RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 URB1-AS1Q96HZ7 61 aa9.03□□□□□ -0.96
COL6A3-212ENST00000491769 SERTAD4-AS1Q5TG53 156 aa9.03□□□□□ -0.96
COL6A3-212ENST00000491769 CDIP1Q9H305 208 aa9.03□□□□□ -0.96
COL6A3-212ENST00000491769 LINC00846Q9NV44 126 aa9.03□□□□□ -0.96
COL6A3-212ENST00000491769 MUC22E2RYF6 1773 aaPredicted RBP9.02□□□□□ -0.97
COL6A3-212ENST00000491769 SPATA3Q8NHX4 192 aa9.02□□□□□ -0.97
COL6A3-212ENST00000491769 H3BNG1 76 aa9.02□□□□□ -0.97
COL6A3-212ENST00000491769 LINC00476Q8WZB0 136 aa9□□□□□ -0.97
COL6A3-212ENST00000491769 C2CD3Q4AC94 2353 aa9□□□□□ -0.97
COL6A3-212ENST00000491769 CXCL6P80162 114 aa8.99□□□□□ -0.97
COL6A3-212ENST00000491769 SPAG11AQ6PDA7 123 aa8.99□□□□□ -0.97
COL6A3-212ENST00000491769 BCE1O60756 84 aa8.98□□□□□ -0.97
COL6A3-212ENST00000491769 ST20-AS1Q8NBB2 130 aa8.98□□□□□ -0.97
COL6A3-212ENST00000491769 JMJD1CQ15652 2540 aa8.98□□□□□ -0.97
COL6A3-212ENST00000491769 SMR3BP02814 79 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-212ENST00000491769 LRRK2Q5S007 2527 aa8.97□□□□□ -0.97
COL6A3-212ENST00000491769 IGHV3OR16-9A0A0B4J2B5 98 aa8.97□□□□□ -0.97
COL6A3-212ENST00000491769 COX8CQ7Z4L0 72 aa8.97□□□□□ -0.97
COL6A3-212ENST00000491769 PIEZO2Q9H5I5 2752 aa8.96□□□□□ -0.97
COL6A3-212ENST00000491769 Q6ZRX8 168 aa8.96□□□□□ -0.98
COL6A3-212ENST00000491769 C9orf92A6NGG3 77 aa8.96□□□□□ -0.98
COL6A3-212ENST00000491769 PIEZO1Q92508 2521 aa8.95□□□□□ -0.98
COL6A3-212ENST00000491769 ELOF1P60002 83 aaKnown RBP8.95□□□□□ -0.98
COL6A3-212ENST00000491769 CPAMD8Q8IZJ3 1885 aa8.94□□□□□ -0.98
COL6A3-212ENST00000491769 Q8NAQ8 132 aa8.94□□□□□ -0.98
COL6A3-212ENST00000491769 SPINT4Q6UDR6 99 aa8.93□□□□□ -0.98
COL6A3-212ENST00000491769 IGLV5-39A0A0G2JS06 123 aa8.93□□□□□ -0.98
COL6A3-212ENST00000491769 DNAH10OSP0CZ25 163 aa8.92□□□□□ -0.98
COL6A3-212ENST00000491769 LINC00310P59036 64 aa8.92□□□□□ -0.98
COL6A3-212ENST00000491769 LINC00304Q8N9R0 145 aa8.91□□□□□ -0.98
COL6A3-212ENST00000491769 A0A096LNJ9 63 aa8.91□□□□□ -0.98
COL6A3-212ENST00000491769 FAM168BA1KXE4 195 aa8.91□□□□□ -0.98
COL6A3-212ENST00000491769 TRAV22A0A0B4J277 110 aa8.91□□□□□ -0.98
COL6A3-212ENST00000491769 APLNQ9ULZ1 77 aa8.91□□□□□ -0.98
COL6A3-212ENST00000491769 GVQW2A0A096LPI5 108 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-212ENST00000491769 C10orf142B7Z368 130 aa8.89□□□□□ -0.99
COL6A3-212ENST00000491769 ZFYVE26Q68DK2 2539 aa8.89□□□□□ -0.99
COL6A3-212ENST00000491769 K7EIL1 84 aa8.87□□□□□ -0.99
COL6A3-212ENST00000491769 C8orf87E5RJ46 101 aa8.86□□□□□ -0.99
COL6A3-212ENST00000491769 DSCR10P59022 87 aa8.86□□□□□ -0.99
COL6A3-212ENST00000491769 KRTAP10-11P60412 298 aa8.85□□□□□ -0.99
COL6A3-212ENST00000491769 OBSCN-AS1Q96MR7 158 aa8.84□□□□□ -0.99
COL6A3-212ENST00000491769 FAM19A4Q96LR4 140 aa8.84□□□□□ -0.99
COL6A3-212ENST00000491769 IGLV5-37A0A075B6J1 123 aa8.84□□□□□ -0.99
COL6A3-212ENST00000491769 SSBP3-AS1Q7Z2R9 100 aa8.84□□□□□ -0.99
COL6A3-212ENST00000491769 TM2D3Q9BRN9 247 aa8.83□□□□□ -1
COL6A3-212ENST00000491769 IGLV6-57P01721 117 aa8.82□□□□□ -1
COL6A3-212ENST00000491769 FAM218AQ96MZ4 157 aa8.82□□□□□ -1
COL6A3-212ENST00000491769 RBM12B-AS1Q9P1G2 102 aa8.82□□□□□ -1
COL6A3-212ENST00000491769 FN1P02751 2386 aaKnown RBP8.82□□□□□ -1
COL6A3-212ENST00000491769 ABCA12Q86UK0 2595 aa8.81□□□□□ -1
COL6A3-212ENST00000491769 MRPL34Q9BQ48 92 aaKnown RBP8.81□□□□□ -1
COL6A3-212ENST00000491769 LINC01554Q52M75 96 aa8.81□□□□□ -1
COL6A3-212ENST00000491769 LOC101927531A0A1B0GV80 90 aa8.81□□□□□ -1
COL6A3-212ENST00000491769 Q6ZQT0 140 aa8.81□□□□□ -1
COL6A3-212ENST00000491769 TLN1Q9Y490 2541 aaKnown RBP8.8□□□□□ -1
COL6A3-212ENST00000491769 A0A1B0GW54 56 aa8.8□□□□□ -1
COL6A3-212ENST00000491769 H3BPC8 53 aa8.8□□□□□ -1
COL6A3-212ENST00000491769 MYO9AB2RTY4 2548 aa8.8□□□□□ -1
COL6A3-212ENST00000491769 LINC01600Q96MT4 127 aa8.79□□□□□ -1
COL6A3-212ENST00000491769 A8MWP4 228 aa8.79□□□□□ -1
COL6A3-212ENST00000491769 COL4A2P08572 1712 aa8.78□□□□□ -1
COL6A3-212ENST00000491769 LINC00336Q6ZUF6 198 aa8.77□□□□□ -1.01
COL6A3-212ENST00000491769 IGLV5-45A0A087WSX0 123 aa8.77□□□□□ -1.01
COL6A3-212ENST00000491769 A0A087WTM6 91 aa8.76□□□□□ -1.01
COL6A3-212ENST00000491769 COL27A1Q8IZC6 1860 aaPredicted RBP8.76□□□□□ -1.01
COL6A3-212ENST00000491769 PTPRBP23467 1997 aa8.75□□□□□ -1.01
COL6A3-212ENST00000491769 TRBV7-4A0A0J9YYF1 115 aa8.75□□□□□ -1.01
COL6A3-212ENST00000491769 K7EQZ3 153 aa8.75□□□□□ -1.01
COL6A3-212ENST00000491769 ZNF861PO60384 105 aa8.75□□□□□ -1.01
COL6A3-212ENST00000491769 LOC110117498A0A087WWA1 95 aa8.75□□□□□ -1.01
COL6A3-212ENST00000491769 ZNF462Q96JM2 2506 aa8.74□□□□□ -1.01
COL6A3-212ENST00000491769 IGLV1-50A0A075B6I6 118 aa8.74□□□□□ -1.01
COL6A3-212ENST00000491769 CRIPTQ9P021 101 aa8.74□□□□□ -1.01
COL6A3-212ENST00000491769 VPREB1P12018 145 aa8.74□□□□□ -1.01
COL6A3-212ENST00000491769 ANAPC11Q9NYG5 84 aa8.74□□□□□ -1.01
COL6A3-212ENST00000491769 LINC01546A6NGU7 62 aa8.72□□□□□ -1.01
COL6A3-212ENST00000491769 M0R2T5 61 aa8.72□□□□□ -1.01
COL6A3-212ENST00000491769 LINC00528Q8N1L1 170 aa8.72□□□□□ -1.01
COL6A3-212ENST00000491769 TLN2Q9Y4G6 2542 aa8.69□□□□□ -1.02
COL6A3-212ENST00000491769 C9orf129Q5T035 196 aaKnown RBP8.68□□□□□ -1.02
COL6A3-212ENST00000491769 IGFL1Q6UW32 110 aa8.68□□□□□ -1.02
COL6A3-212ENST00000491769 C8orf17Q9NRJ1 99 aa8.68□□□□□ -1.02
COL6A3-212ENST00000491769 C19orf73Q9NVV2 129 aa8.67□□□□□ -1.02
COL6A3-212ENST00000491769 IGLV7-43P04211 117 aa8.67□□□□□ -1.02
COL6A3-212ENST00000491769 COA5Q86WW8 74 aa8.67□□□□□ -1.02
COL6A3-212ENST00000491769 C15orf56Q8N910 161 aa8.67□□□□□ -1.02
COL6A3-212ENST00000491769 A0A0D9SG42 100 aa8.66□□□□□ -1.02
COL6A3-212ENST00000491769 KRTAP10-3P60369 221 aa8.65□□□□□ -1.02
COL6A3-212ENST00000491769 A0A1B0GVX0 72 aa8.64□□□□□ -1.03
COL6A3-212ENST00000491769 A0A0G2JQZ4 141 aa8.64□□□□□ -1.03
COL6A3-212ENST00000491769 A0A1W2PNN7 141 aa8.64□□□□□ -1.03
COL6A3-212ENST00000491769 KCNQ1DNQ9H478 68 aa8.64□□□□□ -1.03
COL6A3-212ENST00000491769 UQCR11O14957 56 aa8.64□□□□□ -1.03
COL6A3-212ENST00000491769 Q6ZSA8 131 aa8.63□□□□□ -1.03
COL6A3-212ENST00000491769 CSNK1G2-AS1Q8NCQ2 148 aa8.63□□□□□ -1.03
COL6A3-212ENST00000491769 PSORS1C2Q9UIG4 136 aa8.62□□□□□ -1.03
COL6A3-212ENST00000491769 F8P00451 2351 aa8.61□□□□□ -1.03
COL6A3-212ENST00000491769 CHD8Q9HCK8 2581 aa8.61□□□□□ -1.03
COL6A3-212ENST00000491769 ZNF575Q86XF7 245 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms