2KP53803 58 aaKnown RBP4.1□□□□□ -1.75
USF3-204ENST00000496826 A0A087WYN8 130 aa4.09□□□□□ -1.75
USF3-204ENST00000496826 C22orf24Q9Y442 160 aa4.09□□□□□ -1.75
USF3-204ENST00000496826 PKD1L2Q7Z442 2459 aa4.09□□□□□ -1.76
USF3-204ENST00000496826 ANKHD1Q8IWZ3 2542 aaKnown RBP4.09□□□□□ -1.76
USF3-204ENST00000496826 UNQ6190/PRO20217Q6UXQ8 127 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 Q6ZSA8 131 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.08□□□□□ -1.76
USF3-204ENST00000496826 MGAMO43451 1857 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 SPINK7P58062 85 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 ZNF580Q9UK33 172 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 NHSQ6T4R5 1651 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 CEMP1Q6PRD7 247 aaPredicted RBP4.08□□□□□ -1.76
USF3-204ENST00000496826 ADAMTS20P59510 1910 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 Q6ZRX8 168 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 Q6ZSV7 163 aa4.08□□□□□ -1.76
USF3-204ENST00000496826 ARID2Q68CP9 1835 aa4.07□□□□□ -1.76
USF3-204ENST00000496826 CSAG1Q6PB30 78 aa4.07□□□□□ -1.76
USF3-204ENST00000496826 NHSL1Q5SYE7 1610 aa4.07□□□□□ -1.76
USF3-204ENST00000496826 KRTAP16-1A8MUX0 517 aa4.07□□□□□ -1.76
USF3-204ENST00000496826 KLLNB2CW77 178 aa4.07□□□□□ -1.76
USF3-204ENST00000496826 LINC01006Q8NI28 216 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 WWC2-AS2Q96NR7 200 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 INAFM1C9JVW0 142 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 ASB16-AS1Q495Z4 193 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 TTTY13Q9BZ97 58 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 NCOR2Q9Y618 2525 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 IGLV1-47P01700 117 aa4.06□□□□□ -1.76
USF3-204ENST00000496826 A0A1W2PNM2 257 aa4.05□□□□□ -1.76
USF3-204ENST00000496826 CNFNQ9BYD5 112 aa4.05□□□□□ -1.76
USF3-204ENST00000496826 COX8CQ7Z4L0 72 aa4.05□□□□□ -1.76
USF3-204ENST00000496826 ST20-AS1Q8NBB2 130 aa4.05□□□□□ -1.76
USF3-204ENST00000496826 ZNF575Q86XF7 245 aa4.05□□□□□ -1.76
USF3-204ENST00000496826 IGFL2Q6UWQ7 119 aa4.04□□□□□ -1.76
USF3-204ENST00000496826 LINC00574Q9H8X3 128 aa4.04□□□□□ -1.76
USF3-204ENST00000496826 A0A1B0GVX0 72 aa4.04□□□□□ -1.76
USF3-204ENST00000496826 PROK1P58294 105 aa4.04□□□□□ -1.76
USF3-204ENST00000496826 PRR34Q9NV39 138 aa4.04□□□□□ -1.76
USF3-204ENST00000496826 PLA2G5P39877 138 aa4.04□□□□□ -1.76
USF3-204ENST00000496826 A0A1B0GU33 70 aa4.03□□□□□ -1.76
USF3-204ENST00000496826 GRNP28799 593 aaKnown RBP4.03□□□□□ -1.76
USF3-204ENST00000496826 C16orf95Q9H693 158 aa4.03□□□□□ -1.76
USF3-204ENST00000496826 ZFYVE26Q68DK2 2539 aa4.03□□□□□ -1.76
USF3-204ENST00000496826 Q6ZSN1 163 aa4.03□□□□□ -1.76
USF3-204ENST00000496826 BRI3O95415 125 aa4.03□□□□□ -1.76
USF3-204ENST00000496826 FHL3Q13643 280 aa4.02□□□□□ -1.77
USF3-204ENST00000496826 IGLV1-50A0A075B6I6 118 aa4.02□□□□□ -1.77
USF3-204ENST00000496826 Q8NAQ8 132 aa4.02□□□□□ -1.77
USF3-204ENST00000496826 MUC6Q6W4X9 2439 aa4.01□□□□□ -1.77
USF3-204ENST00000496826 RAI1Q7Z5J4 1906 aaPredicted RBP4.01□□□□□ -1.77
USF3-204ENST00000496826 A0A0D9SG42 100 aa4.01□□□□□ -1.77
USF3-204ENST00000496826 TSPEAR-AS2P59090 65 aa4.01□□□□□ -1.77
USF3-204ENST00000496826 IGLV1-51P01701 117 aa4□□□□□ -1.77
USF3-204ENST00000496826 KLKP1Q107X0 134 aa4□□□□□ -1.77
USF3-204ENST00000496826 TP53TG3Q9ULZ0 132 aa4□□□□□ -1.77
USF3-204ENST00000496826 NBDYA0A0U1RRE5 68 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 IGIPA6NJ69 53 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 LITAFQ99732 161 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 R4GN34 69 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 LINC00528Q8N1L1 170 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 LINC01546A6NGU7 62 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 P0C880 135 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 ROMO1P60602 79 aa3.99□□□□□ -1.77
USF3-204ENST00000496826 GVQW2A0A096LPI5 108 aaPredicted RBP3.98□□□□□ -1.77
USF3-204ENST00000496826 FAM229BQ4G0N7 80 aa3.98□□□□□ -1.77
USF3-204ENST00000496826 Q6ZRU5 148 aa3.98□□□□□ -1.77
USF3-204ENST00000496826 C10orf142B7Z368 130 aa3.98□□□□□ -1.77
USF3-204ENST00000496826 COL24A1Q17RW2 1714 aa3.98□□□□□ -1.77
USF3-204ENST00000496826 TLN1Q9Y490 2541 aaKnown RBP3.98□□□□□ -1.77
USF3-204ENST00000496826 TLN2Q9Y4G6 2542 aa3.98□□□□□ -1.77
USF3-204ENST00000496826 A0A1W2PNN7 141 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 KIAA1549LQ6ZVL6 1849 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 COL5A3P25940 1745 aaPredicted RBP3.97□□□□□ -1.77
USF3-204ENST00000496826 Q8NA96 180 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 ZNF861PO60384 105 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 C15orf56Q8N910 161 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 FLVCR1-AS1Q8TAF5 88 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 MAPKAPK5-AS1Q8N8E1 139 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 MTORP42345 2549 aa3.97□□□□□ -1.77
USF3-204ENST00000496826 COL5A1P20908 1838 aaPredicted RBP3.97□□□□□ -1.77
USF3-204ENST00000496826 LMO4P61968 165 aa3.96□□□□□ -1.78
USF3-204ENST00000496826 USP9XQ93008 2570 aaPredicted RBP3.96□□□□□ -1.78
USF3-204ENST00000496826 OCR1Q9BZK8 76 aa3.96□□□□□ -1.78
USF3-204ENST00000496826 S4R3F8 94 aa3.96□□□□□ -1.78
USF3-204ENST00000496826 IGLV1-40P01703 118 aa3.96□□□□□ -1.78
USF3-204ENST00000496826 ODF3L2Q3SX64 289 aa3.95□□□□□ -1.78
USF3-204ENST00000496826 ZCCHC13Q8WW36 166 aaKnown RBP3.95□□□□□ -1.78
USF3-204ENST00000496826 TNS1Q9HBL0 1735 aaKnown RBP3.94□□□□□ -1.78
USF3-204ENST00000496826 Q6ZPA2 131 aa3.94□□□□□ -1.78
USF3-204ENST00000496826 C18orf65Q6ZTR6 163 aa3.94□□□□□ -1.78
USF3-204ENST00000496826 POLQO75417 2590 aa3.94□□□□□ -1.78
USF3-204ENST00000496826 PROK2Q9HC23 129 aa3.94□□□□□ -1.78
USF3-204ENST00000496826 SIP14410 1827 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms