RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 Q8NDZ9 215 aa14.38□□□□□ -0.11
LIME1-206ENST00000487026 COX17Q14061 63 aa14.36□□□□□ -0.11
LIME1-206ENST00000487026 FAM19A1Q7Z5A9 133 aa14.36□□□□□ -0.11
LIME1-206ENST00000487026 TMEM126AQ9H061 195 aa14.36□□□□□ -0.11
LIME1-206ENST00000487026 MUC2Q02817 5179 aa14.36□□□□□ -0.11
LIME1-206ENST00000487026 RPL24P83731 157 aaKnown RBP14.35□□□□□ -0.11
LIME1-206ENST00000487026 FAM229BQ4G0N7 80 aa14.33□□□□□ -0.12
LIME1-206ENST00000487026 CHTOPQ9Y3Y2 248 aaKnown RBP14.33□□□□□ -0.12
LIME1-206ENST00000487026 M0R378 163 aa14.32□□□□□ -0.12
LIME1-206ENST00000487026 A0A0U1RRA0 63 aa14.3□□□□□ -0.12
LIME1-206ENST00000487026 LINC00158P58513 81 aa14.3□□□□□ -0.12
LIME1-206ENST00000487026 RETNLBQ9BQ08 111 aa14.29□□□□□ -0.12
LIME1-206ENST00000487026 IGKV2D-26A0A0A0MRZ7 120 aa14.28□□□□□ -0.12
LIME1-206ENST00000487026 LINC00304Q8N9R0 145 aa14.28□□□□□ -0.12
LIME1-206ENST00000487026 CHCHD1Q96BP2 118 aaKnown RBP14.28□□□□□ -0.12
LIME1-206ENST00000487026 SFTA2Q6UW10 78 aa14.27□□□□□ -0.13
LIME1-206ENST00000487026 TMEM223A0PJW6 202 aa14.26□□□□□ -0.13
LIME1-206ENST00000487026 PLEKHB2Q96CS7 222 aa14.26□□□□□ -0.13
LIME1-206ENST00000487026 IFI27L1Q96BM0 104 aa14.24□□□□□ -0.13
LIME1-206ENST00000487026 HIGD2AQ9BW72 106 aa14.23□□□□□ -0.13
LIME1-206ENST00000487026 TRAV12-1A0A0B4J245 112 aa14.22□□□□□ -0.13
LIME1-206ENST00000487026 SMIM13P0DJ93 91 aa14.22□□□□□ -0.13
LIME1-206ENST00000487026 HSBP1O75506 76 aa14.21□□□□□ -0.13
LIME1-206ENST00000487026 C3orf22Q8N5N4 141 aa14.21□□□□□ -0.13
LIME1-206ENST00000487026 HIST1H2BKO60814 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BJP06899 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BOP23527 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BBP33778 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BDP58876 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BCP62807 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST2H2BEQ16778 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BHQ93079 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BNQ99877 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 HIST1H2BMQ99879 126 aa14.19□□□□□ -0.14
LIME1-206ENST00000487026 FAM19A2Q8N3H0 131 aa14.18□□□□□ -0.14
LIME1-206ENST00000487026 MEIG1Q5JSS6 88 aa14.17□□□□□ -0.14
LIME1-206ENST00000487026 BOD1L2Q8IYS8 172 aa14.17□□□□□ -0.14
LIME1-206ENST00000487026 SERF1AO75920 110 aa14.16□□□□□ -0.14
LIME1-206ENST00000487026 NCR3O14931 201 aa14.15□□□□□ -0.14
LIME1-206ENST00000487026 MIR7-3HGQ8N6C7 128 aa14.15□□□□□ -0.14
LIME1-206ENST00000487026 SPRR4Q96PI1 79 aa14.14□□□□□ -0.15
LIME1-206ENST00000487026 H0Y8G0 127 aa14.13□□□□□ -0.15
LIME1-206ENST00000487026 IGLV7-46A0A075B6I9 117 aa14.11□□□□□ -0.15
LIME1-206ENST00000487026 NDUFA12Q9UI09 145 aa14.11□□□□□ -0.15
LIME1-206ENST00000487026 PRYO14603 147 aa14.1□□□□□ -0.15
LIME1-206ENST00000487026 HERV-K104P63124 156 aa14.1□□□□□ -0.15
LIME1-206ENST00000487026 HSPB8Q9UJY1 196 aa14.09□□□□□ -0.15
LIME1-206ENST00000487026 LEPROTL1O95214 131 aa14.08□□□□□ -0.16
LIME1-206ENST00000487026 COA6Q5JTJ3 125 aaKnown RBP14.08□□□□□ -0.16
LIME1-206ENST00000487026 CDIP1Q9H305 208 aa14.08□□□□□ -0.16
LIME1-206ENST00000487026 KCNQ1DNQ9H478 68 aa14.08□□□□□ -0.16
LIME1-206ENST00000487026 MUC17Q685J3 4493 aa14.07□□□□□ -0.16
LIME1-206ENST00000487026 A0A0U1RQV1 116 aa14.07□□□□□ -0.16
LIME1-206ENST00000487026 MYMXA0A1B0GTQ4 84 aa14.07□□□□□ -0.16
LIME1-206ENST00000487026 SMCR5Q8TEV8 140 aa14.07□□□□□ -0.16
LIME1-206ENST00000487026 TRBV10-3A0A0K0K1G6 114 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 SPRR1AP35321 89 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 LINC00310P59036 64 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 TSPEAR-AS2P59090 65 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 CTAG1AP78358 180 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 TPRXLQ17RH7 258 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 LINC00337Q8N6G1 96 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 PPDPFQ9H3Y8 114 aa14.06□□□□□ -0.16
LIME1-206ENST00000487026 S100A6P06703 90 aa14.05□□□□□ -0.16
LIME1-206ENST00000487026 DAND5Q8N907 189 aa14.05□□□□□ -0.16
LIME1-206ENST00000487026 ZNF706Q9Y5V0 76 aaPredicted RBP14.05□□□□□ -0.16
LIME1-206ENST00000487026 ETDCA0A1B0GVM5 59 aa14.04□□□□□ -0.16
LIME1-206ENST00000487026 LINC00587B1AMM8 73 aa14.04□□□□□ -0.16
LIME1-206ENST00000487026 KRTAP4-16G5E9R7 235 aaPredicted RBP14.04□□□□□ -0.16
LIME1-206ENST00000487026 SPAG11AQ6PDA7 123 aa14.03□□□□□ -0.16
LIME1-206ENST00000487026 MAP1LC3CQ9BXW4 147 aa14.03□□□□□ -0.16
LIME1-206ENST00000487026 LEPROTO15243 131 aa14.01□□□□□ -0.17
LIME1-206ENST00000487026 FABP4P15090 132 aa14.01□□□□□ -0.17
LIME1-206ENST00000487026 C4orf48Q5BLP8 95 aa14.01□□□□□ -0.17
LIME1-206ENST00000487026 Q8NBF4 154 aa14.01□□□□□ -0.17
LIME1-206ENST00000487026 FAT4Q6V0I7 4981 aa14.01□□□□□ -0.17
LIME1-206ENST00000487026 PMCHL2Q9BQD1 86 aa13.99□□□□□ -0.17
LIME1-206ENST00000487026 B5MCH6 92 aa13.96□□□□□ -0.17
LIME1-206ENST00000487026 J3QQQ9 107 aa13.96□□□□□ -0.17
LIME1-206ENST00000487026 PLNP26678 52 aa13.96□□□□□ -0.17
LIME1-206ENST00000487026 S100A2P29034 98 aa13.96□□□□□ -0.17
LIME1-206ENST00000487026 GAGE2AQ6NT46 116 aa13.96□□□□□ -0.17
LIME1-206ENST00000487026 LOC107984156A0A0G2JMH3 177 aa13.95□□□□□ -0.18
LIME1-206ENST00000487026 ERC2-IT1O76042 136 aa13.95□□□□□ -0.18
LIME1-206ENST00000487026 DDTP30046 118 aa13.95□□□□□ -0.18
LIME1-206ENST00000487026 ARL17AQ8IVW1 177 aa13.95□□□□□ -0.18
LIME1-206ENST00000487026 DPM2O94777 84 aa13.94□□□□□ -0.18
LIME1-206ENST00000487026 S100A12P80511 92 aa13.94□□□□□ -0.18
LIME1-206ENST00000487026 LINC00483Q53H64 154 aa13.93□□□□□ -0.18
LIME1-206ENST00000487026 TRBV10-2A0A0K0K1G8 114 aa13.91□□□□□ -0.18
LIME1-206ENST00000487026 HERVK_113P61574 105 aa13.91□□□□□ -0.18
LIME1-206ENST00000487026 Q9BRP9 147 aa13.91□□□□□ -0.18
LIME1-206ENST00000487026 IGKCP01834 107 aa13.9□□□□□ -0.18
LIME1-206ENST00000487026 LGALS3P17931 250 aaKnown RBP13.9□□□□□ -0.18
LIME1-206ENST00000487026 IGLV9-49A0A0B4J1Y8 123 aa13.89□□□□□ -0.19
LIME1-206ENST00000487026 NMUP48645 174 aa13.89□□□□□ -0.19
LIME1-206ENST00000487026 LCE2AQ5TA79 106 aaPredicted RBP13.89□□□□□ -0.19
LIME1-206ENST00000487026 FP248Q71RG6 208 aaPredicted RBP13.89□□□□□ -0.19
LIME1-206ENST00000487026 MIEN1Q9BRT3 115 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms