RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 SFTA2Q6UW10 78 aa10.6□□□□□ -0.71
HDAC6-231ENST00000488905 CBLN2Q8IUK8 224 aa10.6□□□□□ -0.71
HDAC6-231ENST00000488905 C3orf22Q8N5N4 141 aa10.6□□□□□ -0.71
HDAC6-231ENST00000488905 HBDP02042 147 aa10.59□□□□□ -0.71
HDAC6-231ENST00000488905 URB1-AS1Q96HZ7 61 aa10.59□□□□□ -0.71
HDAC6-231ENST00000488905 C11orf86A6NJI1 115 aa10.58□□□□□ -0.72
HDAC6-231ENST00000488905 HIGD2AQ9BW72 106 aa10.58□□□□□ -0.72
HDAC6-231ENST00000488905 TMEM170BQ5T4T1 132 aa10.57□□□□□ -0.72
HDAC6-231ENST00000488905 C18orf32Q8TCD1 76 aa10.57□□□□□ -0.72
HDAC6-231ENST00000488905 LINC00614P0C842 121 aa10.56□□□□□ -0.72
HDAC6-231ENST00000488905 PMCHL1Q16048 86 aa10.56□□□□□ -0.72
HDAC6-231ENST00000488905 RHEBQ15382 184 aa10.55□□□□□ -0.72
HDAC6-231ENST00000488905 BAGE3Q86Y29 109 aa10.54□□□□□ -0.72
HDAC6-231ENST00000488905 SPRR4Q96PI1 79 aa10.54□□□□□ -0.72
HDAC6-231ENST00000488905 PPDPFQ9H3Y8 114 aa10.54□□□□□ -0.72
HDAC6-231ENST00000488905 LINC00158P58513 81 aa10.53□□□□□ -0.72
HDAC6-231ENST00000488905 IFITM2Q01629 132 aa10.53□□□□□ -0.72
HDAC6-231ENST00000488905 SPAG11AQ6PDA7 123 aa10.53□□□□□ -0.72
HDAC6-231ENST00000488905 RPS10P5Q9NQ39 176 aa10.53□□□□□ -0.72
HDAC6-231ENST00000488905 TRAPPC1Q9Y5R8 145 aa10.52□□□□□ -0.73
HDAC6-231ENST00000488905 C10orf91Q5T1B1 145 aa10.51□□□□□ -0.73
HDAC6-231ENST00000488905 COMMD7Q86VX2 200 aa10.51□□□□□ -0.73
HDAC6-231ENST00000488905 ZNF706Q9Y5V0 76 aaPredicted RBP10.51□□□□□ -0.73
HDAC6-231ENST00000488905 A0A0U1RRA0 63 aa10.5□□□□□ -0.73
HDAC6-231ENST00000488905 CHTOPQ9Y3Y2 248 aaKnown RBP10.5□□□□□ -0.73
HDAC6-231ENST00000488905 PRYO14603 147 aa10.49□□□□□ -0.73
HDAC6-231ENST00000488905 FP248Q71RG6 208 aaPredicted RBP10.49□□□□□ -0.73
HDAC6-231ENST00000488905 TMEM223A0PJW6 202 aa10.48□□□□□ -0.73
HDAC6-231ENST00000488905 SMIM13P0DJ93 91 aa10.46□□□□□ -0.73
HDAC6-231ENST00000488905 C4orf48Q5BLP8 95 aa10.46□□□□□ -0.73
HDAC6-231ENST00000488905 BOD1L2Q8IYS8 172 aa10.46□□□□□ -0.73
HDAC6-231ENST00000488905 LINC00337Q8N6G1 96 aa10.46□□□□□ -0.73
HDAC6-231ENST00000488905 Q8NBF4 154 aa10.46□□□□□ -0.73
HDAC6-231ENST00000488905 NCR3O14931 201 aa10.45□□□□□ -0.74
HDAC6-231ENST00000488905 SPRR1AP35321 89 aa10.45□□□□□ -0.74
HDAC6-231ENST00000488905 DAND5Q8N907 189 aa10.45□□□□□ -0.74
HDAC6-231ENST00000488905 TRAV12-1A0A0B4J245 112 aa10.44□□□□□ -0.74
HDAC6-231ENST00000488905 ATP6V1G1O75348 118 aa10.44□□□□□ -0.74
HDAC6-231ENST00000488905 MEIG1Q5JSS6 88 aa10.44□□□□□ -0.74
HDAC6-231ENST00000488905 KCNQ1DNQ9H478 68 aa10.44□□□□□ -0.74
HDAC6-231ENST00000488905 KRTAP13-3Q3SY46 172 aa10.43□□□□□ -0.74
HDAC6-231ENST00000488905 MIR7-3HGQ8N6C7 128 aa10.43□□□□□ -0.74
HDAC6-231ENST00000488905 ETDCA0A1B0GVM5 59 aa10.42□□□□□ -0.74
HDAC6-231ENST00000488905 KRTAP4-16G5E9R7 235 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-231ENST00000488905 IFI27L1Q96BM0 104 aa10.42□□□□□ -0.74
HDAC6-231ENST00000488905 HERV-K104P63124 156 aa10.41□□□□□ -0.74
HDAC6-231ENST00000488905 SMCR5Q8TEV8 140 aa10.41□□□□□ -0.74
HDAC6-231ENST00000488905 TRBV10-3A0A0K0K1G6 114 aa10.4□□□□□ -0.74
HDAC6-231ENST00000488905 SPINK1P00995 79 aa10.4□□□□□ -0.74
HDAC6-231ENST00000488905 LINC00483Q53H64 154 aa10.4□□□□□ -0.74
HDAC6-231ENST00000488905 CHCHD1Q96BP2 118 aaKnown RBP10.39□□□□□ -0.75
HDAC6-231ENST00000488905 KRTAP9-6A0A140TA67 174 aa10.38□□□□□ -0.75
HDAC6-231ENST00000488905 ASB16-AS1Q495Z4 193 aa10.38□□□□□ -0.75
HDAC6-231ENST00000488905 NDUFA12Q9UI09 145 aa10.38□□□□□ -0.75
HDAC6-231ENST00000488905 LINC00587B1AMM8 73 aa10.37□□□□□ -0.75
HDAC6-231ENST00000488905 APOC3P02656 99 aa10.36□□□□□ -0.75
HDAC6-231ENST00000488905 S100A12P80511 92 aa10.36□□□□□ -0.75
HDAC6-231ENST00000488905 MYMXA0A1B0GTQ4 84 aa10.35□□□□□ -0.75
HDAC6-231ENST00000488905 MOBPQ13875 183 aa10.35□□□□□ -0.75
HDAC6-231ENST00000488905 GAGE2AQ6NT46 116 aa10.35□□□□□ -0.75
HDAC6-231ENST00000488905 MAP1LC3CQ9BXW4 147 aa10.35□□□□□ -0.75
HDAC6-231ENST00000488905 B5MCH6 92 aa10.34□□□□□ -0.75
HDAC6-231ENST00000488905 IGLV9-49A0A0B4J1Y8 123 aa10.33□□□□□ -0.76
HDAC6-231ENST00000488905 SNAPINO95295 136 aa10.33□□□□□ -0.76
HDAC6-231ENST00000488905 RPS29P62273 56 aaKnown RBP10.33□□□□□ -0.76
HDAC6-231ENST00000488905 FAM19A2Q8N3H0 131 aa10.33□□□□□ -0.76
HDAC6-231ENST00000488905 ERC2-IT1O76042 136 aa10.32□□□□□ -0.76
HDAC6-231ENST00000488905 TSPEAR-AS2P59090 65 aa10.32□□□□□ -0.76
HDAC6-231ENST00000488905 SVBPQ8N300 66 aa10.32□□□□□ -0.76
HDAC6-231ENST00000488905 DDTP30046 118 aa10.31□□□□□ -0.76
HDAC6-231ENST00000488905 SEC61BP60468 96 aaKnown RBP10.31□□□□□ -0.76
HDAC6-231ENST00000488905 NDUFA5Q16718 116 aa10.31□□□□□ -0.76
HDAC6-231ENST00000488905 Q8N377 158 aa10.31□□□□□ -0.76
HDAC6-231ENST00000488905 YPEL4Q96NS1 127 aa10.31□□□□□ -0.76
HDAC6-231ENST00000488905 LOC107984156A0A0G2JMH3 177 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 TRBV10-2A0A0K0K1G8 114 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 H0Y8G0 127 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 HSBP1O75506 76 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 Q6ZRX8 168 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 ARL17AQ8IVW1 177 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 Q9BRP9 147 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 KRTAP4-1Q9BYQ7 146 aa10.3□□□□□ -0.76
HDAC6-231ENST00000488905 SSBP3-AS1Q7Z2R9 100 aa10.29□□□□□ -0.76
HDAC6-231ENST00000488905 LINC01547P58512 204 aaPredicted RBP10.28□□□□□ -0.76
HDAC6-231ENST00000488905 SPANXB1Q9NS25 103 aaPredicted RBP10.28□□□□□ -0.76
HDAC6-231ENST00000488905 LEPROTO15243 131 aa10.27□□□□□ -0.77
HDAC6-231ENST00000488905 SLC25A20O43772 301 aa10.26□□□□□ -0.77
HDAC6-231ENST00000488905 MIEN1Q9BRT3 115 aa10.26□□□□□ -0.77
HDAC6-231ENST00000488905 J3QQQ9 107 aa10.24□□□□□ -0.77
HDAC6-231ENST00000488905 IGLV6-57P01721 117 aa10.24□□□□□ -0.77
HDAC6-231ENST00000488905 PLNP26678 52 aa10.24□□□□□ -0.77
HDAC6-231ENST00000488905 LEPROTL1O95214 131 aa10.23□□□□□ -0.77
HDAC6-231ENST00000488905 NDUFC2O95298 119 aa10.23□□□□□ -0.77
HDAC6-231ENST00000488905 NMUP48645 174 aa10.23□□□□□ -0.77
HDAC6-231ENST00000488905 S100A7L2Q5SY68 101 aa10.23□□□□□ -0.77
HDAC6-231ENST00000488905 TRAV23DV6A0A075B6W5 121 aa10.22□□□□□ -0.77
HDAC6-231ENST00000488905 JOSD1Q15040 202 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-231ENST00000488905 XP32Q5T750 250 aa10.22□□□□□ -0.77
HDAC6-231ENST00000488905 C9orf153Q5TBE3 101 aa10.22□□□□□ -0.77
HDAC6-231ENST00000488905 LINC00310P59036 64 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms