RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 EIF4EBP3O60516 100 aaPredicted RBP6.81□□□□□ -1.32
COL6A3-213ENST00000493475 IGKV2D-28P01615 120 aa6.81□□□□□ -1.32
COL6A3-213ENST00000493475 PFN2P35080 140 aa6.81□□□□□ -1.32
COL6A3-213ENST00000493475 NDUFA6P56556 154 aa6.81□□□□□ -1.32
COL6A3-213ENST00000493475 CDIP1Q9H305 208 aa6.81□□□□□ -1.32
COL6A3-213ENST00000493475 ADCYAP1P18509 176 aa6.8□□□□□ -1.32
COL6A3-213ENST00000493475 MUC2Q02817 5179 aa6.8□□□□□ -1.32
COL6A3-213ENST00000493475 FAM19A1Q7Z5A9 133 aa6.8□□□□□ -1.32
COL6A3-213ENST00000493475 LINC01546A6NGU7 62 aa6.79□□□□□ -1.32
COL6A3-213ENST00000493475 FABP9Q0Z7S8 132 aa6.79□□□□□ -1.32
COL6A3-213ENST00000493475 NDUFA5Q16718 116 aa6.79□□□□□ -1.32
COL6A3-213ENST00000493475 SLC7A5P1Q8MH63 180 aa6.79□□□□□ -1.32
COL6A3-213ENST00000493475 SEC11CQ9BY50 192 aa6.79□□□□□ -1.32
COL6A3-213ENST00000493475 ERG28Q9UKR5 140 aa6.79□□□□□ -1.32
COL6A3-213ENST00000493475 C10orf91Q5T1B1 145 aa6.78□□□□□ -1.32
COL6A3-213ENST00000493475 ZNF706Q9Y5V0 76 aaPredicted RBP6.78□□□□□ -1.32
COL6A3-213ENST00000493475 ATP6V1G1O75348 118 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 IGLC3P0DOY3 106 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 S100A12P80511 92 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 SPAG11AQ6PDA7 123 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 KRTAP13-1Q8IUC0 172 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 CBLN2Q8IUK8 224 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 TMEM126AQ9H061 195 aa6.77□□□□□ -1.33
COL6A3-213ENST00000493475 IGLV7-46A0A075B6I9 117 aa6.76□□□□□ -1.33
COL6A3-213ENST00000493475 IGLV5-39A0A0G2JS06 123 aa6.76□□□□□ -1.33
COL6A3-213ENST00000493475 PRLHP81277 87 aa6.76□□□□□ -1.33
COL6A3-213ENST00000493475 TPRXLQ17RH7 258 aa6.76□□□□□ -1.33
COL6A3-213ENST00000493475 SND1-IT1Q9HBX3 110 aa6.76□□□□□ -1.33
COL6A3-213ENST00000493475 ANAPC11Q9NYG5 84 aa6.76□□□□□ -1.33
COL6A3-213ENST00000493475 HBDP02042 147 aa6.75□□□□□ -1.33
COL6A3-213ENST00000493475 VPREB1P12018 145 aa6.75□□□□□ -1.33
COL6A3-213ENST00000493475 TMEM170BQ5T4T1 132 aa6.75□□□□□ -1.33
COL6A3-213ENST00000493475 RHEBQ15382 184 aa6.74□□□□□ -1.33
COL6A3-213ENST00000493475 KRTAP13-2Q52LG2 175 aa6.74□□□□□ -1.33
COL6A3-213ENST00000493475 RETNLBQ9BQ08 111 aa6.74□□□□□ -1.33
COL6A3-213ENST00000493475 HIGD2AQ9BW72 106 aa6.74□□□□□ -1.33
COL6A3-213ENST00000493475 LINC00587B1AMM8 73 aa6.73□□□□□ -1.33
COL6A3-213ENST00000493475 APOC3P02656 99 aa6.73□□□□□ -1.33
COL6A3-213ENST00000493475 LINC00614P0C842 121 aa6.73□□□□□ -1.33
COL6A3-213ENST00000493475 ZNF22P17026 224 aaPredicted RBP6.73□□□□□ -1.33
COL6A3-213ENST00000493475 LINC00158P58513 81 aa6.73□□□□□ -1.33
COL6A3-213ENST00000493475 ZNF625Q96I27 306 aaPredicted RBP6.73□□□□□ -1.33
COL6A3-213ENST00000493475 TMEM238C9JI98 176 aa6.72□□□□□ -1.33
COL6A3-213ENST00000493475 M0R378 163 aa6.72□□□□□ -1.33
COL6A3-213ENST00000493475 BAGE3Q86Y29 109 aa6.72□□□□□ -1.33
COL6A3-213ENST00000493475 LINC00337Q8N6G1 96 aa6.72□□□□□ -1.33
COL6A3-213ENST00000493475 TRAPPC1Q9Y5R8 145 aa6.72□□□□□ -1.33
COL6A3-213ENST00000493475 SCO1O75880 301 aa6.71□□□□□ -1.34
COL6A3-213ENST00000493475 FP248Q71RG6 208 aaPredicted RBP6.71□□□□□ -1.34
COL6A3-213ENST00000493475 SVBPQ8N300 66 aa6.71□□□□□ -1.34
COL6A3-213ENST00000493475 PLEKHB2Q96CS7 222 aa6.71□□□□□ -1.34
COL6A3-213ENST00000493475 RPS10P5Q9NQ39 176 aa6.71□□□□□ -1.34
COL6A3-213ENST00000493475 NDUFA12Q9UI09 145 aa6.71□□□□□ -1.34
COL6A3-213ENST00000493475 SNAPINO95295 136 aa6.7□□□□□ -1.34
COL6A3-213ENST00000493475 PPDPFQ9H3Y8 114 aa6.7□□□□□ -1.34
COL6A3-213ENST00000493475 PRYO14603 147 aa6.69□□□□□ -1.34
COL6A3-213ENST00000493475 MEIG1Q5JSS6 88 aa6.69□□□□□ -1.34
COL6A3-213ENST00000493475 MAP1LC3CQ9BXW4 147 aa6.69□□□□□ -1.34
COL6A3-213ENST00000493475 KRTAP9-8Q9BYQ0 159 aa6.69□□□□□ -1.34
COL6A3-213ENST00000493475 CHTOPQ9Y3Y2 248 aaKnown RBP6.69□□□□□ -1.34
COL6A3-213ENST00000493475 ETDCA0A1B0GVM5 59 aa6.68□□□□□ -1.34
COL6A3-213ENST00000493475 C11orf86A6NJI1 115 aa6.68□□□□□ -1.34
COL6A3-213ENST00000493475 HERV-K104P63124 156 aa6.68□□□□□ -1.34
COL6A3-213ENST00000493475 C18orf32Q8TCD1 76 aa6.68□□□□□ -1.34
COL6A3-213ENST00000493475 BOD1L2Q8IYS8 172 aa6.67□□□□□ -1.34
COL6A3-213ENST00000493475 FAM19A2Q8N3H0 131 aa6.67□□□□□ -1.34
COL6A3-213ENST00000493475 SPRR4Q96PI1 79 aa6.67□□□□□ -1.34
COL6A3-213ENST00000493475 A0A0U1RRA0 63 aa6.66□□□□□ -1.34
COL6A3-213ENST00000493475 SPINK1P00995 79 aa6.66□□□□□ -1.34
COL6A3-213ENST00000493475 A0A096LNJ9 63 aa6.65□□□□□ -1.34
COL6A3-213ENST00000493475 TRAV12-1A0A0B4J245 112 aa6.65□□□□□ -1.34
COL6A3-213ENST00000493475 PMCHL1Q16048 86 aa6.65□□□□□ -1.34
COL6A3-213ENST00000493475 C3orf22Q8N5N4 141 aa6.65□□□□□ -1.34
COL6A3-213ENST00000493475 CHCHD1Q96BP2 118 aaKnown RBP6.65□□□□□ -1.34
COL6A3-213ENST00000493475 TMEM223A0PJW6 202 aa6.64□□□□□ -1.35
COL6A3-213ENST00000493475 MYMXA0A1B0GTQ4 84 aa6.63□□□□□ -1.35
COL6A3-213ENST00000493475 SMIM13P0DJ93 91 aa6.63□□□□□ -1.35
COL6A3-213ENST00000493475 Q8NBF4 154 aa6.63□□□□□ -1.35
COL6A3-213ENST00000493475 IFI27L1Q96BM0 104 aa6.63□□□□□ -1.35
COL6A3-213ENST00000493475 MIEN1Q9BRT3 115 aa6.63□□□□□ -1.35
COL6A3-213ENST00000493475 KCNQ1DNQ9H478 68 aa6.63□□□□□ -1.35
COL6A3-213ENST00000493475 NCR3O14931 201 aa6.62□□□□□ -1.35
COL6A3-213ENST00000493475 S100A1P23297 94 aa6.62□□□□□ -1.35
COL6A3-213ENST00000493475 MIR7-3HGQ8N6C7 128 aa6.62□□□□□ -1.35
COL6A3-213ENST00000493475 SEC61BP60468 96 aaKnown RBP6.61□□□□□ -1.35
COL6A3-213ENST00000493475 DAND5Q8N907 189 aa6.61□□□□□ -1.35
COL6A3-213ENST00000493475 SMCR5Q8TEV8 140 aa6.61□□□□□ -1.35
COL6A3-213ENST00000493475 URB1-AS1Q96HZ7 61 aa6.61□□□□□ -1.35
COL6A3-213ENST00000493475 CBY1Q9Y3M2 126 aa6.61□□□□□ -1.35
COL6A3-213ENST00000493475 HSBP1O75506 76 aa6.6□□□□□ -1.35
COL6A3-213ENST00000493475 RPS29P62273 56 aaKnown RBP6.6□□□□□ -1.35
COL6A3-213ENST00000493475 JOSD1Q15040 202 aaPredicted RBP6.6□□□□□ -1.35
COL6A3-213ENST00000493475 Q8NDZ9 215 aa6.6□□□□□ -1.35
COL6A3-213ENST00000493475 FAT4Q6V0I7 4981 aa6.6□□□□□ -1.35
COL6A3-213ENST00000493475 SPRR1AP35321 89 aa6.59□□□□□ -1.35
COL6A3-213ENST00000493475 LINC01547P58512 204 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-213ENST00000493475 HERVK_113P61574 105 aa6.59□□□□□ -1.35
COL6A3-213ENST00000493475 GAGE2AQ6NT46 116 aa6.59□□□□□ -1.35
COL6A3-213ENST00000493475 SSBP3-AS1Q7Z2R9 100 aa6.59□□□□□ -1.35
COL6A3-213ENST00000493475 TRBV10-3A0A0K0K1G6 114 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms