RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 SCGB3A1Q96QR1 104 aa8.89□□□□□ -0.99
USP48-210ENST00000489108 FAM19A2Q8N3H0 131 aa8.88□□□□□ -0.99
USP48-210ENST00000489108 SMCR5Q8TEV8 140 aa8.88□□□□□ -0.99
USP48-210ENST00000489108 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.87□□□□□ -0.99
USP48-210ENST00000489108 PCOTHQ58A44 107 aa8.87□□□□□ -0.99
USP48-210ENST00000489108 CST9LQ9H4G1 147 aa8.87□□□□□ -0.99
USP48-210ENST00000489108 ERG28Q9UKR5 140 aa8.87□□□□□ -0.99
USP48-210ENST00000489108 IGLV8-61A0A075B6I0 122 aa8.86□□□□□ -0.99
USP48-210ENST00000489108 SLC25A20O43772 301 aa8.86□□□□□ -0.99
USP48-210ENST00000489108 RPS29P62273 56 aaKnown RBP8.86□□□□□ -0.99
USP48-210ENST00000489108 MRPL18Q9H0U6 180 aaKnown RBP8.86□□□□□ -0.99
USP48-210ENST00000489108 ZNF625Q96I27 306 aaPredicted RBP8.85□□□□□ -0.99
USP48-210ENST00000489108 PEA15Q15121 130 aa8.84□□□□□ -0.99
USP48-210ENST00000489108 AKAP14Q86UN6 197 aa8.84□□□□□ -0.99
USP48-210ENST00000489108 IGLV9-49A0A0B4J1Y8 123 aa8.83□□□□□ -1
USP48-210ENST00000489108 H3BRM9 83 aa8.83□□□□□ -1
USP48-210ENST00000489108 M0R2T5 61 aa8.83□□□□□ -1
USP48-210ENST00000489108 MOBPQ13875 183 aa8.83□□□□□ -1
USP48-210ENST00000489108 COX17Q14061 63 aa8.83□□□□□ -1
USP48-210ENST00000489108 LINC00483Q53H64 154 aa8.83□□□□□ -1
USP48-210ENST00000489108 IGLV5-39A0A0G2JS06 123 aa8.82□□□□□ -1
USP48-210ENST00000489108 GAGE2AQ6NT46 116 aa8.82□□□□□ -1
USP48-210ENST00000489108 SSBP3-AS1Q7Z2R9 100 aa8.82□□□□□ -1
USP48-210ENST00000489108 PMVKQ15126 192 aa8.81□□□□□ -1
USP48-210ENST00000489108 PRYO14603 147 aa8.78□□□□□ -1
USP48-210ENST00000489108 SPRR1AP35321 89 aa8.78□□□□□ -1
USP48-210ENST00000489108 KIAA1644Q3SXP7 199 aa8.78□□□□□ -1
USP48-210ENST00000489108 KRTAP4-16G5E9R7 235 aaPredicted RBP8.77□□□□□ -1.01
USP48-210ENST00000489108 ETDCA0A1B0GVM5 59 aa8.76□□□□□ -1.01
USP48-210ENST00000489108 LINC00158P58513 81 aa8.76□□□□□ -1.01
USP48-210ENST00000489108 KCNQ1DNQ9H478 68 aa8.76□□□□□ -1.01
USP48-210ENST00000489108 ERC2-IT1O76042 136 aa8.75□□□□□ -1.01
USP48-210ENST00000489108 IGLC3P0DOY3 106 aa8.75□□□□□ -1.01
USP48-210ENST00000489108 ZNF22P17026 224 aaPredicted RBP8.75□□□□□ -1.01
USP48-210ENST00000489108 A0A0U1RRA0 63 aa8.74□□□□□ -1.01
USP48-210ENST00000489108 C9orf92A6NGG3 77 aa8.74□□□□□ -1.01
USP48-210ENST00000489108 LINC01549A6NIU2 74 aa8.74□□□□□ -1.01
USP48-210ENST00000489108 FLGP20930 4061 aaPredicted RBP8.73□□□□□ -1.01
USP48-210ENST00000489108 LINC01546A6NGU7 62 aa8.72□□□□□ -1.01
USP48-210ENST00000489108 NCR3O14931 201 aa8.72□□□□□ -1.01
USP48-210ENST00000489108 ANAPC16Q96DE5 110 aa8.72□□□□□ -1.01
USP48-210ENST00000489108 MT-ND4LP03901 98 aa8.71□□□□□ -1.02
USP48-210ENST00000489108 NDUFA6P56556 154 aa8.71□□□□□ -1.02
USP48-210ENST00000489108 B5MCH6 92 aa8.7□□□□□ -1.02
USP48-210ENST00000489108 BOD1L2Q8IYS8 172 aa8.7□□□□□ -1.02
USP48-210ENST00000489108 TRBV10-3A0A0K0K1G6 114 aa8.69□□□□□ -1.02
USP48-210ENST00000489108 SFTA2Q6UW10 78 aa8.69□□□□□ -1.02
USP48-210ENST00000489108 COX6B2Q6YFQ2 88 aa8.69□□□□□ -1.02
USP48-210ENST00000489108 C9orf153Q5TBE3 101 aa8.68□□□□□ -1.02
USP48-210ENST00000489108 Q9BRP9 147 aa8.67□□□□□ -1.02
USP48-210ENST00000489108 hCG_2014768A0A024R1R8 64 aa8.66□□□□□ -1.02
USP48-210ENST00000489108 SMIM13P0DJ93 91 aa8.66□□□□□ -1.02
USP48-210ENST00000489108 TRAV9-1A0A075B6T8 112 aa8.65□□□□□ -1.02
USP48-210ENST00000489108 C11orf86A6NJI1 115 aa8.65□□□□□ -1.02
USP48-210ENST00000489108 ATP6V1G1O75348 118 aa8.65□□□□□ -1.02
USP48-210ENST00000489108 TMEM170BQ5T4T1 132 aa8.65□□□□□ -1.02
USP48-210ENST00000489108 FA2HQ7L5A8 372 aa8.65□□□□□ -1.02
USP48-210ENST00000489108 SSPOA2VEC9 5147 aa8.63□□□□□ -1.03
USP48-210ENST00000489108 SMCO4Q9NRQ5 59 aa8.63□□□□□ -1.03
USP48-210ENST00000489108 IGLV6-57P01721 117 aa8.62□□□□□ -1.03
USP48-210ENST00000489108 S100A12P80511 92 aa8.62□□□□□ -1.03
USP48-210ENST00000489108 MIR7-3HGQ8N6C7 128 aa8.62□□□□□ -1.03
USP48-210ENST00000489108 HRCT1Q6UXD1 115 aa8.61□□□□□ -1.03
USP48-210ENST00000489108 Q6ZRX8 168 aa8.61□□□□□ -1.03
USP48-210ENST00000489108 A0A096LNJ9 63 aa8.6□□□□□ -1.03
USP48-210ENST00000489108 BAGE3Q86Y29 109 aa8.6□□□□□ -1.03
USP48-210ENST00000489108 LIMD2Q9BT23 127 aa8.6□□□□□ -1.03
USP48-210ENST00000489108 MEIG1Q5JSS6 88 aa8.59□□□□□ -1.03
USP48-210ENST00000489108 USH2AO75445 5202 aa8.58□□□□□ -1.04
USP48-210ENST00000489108 DDTP30046 118 aa8.58□□□□□ -1.04
USP48-210ENST00000489108 ST20-AS1Q8NBB2 130 aa8.58□□□□□ -1.04
USP48-210ENST00000489108 TMEM223A0PJW6 202 aa8.56□□□□□ -1.04
USP48-210ENST00000489108 RPL37P61927 97 aaKnown RBP8.54□□□□□ -1.04
USP48-210ENST00000489108 PMCHL1Q16048 86 aa8.54□□□□□ -1.04
USP48-210ENST00000489108 URB1-AS1Q96HZ7 61 aa8.54□□□□□ -1.04
USP48-210ENST00000489108 HBDP02042 147 aa8.53□□□□□ -1.04
USP48-210ENST00000489108 FABP9Q0Z7S8 132 aa8.53□□□□□ -1.04
USP48-210ENST00000489108 CHTOPQ9Y3Y2 248 aaKnown RBP8.53□□□□□ -1.04
USP48-210ENST00000489108 TRBV10-2A0A0K0K1G8 114 aa8.52□□□□□ -1.05
USP48-210ENST00000489108 HERV-K104P63124 156 aa8.52□□□□□ -1.05
USP48-210ENST00000489108 JOSD1Q15040 202 aaPredicted RBP8.52□□□□□ -1.05
USP48-210ENST00000489108 LINC00614P0C842 121 aa8.51□□□□□ -1.05
USP48-210ENST00000489108 FCGBPQ9Y6R7 5405 aaPredicted RBP8.5□□□□□ -1.05
USP48-210ENST00000489108 LINC00587B1AMM8 73 aa8.5□□□□□ -1.05
USP48-210ENST00000489108 LOC107984156A0A0G2JMH3 177 aa8.49□□□□□ -1.05
USP48-210ENST00000489108 Q6Q795 121 aa8.49□□□□□ -1.05
USP48-210ENST00000489108 ARL17AQ8IVW1 177 aa8.49□□□□□ -1.05
USP48-210ENST00000489108 MAP1LC3CQ9BXW4 147 aa8.49□□□□□ -1.05
USP48-210ENST00000489108 CFC1P0CG37 223 aa8.48□□□□□ -1.05
USP48-210ENST00000489108 S100A7L2Q5SY68 101 aa8.48□□□□□ -1.05
USP48-210ENST00000489108 KRTAP9-8Q9BYQ0 159 aa8.48□□□□□ -1.05
USP48-210ENST00000489108 C5orf52A6NGY3 159 aa8.47□□□□□ -1.05
USP48-210ENST00000489108 TRAV23DV6A0A075B6W5 121 aa8.46□□□□□ -1.06
USP48-210ENST00000489108 MYMXA0A1B0GTQ4 84 aa8.46□□□□□ -1.06
USP48-210ENST00000489108 H7C2G1 150 aa8.46□□□□□ -1.06
USP48-210ENST00000489108 SPRR1BP22528 89 aa8.46□□□□□ -1.06
USP48-210ENST00000489108 C18orf32Q8TCD1 76 aa8.46□□□□□ -1.06
USP48-210ENST00000489108 SPANXB1Q9NS25 103 aaPredicted RBP8.46□□□□□ -1.06
USP48-210ENST00000489108 ZNF73O43830 326 aaPredicted RBP8.45□□□□□ -1.06
USP48-210ENST00000489108 S100PP25815 95 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms