RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PRR34Q9NV39 138 aa12.11□□□□□ -0.47
VIM-206ENST00000487938 CCKP06307 115 aa12.11□□□□□ -0.47
VIM-206ENST00000487938 RPL18AQ02543 176 aaKnown RBP12.09□□□□□ -0.47
VIM-206ENST00000487938 WFDC9Q8NEX5 89 aa12.09□□□□□ -0.47
VIM-206ENST00000487938 A0A0J9YWU9 116 aa12.08□□□□□ -0.48
VIM-206ENST00000487938 LINC00575Q6W349 94 aa12.08□□□□□ -0.48
VIM-206ENST00000487938 JMJD7-PLA2G4BH0Y9G9 81 aa12.08□□□□□ -0.48
VIM-206ENST00000487938 Q6JHZ5 121 aa12.07□□□□□ -0.48
VIM-206ENST00000487938 RETNQ9HD89 108 aa12.07□□□□□ -0.48
VIM-206ENST00000487938 XAGE1AQ9HD64 81 aa12.07□□□□□ -0.48
VIM-206ENST00000487938 A0A087WVE0 104 aa12.06□□□□□ -0.48
VIM-206ENST00000487938 C3orf22Q8N5N4 141 aa12.06□□□□□ -0.48
VIM-206ENST00000487938 C6orf48Q9UBA6 75 aa12.06□□□□□ -0.48
VIM-206ENST00000487938 WFDC10BQ8IUB3 73 aa12.05□□□□□ -0.48
VIM-206ENST00000487938 hADV29S1A0JD25 119 aa12.04□□□□□ -0.48
VIM-206ENST00000487938 HIST1H4AP62805 103 aaKnown RBP12.04□□□□□ -0.48
VIM-206ENST00000487938 OXLD1Q5BKU9 147 aa12.04□□□□□ -0.48
VIM-206ENST00000487938 C9orf153Q5TBE3 101 aa12.04□□□□□ -0.48
VIM-206ENST00000487938 IGLV6-57P01721 117 aa12.03□□□□□ -0.48
VIM-206ENST00000487938 HIGD2BQ4VC39 106 aa12.03□□□□□ -0.48
VIM-206ENST00000487938 WIPF1O43516 503 aa12.03□□□□□ -0.48
VIM-206ENST00000487938 UQCRQO14949 82 aa12.02□□□□□ -0.49
VIM-206ENST00000487938 KPRPQ5T749 579 aaPredicted RBP12.02□□□□□ -0.49
VIM-206ENST00000487938 TRBV10-3A0A0K0K1G6 114 aa12.01□□□□□ -0.49
VIM-206ENST00000487938 MUC7Q8TAX7 377 aa12.01□□□□□ -0.49
VIM-206ENST00000487938 C2orf48Q96LS8 159 aa12□□□□□ -0.49
VIM-206ENST00000487938 GVQW2A0A096LPI5 108 aaPredicted RBP12□□□□□ -0.49
VIM-206ENST00000487938 ATOX1O00244 68 aa11.99□□□□□ -0.49
VIM-206ENST00000487938 COX7CP15954 63 aa11.99□□□□□ -0.49
VIM-206ENST00000487938 LAMTOR3Q9UHA4 124 aa11.99□□□□□ -0.49
VIM-206ENST00000487938 ZNF561-AS1K7EIQ3 104 aa11.99□□□□□ -0.49
VIM-206ENST00000487938 KRTAP10-11P60412 298 aa11.99□□□□□ -0.49
VIM-206ENST00000487938 Q6ZTC4 211 aa11.99□□□□□ -0.49
VIM-206ENST00000487938 PKD1L1Q8TDX9 2849 aa11.98□□□□□ -0.49
VIM-206ENST00000487938 RBM3P98179 157 aaKnown RBP11.98□□□□□ -0.49
VIM-206ENST00000487938 SMIM20Q8N5G0 67 aa11.98□□□□□ -0.49
VIM-206ENST00000487938 Q6ZQY7 126 aa11.97□□□□□ -0.49
VIM-206ENST00000487938 CAMK2N2Q96S95 79 aa11.97□□□□□ -0.49
VIM-206ENST00000487938 TRAV23DV6A0A075B6W5 121 aa11.97□□□□□ -0.49
VIM-206ENST00000487938 KRTAP26-1Q6PEX3 210 aa11.95□□□□□ -0.5
VIM-206ENST00000487938 ANK2Q01484 3957 aa11.94□□□□□ -0.5
VIM-206ENST00000487938 M0R2N4 97 aa11.94□□□□□ -0.5
VIM-206ENST00000487938 ESRGQ1W209 222 aa11.94□□□□□ -0.5
VIM-206ENST00000487938 Q6ZQT0 140 aa11.94□□□□□ -0.5
VIM-206ENST00000487938 Q6ZRU5 148 aa11.94□□□□□ -0.5
VIM-206ENST00000487938 DIRC1Q969H9 104 aa11.94□□□□□ -0.5
VIM-206ENST00000487938 USP17L23D6RBM5 183 aa11.93□□□□□ -0.5
VIM-206ENST00000487938 FAM19A1Q7Z5A9 133 aa11.93□□□□□ -0.5
VIM-206ENST00000487938 ZNF73O43830 326 aaPredicted RBP11.92□□□□□ -0.5
VIM-206ENST00000487938 UBL5Q9BZL1 73 aa11.92□□□□□ -0.5
VIM-206ENST00000487938 F8P00451 2351 aa11.92□□□□□ -0.5
VIM-206ENST00000487938 H3BNG1 76 aa11.91□□□□□ -0.5
VIM-206ENST00000487938 C15orf56Q8N910 161 aa11.91□□□□□ -0.5
VIM-206ENST00000487938 VPREB1P12018 145 aa11.9□□□□□ -0.5
VIM-206ENST00000487938 COX7BP24311 80 aa11.9□□□□□ -0.5
VIM-206ENST00000487938 DSCR8Q96T75 97 aa11.89□□□□□ -0.51
VIM-206ENST00000487938 LOC110117498A0A087WWA1 95 aa11.89□□□□□ -0.51
VIM-206ENST00000487938 EGFEM1PQ0D2K5 195 aa11.89□□□□□ -0.51
VIM-206ENST00000487938 CYSTM1Q9H1C7 97 aa11.89□□□□□ -0.51
VIM-206ENST00000487938 CRYGAP11844 174 aa11.88□□□□□ -0.51
VIM-206ENST00000487938 KRTAP24-1Q3LI83 254 aa11.88□□□□□ -0.51
VIM-206ENST00000487938 SERP2Q8N6R1 65 aa11.88□□□□□ -0.51
VIM-206ENST00000487938 IGKV2D-24A0A075B6R9 120 aa11.87□□□□□ -0.51
VIM-206ENST00000487938 ATP5EP2Q5VTU8 51 aa11.87□□□□□ -0.51
VIM-206ENST00000487938 C1orf43Q9BWL3 253 aa11.86□□□□□ -0.51
VIM-206ENST00000487938 ELOF1P60002 83 aaKnown RBP11.86□□□□□ -0.51
VIM-206ENST00000487938 NDUFC2-KCTD14E9PQ53 114 aa11.85□□□□□ -0.51
VIM-206ENST00000487938 M0R378 163 aa11.85□□□□□ -0.51
VIM-206ENST00000487938 TENM3Q9P273 2699 aa11.85□□□□□ -0.51
VIM-206ENST00000487938 CMYA5Q8N3K9 4069 aa11.85□□□□□ -0.51
VIM-206ENST00000487938 Q6ZRP5 223 aa11.85□□□□□ -0.51
VIM-206ENST00000487938 DEFB131BA0A096LNP1 70 aa11.84□□□□□ -0.51
VIM-206ENST00000487938 UPK3BQ9BT76 320 aa11.84□□□□□ -0.51
VIM-206ENST00000487938 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.84□□□□□ -0.51
VIM-206ENST00000487938 HAMPP81172 84 aa11.83□□□□□ -0.52
VIM-206ENST00000487938 GHRHP01286 108 aa11.83□□□□□ -0.52
VIM-206ENST00000487938 Q6ZVQ6 151 aa11.82□□□□□ -0.52
VIM-206ENST00000487938 FLNBO75369 2602 aaKnown RBP11.82□□□□□ -0.52
VIM-206ENST00000487938 C11orf45Q8TAV5 145 aa11.81□□□□□ -0.52
VIM-206ENST00000487938 H3BQ85 93 aa11.8□□□□□ -0.52
VIM-206ENST00000487938 LINC01547P58512 204 aaPredicted RBP11.8□□□□□ -0.52
VIM-206ENST00000487938 LINC01556Q5JQF7 62 aa11.8□□□□□ -0.52
VIM-206ENST00000487938 TRBV7-6A0A0J9YX20 115 aa11.8□□□□□ -0.52
VIM-206ENST00000487938 PDE6GP18545 87 aa11.79□□□□□ -0.52
VIM-206ENST00000487938 SYCNQ0VAF6 134 aa11.79□□□□□ -0.52
VIM-206ENST00000487938 FBN1P35555 2871 aaKnown RBP11.78□□□□□ -0.52
VIM-206ENST00000487938 LINC00528Q8N1L1 170 aa11.78□□□□□ -0.52
VIM-206ENST00000487938 TRBV7-4A0A0J9YYF1 115 aa11.77□□□□□ -0.53
VIM-206ENST00000487938 LOC107984640A0A0U1RRK4 108 aa11.75□□□□□ -0.53
VIM-206ENST00000487938 STAB1Q9NY15 2570 aa11.75□□□□□ -0.53
VIM-206ENST00000487938 SERTAD4-AS1Q5TG53 156 aa11.75□□□□□ -0.53
VIM-206ENST00000487938 SCXQ7RTU7 201 aa11.74□□□□□ -0.53
VIM-206ENST00000487938 NKAPP1Q8N9T2 125 aa11.72□□□□□ -0.53
VIM-206ENST00000487938 PRB2P02812 416 aaPredicted RBP11.71□□□□□ -0.54
VIM-206ENST00000487938 DNAH10OSP0CZ25 163 aa11.71□□□□□ -0.54
VIM-206ENST00000487938 DEFB105AQ8NG35 78 aa11.71□□□□□ -0.54
VIM-206ENST00000487938 C7orf33Q8WU49 177 aa11.71□□□□□ -0.54
VIM-206ENST00000487938 TRAV10A0A0B4J240 114 aa11.7□□□□□ -0.54
VIM-206ENST00000487938 CASC10Q5T4H9 136 aa11.7□□□□□ -0.54
VIM-206ENST00000487938 F8WDY8 70 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms