RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SPINK8P0C7L1 97 aa7.83□□□□□ -1.16
PRPF40A-211ENST00000493468 PFN2P35080 140 aa7.83□□□□□ -1.16
PRPF40A-211ENST00000493468 ERASQ7Z444 233 aa7.83□□□□□ -1.16
PRPF40A-211ENST00000493468 COX17Q14061 63 aa7.82□□□□□ -1.16
PRPF40A-211ENST00000493468 LINC00483Q53H64 154 aa7.82□□□□□ -1.16
PRPF40A-211ENST00000493468 Q8NDZ9 215 aa7.82□□□□□ -1.16
PRPF40A-211ENST00000493468 MRPL18Q9H0U6 180 aaKnown RBP7.82□□□□□ -1.16
PRPF40A-211ENST00000493468 C9JQL5 133 aa7.81□□□□□ -1.16
PRPF40A-211ENST00000493468 ERG28Q9UKR5 140 aa7.81□□□□□ -1.16
PRPF40A-211ENST00000493468 RAB14P61106 215 aa7.8□□□□□ -1.16
PRPF40A-211ENST00000493468 H3BRM9 83 aa7.79□□□□□ -1.16
PRPF40A-211ENST00000493468 SSBP3-AS1Q7Z2R9 100 aa7.79□□□□□ -1.16
PRPF40A-211ENST00000493468 SCGB3A1Q96QR1 104 aa7.79□□□□□ -1.16
PRPF40A-211ENST00000493468 FLGP20930 4061 aaPredicted RBP7.78□□□□□ -1.16
PRPF40A-211ENST00000493468 IGLV8-61A0A075B6I0 122 aa7.78□□□□□ -1.16
PRPF40A-211ENST00000493468 IGLV5-39A0A0G2JS06 123 aa7.78□□□□□ -1.16
PRPF40A-211ENST00000493468 LINC01549A6NIU2 74 aa7.78□□□□□ -1.16
PRPF40A-211ENST00000493468 AKAP14Q86UN6 197 aa7.78□□□□□ -1.16
PRPF40A-211ENST00000493468 CST9LQ9H4G1 147 aa7.78□□□□□ -1.16
PRPF40A-211ENST00000493468 PRYO14603 147 aa7.77□□□□□ -1.17
PRPF40A-211ENST00000493468 ADCYAP1P18509 176 aa7.77□□□□□ -1.17
PRPF40A-211ENST00000493468 SPRR1AP35321 89 aa7.77□□□□□ -1.17
PRPF40A-211ENST00000493468 MOBPQ13875 183 aa7.77□□□□□ -1.17
PRPF40A-211ENST00000493468 PCOTHQ58A44 107 aa7.77□□□□□ -1.17
PRPF40A-211ENST00000493468 PEA15Q15121 130 aa7.76□□□□□ -1.17
PRPF40A-211ENST00000493468 SMCR5Q8TEV8 140 aa7.76□□□□□ -1.17
PRPF40A-211ENST00000493468 M0R2T5 61 aa7.75□□□□□ -1.17
PRPF40A-211ENST00000493468 PMVKQ15126 192 aa7.75□□□□□ -1.17
PRPF40A-211ENST00000493468 SFTA2Q6UW10 78 aa7.75□□□□□ -1.17
PRPF40A-211ENST00000493468 KRTAP4-16G5E9R7 235 aaPredicted RBP7.74□□□□□ -1.17
PRPF40A-211ENST00000493468 IGLV9-49A0A0B4J1Y8 123 aa7.73□□□□□ -1.17
PRPF40A-211ENST00000493468 KCNQ1DNQ9H478 68 aa7.73□□□□□ -1.17
PRPF40A-211ENST00000493468 IGLC3P0DOY3 106 aa7.72□□□□□ -1.17
PRPF40A-211ENST00000493468 GAGE2AQ6NT46 116 aa7.72□□□□□ -1.17
PRPF40A-211ENST00000493468 ETDCA0A1B0GVM5 59 aa7.71□□□□□ -1.18
PRPF40A-211ENST00000493468 LINC01546A6NGU7 62 aa7.71□□□□□ -1.18
PRPF40A-211ENST00000493468 ZNF625Q96I27 306 aaPredicted RBP7.71□□□□□ -1.18
PRPF40A-211ENST00000493468 ZNF22P17026 224 aaPredicted RBP7.69□□□□□ -1.18
PRPF40A-211ENST00000493468 ANAPC16Q96DE5 110 aa7.68□□□□□ -1.18
PRPF40A-211ENST00000493468 SSPOA2VEC9 5147 aa7.68□□□□□ -1.18
PRPF40A-211ENST00000493468 MT-ND4LP03901 98 aa7.66□□□□□ -1.18
PRPF40A-211ENST00000493468 LINC00158P58513 81 aa7.66□□□□□ -1.18
PRPF40A-211ENST00000493468 B5MCH6 92 aa7.65□□□□□ -1.18
PRPF40A-211ENST00000493468 ERC2-IT1O76042 136 aa7.65□□□□□ -1.18
PRPF40A-211ENST00000493468 COX6B2Q6YFQ2 88 aa7.65□□□□□ -1.18
PRPF40A-211ENST00000493468 NCR3O14931 201 aa7.64□□□□□ -1.19
PRPF40A-211ENST00000493468 KIAA1644Q3SXP7 199 aa7.64□□□□□ -1.19
PRPF40A-211ENST00000493468 BOD1L2Q8IYS8 172 aa7.64□□□□□ -1.19
PRPF40A-211ENST00000493468 TRAV9-1A0A075B6T8 112 aa7.63□□□□□ -1.19
PRPF40A-211ENST00000493468 TRBV10-3A0A0K0K1G6 114 aa7.63□□□□□ -1.19
PRPF40A-211ENST00000493468 S100A12P80511 92 aa7.63□□□□□ -1.19
PRPF40A-211ENST00000493468 LIMD2Q9BT23 127 aa7.63□□□□□ -1.19
PRPF40A-211ENST00000493468 USH2AO75445 5202 aa7.63□□□□□ -1.19
PRPF40A-211ENST00000493468 C9orf92A6NGG3 77 aa7.62□□□□□ -1.19
PRPF40A-211ENST00000493468 C9orf153Q5TBE3 101 aa7.62□□□□□ -1.19
PRPF40A-211ENST00000493468 FA2HQ7L5A8 372 aa7.62□□□□□ -1.19
PRPF40A-211ENST00000493468 Q9BRP9 147 aa7.62□□□□□ -1.19
PRPF40A-211ENST00000493468 Q6ZRX8 168 aa7.61□□□□□ -1.19
PRPF40A-211ENST00000493468 A0A0U1RRA0 63 aa7.6□□□□□ -1.19
PRPF40A-211ENST00000493468 C11orf86A6NJI1 115 aa7.59□□□□□ -1.19
PRPF40A-211ENST00000493468 NDUFA6P56556 154 aa7.59□□□□□ -1.19
PRPF40A-211ENST00000493468 ATP6V1G1O75348 118 aa7.58□□□□□ -1.2
PRPF40A-211ENST00000493468 IGLV6-57P01721 117 aa7.58□□□□□ -1.2
PRPF40A-211ENST00000493468 TMEM170BQ5T4T1 132 aa7.58□□□□□ -1.2
PRPF40A-211ENST00000493468 SMCO4Q9NRQ5 59 aa7.58□□□□□ -1.2
PRPF40A-211ENST00000493468 SMIM13P0DJ93 91 aa7.57□□□□□ -1.2
PRPF40A-211ENST00000493468 MIR7-3HGQ8N6C7 128 aa7.57□□□□□ -1.2
PRPF40A-211ENST00000493468 A0A096LNJ9 63 aa7.56□□□□□ -1.2
PRPF40A-211ENST00000493468 CFC1P0CG37 223 aa7.56□□□□□ -1.2
PRPF40A-211ENST00000493468 FCGBPQ9Y6R7 5405 aaPredicted RBP7.55□□□□□ -1.2
PRPF40A-211ENST00000493468 C5orf52A6NGY3 159 aa7.55□□□□□ -1.2
PRPF40A-211ENST00000493468 RPL37P61927 97 aaKnown RBP7.55□□□□□ -1.2
PRPF40A-211ENST00000493468 TRBV10-2A0A0K0K1G8 114 aa7.54□□□□□ -1.2
PRPF40A-211ENST00000493468 DDTP30046 118 aa7.54□□□□□ -1.2
PRPF40A-211ENST00000493468 JOSD1Q15040 202 aaPredicted RBP7.54□□□□□ -1.2
PRPF40A-211ENST00000493468 MEIG1Q5JSS6 88 aa7.54□□□□□ -1.2
PRPF40A-211ENST00000493468 TMEM223A0PJW6 202 aa7.53□□□□□ -1.2
PRPF40A-211ENST00000493468 LINC00587B1AMM8 73 aa7.53□□□□□ -1.2
PRPF40A-211ENST00000493468 HERV-K104P63124 156 aa7.53□□□□□ -1.2
PRPF40A-211ENST00000493468 LOC107984156A0A0G2JMH3 177 aa7.52□□□□□ -1.21
PRPF40A-211ENST00000493468 BAGE3Q86Y29 109 aa7.52□□□□□ -1.21
PRPF40A-211ENST00000493468 ARL17AQ8IVW1 177 aa7.52□□□□□ -1.21
PRPF40A-211ENST00000493468 HBDP02042 147 aa7.51□□□□□ -1.21
PRPF40A-211ENST00000493468 hCG_2014768A0A024R1R8 64 aa7.5□□□□□ -1.21
PRPF40A-211ENST00000493468 MAP1LC3CQ9BXW4 147 aa7.5□□□□□ -1.21
PRPF40A-211ENST00000493468 SPRR1BP22528 89 aa7.49□□□□□ -1.21
PRPF40A-211ENST00000493468 CD164Q04900 197 aa7.49□□□□□ -1.21
PRPF40A-211ENST00000493468 SLC25A34Q6PIV7 304 aa7.49□□□□□ -1.21
PRPF40A-211ENST00000493468 HRCT1Q6UXD1 115 aa7.49□□□□□ -1.21
PRPF40A-211ENST00000493468 ST20-AS1Q8NBB2 130 aa7.49□□□□□ -1.21
PRPF40A-211ENST00000493468 SPANXB1Q9NS25 103 aaPredicted RBP7.49□□□□□ -1.21
PRPF40A-211ENST00000493468 COX19Q49B96 90 aa7.48□□□□□ -1.21
PRPF40A-211ENST00000493468 Q5XG85 94 aa7.48□□□□□ -1.21
PRPF40A-211ENST00000493468 CHTOPQ9Y3Y2 248 aaKnown RBP7.48□□□□□ -1.21
PRPF40A-211ENST00000493468 URB1-AS1Q96HZ7 61 aa7.47□□□□□ -1.21
PRPF40A-211ENST00000493468 KRTAP9-8Q9BYQ0 159 aa7.47□□□□□ -1.21
PRPF40A-211ENST00000493468 TRAV23DV6A0A075B6W5 121 aa7.46□□□□□ -1.22
PRPF40A-211ENST00000493468 LINC00614P0C842 121 aa7.46□□□□□ -1.22
PRPF40A-211ENST00000493468 MYMXA0A1B0GTQ4 84 aa7.45□□□□□ -1.22
PRPF40A-211ENST00000493468 ZNF73O43830 326 aaPredicted RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms