RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 C10orf25Q5T742 122 aa6.52□□□□□ -1.37
SYNE1-230ENST00000495090 UNQ6190/PRO20217Q6UXQ8 127 aa6.52□□□□□ -1.37
SYNE1-230ENST00000495090 IGLV10-54A0A075B6I4 117 aa6.52□□□□□ -1.37
SYNE1-230ENST00000495090 CYSRT1A8MQ03 144 aa6.52□□□□□ -1.37
SYNE1-230ENST00000495090 ZNF73O43830 326 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-230ENST00000495090 DEFB113Q30KQ7 82 aa6.51□□□□□ -1.37
SYNE1-230ENST00000495090 X6R8D5 127 aa6.51□□□□□ -1.37
SYNE1-230ENST00000495090 CELA1Q9UNI1 258 aa6.5□□□□□ -1.37
SYNE1-230ENST00000495090 A0A096LPF7 62 aa6.5□□□□□ -1.37
SYNE1-230ENST00000495090 MAP1AP78559 2803 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-230ENST00000495090 A0A0U1RQV1 116 aa6.49□□□□□ -1.37
SYNE1-230ENST00000495090 OCR1Q9BZK8 76 aa6.49□□□□□ -1.37
SYNE1-230ENST00000495090 PRR34Q9NV39 138 aa6.49□□□□□ -1.37
SYNE1-230ENST00000495090 USP9YO00507 2555 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-230ENST00000495090 ITPR1Q14643 2758 aa6.49□□□□□ -1.37
SYNE1-230ENST00000495090 PRYO14603 147 aa6.48□□□□□ -1.37
SYNE1-230ENST00000495090 IGKV4-1P06312 121 aa6.48□□□□□ -1.37
SYNE1-230ENST00000495090 SCXQ7RTU7 201 aa6.48□□□□□ -1.37
SYNE1-230ENST00000495090 ZANQ9Y493 2812 aa6.48□□□□□ -1.37
SYNE1-230ENST00000495090 ANKRD17O75179 2603 aaKnown RBP6.48□□□□□ -1.37
SYNE1-230ENST00000495090 ESM1Q9NQ30 184 aa6.48□□□□□ -1.37
SYNE1-230ENST00000495090 LINC00474Q9P2X8 69 aa6.48□□□□□ -1.37
SYNE1-230ENST00000495090 MYO9AB2RTY4 2548 aa6.47□□□□□ -1.37
SYNE1-230ENST00000495090 CHD6Q8TD26 2715 aa6.47□□□□□ -1.37
SYNE1-230ENST00000495090 LELP1Q5T871 98 aa6.47□□□□□ -1.37
SYNE1-230ENST00000495090 C6orf48Q9UBA6 75 aa6.47□□□□□ -1.37
SYNE1-230ENST00000495090 NCOR2Q9Y618 2525 aa6.47□□□□□ -1.37
SYNE1-230ENST00000495090 CSMD2Q7Z408 3487 aa6.46□□□□□ -1.37
SYNE1-230ENST00000495090 A0A1B0GW54 56 aa6.46□□□□□ -1.38
SYNE1-230ENST00000495090 VPREB1P12018 145 aa6.46□□□□□ -1.38
SYNE1-230ENST00000495090 C1orf195Q5TG92 126 aa6.46□□□□□ -1.38
SYNE1-230ENST00000495090 KRTAP1-3Q8IUG1 177 aa6.46□□□□□ -1.38
SYNE1-230ENST00000495090 LINC00528Q8N1L1 170 aa6.46□□□□□ -1.38
SYNE1-230ENST00000495090 WFDC11Q8NEX6 87 aa6.46□□□□□ -1.38
SYNE1-230ENST00000495090 AKAP9Q99996 3911 aa6.45□□□□□ -1.38
SYNE1-230ENST00000495090 M0R378 163 aa6.45□□□□□ -1.38
SYNE1-230ENST00000495090 ESRGQ1W209 222 aa6.45□□□□□ -1.38
SYNE1-230ENST00000495090 WNK1Q9H4A3 2382 aa6.45□□□□□ -1.38
SYNE1-230ENST00000495090 FUSP35637 526 aaKnown RBP eCLIP6.44□□□□□ -1.38
SYNE1-230ENST00000495090 USP9XQ93008 2570 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-230ENST00000495090 SETXQ7Z333 2677 aaKnown RBP6.44□□□□□ -1.38
SYNE1-230ENST00000495090 TLN2Q9Y4G6 2542 aa6.44□□□□□ -1.38
SYNE1-230ENST00000495090 NBPF19A0A087WUL8 3843 aa6.44□□□□□ -1.38
SYNE1-230ENST00000495090 Q6ZTC4 211 aa6.44□□□□□ -1.38
SYNE1-230ENST00000495090 XAGE1AQ9HD64 81 aa6.44□□□□□ -1.38
SYNE1-230ENST00000495090 FBN2P35556 2912 aa6.44□□□□□ -1.38
SYNE1-230ENST00000495090 CACNA1AO00555 2505 aa6.43□□□□□ -1.38
SYNE1-230ENST00000495090 LCE6AA0A183 80 aa6.43□□□□□ -1.38
SYNE1-230ENST00000495090 KRTAP10-9P60411 292 aa6.43□□□□□ -1.38
SYNE1-230ENST00000495090 EGFEM1PQ0D2K5 195 aa6.43□□□□□ -1.38
SYNE1-230ENST00000495090 CHD8Q9HCK8 2581 aa6.43□□□□□ -1.38
SYNE1-230ENST00000495090 DAD1P61803 113 aa6.42□□□□□ -1.38
SYNE1-230ENST00000495090 FAM229BQ4G0N7 80 aa6.42□□□□□ -1.38
SYNE1-230ENST00000495090 HIGD2BQ4VC39 106 aa6.42□□□□□ -1.38
SYNE1-230ENST00000495090 BRK1Q8WUW1 75 aa6.42□□□□□ -1.38
SYNE1-230ENST00000495090 LCE2BO14633 110 aa6.42□□□□□ -1.38
SYNE1-230ENST00000495090 KLK12Q9UKR0 248 aa6.41□□□□□ -1.38
SYNE1-230ENST00000495090 PKIGQ9Y2B9 76 aa6.41□□□□□ -1.38
SYNE1-230ENST00000495090 JMJD1CQ15652 2540 aa6.41□□□□□ -1.38
SYNE1-230ENST00000495090 IGLV5-48A0A075B6I7 105 aa6.4□□□□□ -1.38
SYNE1-230ENST00000495090 Q8N9L7 120 aa6.4□□□□□ -1.38
SYNE1-230ENST00000495090 CAMK2N2Q96S95 79 aa6.39□□□□□ -1.39
SYNE1-230ENST00000495090 TEX15Q9BXT5 2789 aa6.39□□□□□ -1.39
SYNE1-230ENST00000495090 CFAP46Q8IYW2 2715 aa6.39□□□□□ -1.39
SYNE1-230ENST00000495090 FLNCQ14315 2725 aa6.39□□□□□ -1.39
SYNE1-230ENST00000495090 HIGD2AQ9BW72 106 aa6.38□□□□□ -1.39
SYNE1-230ENST00000495090 UTP20O75691 2785 aaKnown RBP6.38□□□□□ -1.39
SYNE1-230ENST00000495090 APOC4P55056 127 aa6.38□□□□□ -1.39
SYNE1-230ENST00000495090 MPLKIPQ8TAP9 179 aa6.38□□□□□ -1.39
SYNE1-230ENST00000495090 RETNQ9HD89 108 aa6.38□□□□□ -1.39
SYNE1-230ENST00000495090 PKD1L2Q7Z442 2459 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 hDV103S1A0JD37 113 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 Q8NAQ8 132 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 KCNQ1DNQ9H478 68 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 EPG5Q9HCE0 2579 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 SPART-AS1P0CW21 52 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 DEFB135Q30KP9 77 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 KPRPQ5T749 579 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-230ENST00000495090 KRTAP26-1Q6PEX3 210 aa6.37□□□□□ -1.39
SYNE1-230ENST00000495090 POLQO75417 2590 aa6.36□□□□□ -1.39
SYNE1-230ENST00000495090 Q1T7F1 81 aa6.36□□□□□ -1.39
SYNE1-230ENST00000495090 Q8N377 158 aa6.36□□□□□ -1.39
SYNE1-230ENST00000495090 ZCCHC13Q8WW36 166 aaKnown RBP6.36□□□□□ -1.39
SYNE1-230ENST00000495090 NAV2Q8IVL1 2488 aa6.35□□□□□ -1.39
SYNE1-230ENST00000495090 C3orf84H3BNL1 204 aa6.35□□□□□ -1.39
SYNE1-230ENST00000495090 DEFB4AO15263 64 aa6.35□□□□□ -1.39
SYNE1-230ENST00000495090 CD164Q04900 197 aa6.35□□□□□ -1.39
SYNE1-230ENST00000495090 Q6ZRU5 148 aa6.35□□□□□ -1.39
SYNE1-230ENST00000495090 SMIM29Q86T20 159 aa6.35□□□□□ -1.39
SYNE1-230ENST00000495090 TNP2Q05952 138 aa6.34□□□□□ -1.39
SYNE1-230ENST00000495090 PRR15Q8IV56 129 aa6.34□□□□□ -1.39
SYNE1-230ENST00000495090 C15orf56Q8N910 161 aa6.34□□□□□ -1.39
SYNE1-230ENST00000495090 DHRS4-AS1Q9P1J3 65 aa6.34□□□□□ -1.39
SYNE1-230ENST00000495090 ACACBO00763 2458 aa6.34□□□□□ -1.4
SYNE1-230ENST00000495090 KRTAP1-1Q07627 177 aa6.33□□□□□ -1.4
SYNE1-230ENST00000495090 LRRK2Q5S007 2527 aa6.33□□□□□ -1.4
SYNE1-230ENST00000495090 ETDCA0A1B0GVM5 59 aa6.33□□□□□ -1.4
SYNE1-230ENST00000495090 SPRR4Q96PI1 79 aa6.33□□□□□ -1.4
SYNE1-230ENST00000495090 CYP4F30PQ9H0H9 118 aa6.33□□□□□ -1.4
SYNE1-230ENST00000495090 FAM30AQ9NZY2 134 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms