RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SACSQ9NZJ4 4579 aa5.35□□□□□ -1.55
USP4-211ENST00000485450 IGHV4-30-4P0DP06 118 aa5.35□□□□□ -1.55
USP4-211ENST00000485450 ZNF625Q96I27 306 aaPredicted RBP5.35□□□□□ -1.55
USP4-211ENST00000485450 DEFB1P60022 68 aa5.35□□□□□ -1.55
USP4-211ENST00000485450 Q9H8V8 135 aa5.35□□□□□ -1.55
USP4-211ENST00000485450 A0A087WYN8 130 aa5.34□□□□□ -1.55
USP4-211ENST00000485450 TRAV13-2A0A0B4J235 113 aa5.34□□□□□ -1.55
USP4-211ENST00000485450 IGLV5-39A0A0G2JS06 123 aa5.34□□□□□ -1.55
USP4-211ENST00000485450 LINC00612Q8N6U2 182 aa5.34□□□□□ -1.55
USP4-211ENST00000485450 RBM3P98179 157 aaKnown RBP5.34□□□□□ -1.55
USP4-211ENST00000485450 RNASE13Q5GAN3 156 aaKnown RBP5.34□□□□□ -1.55
USP4-211ENST00000485450 MPLKIPQ8TAP9 179 aa5.34□□□□□ -1.55
USP4-211ENST00000485450 CDKN2A-AS1Q9UH64 79 aa5.34□□□□□ -1.55
USP4-211ENST00000485450 NBEAL1Q6ZS30 2694 aa5.34□□□□□ -1.56
USP4-211ENST00000485450 F8WEM9 126 aa5.34□□□□□ -1.56
USP4-211ENST00000485450 IGHV3-16A0A0C4DH30 117 aa5.33□□□□□ -1.56
USP4-211ENST00000485450 ATP5EP56381 51 aaPredicted RBP5.33□□□□□ -1.56
USP4-211ENST00000485450 F6UB75 175 aa5.33□□□□□ -1.56
USP4-211ENST00000485450 H0YGX0 51 aa5.33□□□□□ -1.56
USP4-211ENST00000485450 NCR3O14931 201 aa5.33□□□□□ -1.56
USP4-211ENST00000485450 ENHOQ6UWT2 76 aa5.33□□□□□ -1.56
USP4-211ENST00000485450 SNURFQ9Y675 71 aa5.33□□□□□ -1.56
USP4-211ENST00000485450 RYR2Q92736 4967 aa5.32□□□□□ -1.56
USP4-211ENST00000485450 NDUFC1O43677 76 aa5.32□□□□□ -1.56
USP4-211ENST00000485450 DNAH2Q9P225 4427 aa5.31□□□□□ -1.56
USP4-211ENST00000485450 CRPP02741 224 aa5.31□□□□□ -1.56
USP4-211ENST00000485450 CHCHD7Q9BUK0 85 aa5.31□□□□□ -1.56
USP4-211ENST00000485450 A0A087WZ39 114 aa5.31□□□□□ -1.56
USP4-211ENST00000485450 LINC00337Q8N6G1 96 aa5.31□□□□□ -1.56
USP4-211ENST00000485450 DYNLRB2Q8TF09 96 aa5.31□□□□□ -1.56
USP4-211ENST00000485450 IGKV2-29A2NJV5 120 aaPredicted RBP5.3□□□□□ -1.56
USP4-211ENST00000485450 MIR7-3HGQ8N6C7 128 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 SMIM11BQ8TCY0 68 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 H3BS24 57 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 PIK3CD-AS1Q5SR53 167 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 Q8NAQ8 132 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 IGKV2-28A0A075B6P5 120 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 IGKV2D-28P01615 120 aa5.3□□□□□ -1.56
USP4-211ENST00000485450 LECT2O14960 151 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 APOC4P55056 127 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 COX6A2Q02221 97 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 FAM19A3Q7Z5A8 133 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 ORMDL1Q9P0S3 153 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 FAT2Q9NYQ8 4349 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 TRAV10A0A0B4J240 114 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 SMIM1B2RUZ4 78 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 JMJD7-PLA2G4BH0Y9G9 81 aa5.29□□□□□ -1.56
USP4-211ENST00000485450 UBL5Q9BZL1 73 aa5.28□□□□□ -1.56
USP4-211ENST00000485450 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.28□□□□□ -1.56
USP4-211ENST00000485450 TRBV7-4A0A0J9YYF1 115 aa5.28□□□□□ -1.56
USP4-211ENST00000485450 Q6ZRP5 223 aa5.28□□□□□ -1.56
USP4-211ENST00000485450 Q6ZTC4 211 aa5.28□□□□□ -1.56
USP4-211ENST00000485450 LINC00242Q5T6M2 205 aa5.27□□□□□ -1.57
USP4-211ENST00000485450 LINC00167Q96N53 147 aa5.27□□□□□ -1.57
USP4-211ENST00000485450 HECTD4Q9Y4D8 3996 aa5.27□□□□□ -1.57
USP4-211ENST00000485450 LINC00588Q9Y4M8 146 aa5.27□□□□□ -1.57
USP4-211ENST00000485450 MIFP14174 115 aa5.27□□□□□ -1.57
USP4-211ENST00000485450 IGHV3OR16-12A0A075B7B8 117 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 IGHV1OR15-1A0A075B7D0 117 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 LINC00528Q8N1L1 170 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 C11orf72Q8NBR9 251 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 SND1-IT1Q9HBX3 110 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 DNAH10Q8IVF4 4471 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 A0A0A0MQY5 61 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 SLPIP03973 132 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 RPL36AP83881 106 aaKnown RBP5.26□□□□□ -1.57
USP4-211ENST00000485450 RPL36ALQ969Q0 106 aaKnown RBP5.26□□□□□ -1.57
USP4-211ENST00000485450 WFDC10AQ9H1F0 79 aa5.26□□□□□ -1.57
USP4-211ENST00000485450 C8orf87E5RJ46 101 aa5.25□□□□□ -1.57
USP4-211ENST00000485450 GYPEP15421 78 aa5.25□□□□□ -1.57
USP4-211ENST00000485450 LAMTOR3Q9UHA4 124 aa5.25□□□□□ -1.57
USP4-211ENST00000485450 JMJD1CQ15652 2540 aa5.25□□□□□ -1.57
USP4-211ENST00000485450 M0R378 163 aa5.25□□□□□ -1.57
USP4-211ENST00000485450 MRPL55Q7Z7F7 128 aaKnown RBP5.25□□□□□ -1.57
USP4-211ENST00000485450 HYDINQ4G0P3 5121 aa5.25□□□□□ -1.57
USP4-211ENST00000485450 DEFB131AP59861 70 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 KTN1-AS1Q86SY8 53 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 PKD1P98161 4303 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 IGHV3-38A0A0C4DH36 116 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 C3orf84H3BNL1 204 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 Q1T7F1 81 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 ESRGQ1W209 222 aa5.24□□□□□ -1.57
USP4-211ENST00000485450 TMEM256-PLSCR3K7ERE1 68 aa5.23□□□□□ -1.57
USP4-211ENST00000485450 KMT2CQ8NEZ4 4911 aaKnown RBP5.23□□□□□ -1.57
USP4-211ENST00000485450 IGKV3-7A0A075B6H7 116 aa5.23□□□□□ -1.57
USP4-211ENST00000485450 IGHV3-73A0A0B4J1V6 119 aa5.23□□□□□ -1.57
USP4-211ENST00000485450 LINC01547P58512 204 aaPredicted RBP5.23□□□□□ -1.57
USP4-211ENST00000485450 RYR3Q15413 4870 aa5.23□□□□□ -1.57
USP4-211ENST00000485450 H3BNG1 76 aa5.23□□□□□ -1.57
USP4-211ENST00000485450 WWC2-AS2Q96NR7 200 aa5.22□□□□□ -1.57
USP4-211ENST00000485450 ERC2-IT1O76042 136 aa5.22□□□□□ -1.57
USP4-211ENST00000485450 CCL18P55774 89 aa5.22□□□□□ -1.57
USP4-211ENST00000485450 DAD1P61803 113 aa5.22□□□□□ -1.57
USP4-211ENST00000485450 CXCL6P80162 114 aa5.22□□□□□ -1.57
USP4-211ENST00000485450 Q6ZSN1 163 aa5.22□□□□□ -1.57
USP4-211ENST00000485450 Q6ZTI0 123 aa5.21□□□□□ -1.58
USP4-211ENST00000485450 KMT2AQ03164 3969 aa5.21□□□□□ -1.58
USP4-211ENST00000485450 DNAH11Q96DT5 4516 aa5.21□□□□□ -1.58
USP4-211ENST00000485450 PRR26Q8N8Z3 221 aa5.21□□□□□ -1.58
USP4-211ENST00000485450 LYRM9A8MSI8 78 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms