RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 RPL28P46779 137 aaKnown RBP9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BDP58876 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BCP62807 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST2H2BEQ16778 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 PRR26Q8N8Z3 221 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BHQ93079 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BNQ99877 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BMQ99879 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 NDUFA12Q9UI09 145 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 A0A0U1RRA0 63 aa9.44□□□□□ -0.9
CCDC28B-205ENST00000483009 DPM2O94777 84 aa9.44□□□□□ -0.9
CCDC28B-205ENST00000483009 HERV-K104P63124 156 aa9.44□□□□□ -0.9
CCDC28B-205ENST00000483009 IGLV1-50A0A075B6I6 118 aa9.43□□□□□ -0.9
CCDC28B-205ENST00000483009 MEIG1Q5JSS6 88 aa9.43□□□□□ -0.9
CCDC28B-205ENST00000483009 Q8NDZ9 215 aa9.43□□□□□ -0.9
CCDC28B-205ENST00000483009 PMCHL2Q9BQD1 86 aa9.43□□□□□ -0.9
CCDC28B-205ENST00000483009 IGKV2-28A0A075B6P5 120 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 MYMXA0A1B0GTQ4 84 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 LEPROTO15243 131 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 ATP6V1G1O75348 118 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 IGKV2D-28P01615 120 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 SMIM13P0DJ93 91 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 PLEKHB2Q96CS7 222 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 MAP1LC3CQ9BXW4 147 aa9.42□□□□□ -0.9
CCDC28B-205ENST00000483009 LINC00587B1AMM8 73 aa9.41□□□□□ -0.9
CCDC28B-205ENST00000483009 IGKCP01834 107 aa9.41□□□□□ -0.9
CCDC28B-205ENST00000483009 TSPEAR-AS2P59090 65 aa9.41□□□□□ -0.9
CCDC28B-205ENST00000483009 HERVK_113P61574 105 aa9.41□□□□□ -0.9
CCDC28B-205ENST00000483009 UBE2AP49459 152 aa9.4□□□□□ -0.9
CCDC28B-205ENST00000483009 MIR7-3HGQ8N6C7 128 aa9.4□□□□□ -0.9
CCDC28B-205ENST00000483009 J3QQQ9 107 aa9.39□□□□□ -0.91
CCDC28B-205ENST00000483009 KRTAP13-1Q8IUC0 172 aa9.39□□□□□ -0.91
CCDC28B-205ENST00000483009 RPL13AP40429 203 aaKnown RBP9.38□□□□□ -0.91
CCDC28B-205ENST00000483009 TMEM126AQ9H061 195 aa9.38□□□□□ -0.91
CCDC28B-205ENST00000483009 TMEM238C9JI98 176 aa9.37□□□□□ -0.91
CCDC28B-205ENST00000483009 NMUP48645 174 aa9.37□□□□□ -0.91
CCDC28B-205ENST00000483009 BOD1L2Q8IYS8 172 aa9.37□□□□□ -0.91
CCDC28B-205ENST00000483009 SYS1-DBNDD2H3BUS1 97 aa9.36□□□□□ -0.91
CCDC28B-205ENST00000483009 M0R378 163 aa9.36□□□□□ -0.91
CCDC28B-205ENST00000483009 LGALS3P17931 250 aaKnown RBP9.36□□□□□ -0.91
CCDC28B-205ENST00000483009 FAM19A1Q7Z5A9 133 aa9.35□□□□□ -0.91
CCDC28B-205ENST00000483009 PRLHP81277 87 aa9.34□□□□□ -0.91
CCDC28B-205ENST00000483009 COA6Q5JTJ3 125 aaKnown RBP9.34□□□□□ -0.91
CCDC28B-205ENST00000483009 LINC01545Q5VT33 79 aa9.33□□□□□ -0.92
CCDC28B-205ENST00000483009 PET117Q6UWS5 81 aa9.33□□□□□ -0.92
CCDC28B-205ENST00000483009 IGKV2D-26A0A0A0MRZ7 120 aa9.32□□□□□ -0.92
CCDC28B-205ENST00000483009 E9PLD3 99 aa9.32□□□□□ -0.92
CCDC28B-205ENST00000483009 NCR3O14931 201 aa9.32□□□□□ -0.92
CCDC28B-205ENST00000483009 DAND5Q8N907 189 aa9.32□□□□□ -0.92
CCDC28B-205ENST00000483009 LOC107984156A0A0G2JMH3 177 aa9.31□□□□□ -0.92
CCDC28B-205ENST00000483009 ARL17AQ8IVW1 177 aa9.31□□□□□ -0.92
CCDC28B-205ENST00000483009 A0A087X002 238 aa9.3□□□□□ -0.92
CCDC28B-205ENST00000483009 PRYO14603 147 aa9.3□□□□□ -0.92
CCDC28B-205ENST00000483009 CRYGAP11844 174 aa9.3□□□□□ -0.92
CCDC28B-205ENST00000483009 C3orf79P0CE67 100 aa9.29□□□□□ -0.92
CCDC28B-205ENST00000483009 LRP2P98164 4655 aa9.28□□□□□ -0.92
CCDC28B-205ENST00000483009 A0A0J9YXY3 114 aa9.28□□□□□ -0.92
CCDC28B-205ENST00000483009 MIEN1Q9BRT3 115 aa9.28□□□□□ -0.92
CCDC28B-205ENST00000483009 KCNQ1DNQ9H478 68 aa9.28□□□□□ -0.92
CCDC28B-205ENST00000483009 ANAPC11Q9NYG5 84 aa9.28□□□□□ -0.92
CCDC28B-205ENST00000483009 TRBV10-3A0A0K0K1G6 114 aa9.27□□□□□ -0.93
CCDC28B-205ENST00000483009 FAM229BQ4G0N7 80 aa9.27□□□□□ -0.93
CCDC28B-205ENST00000483009 HIGD2AQ9BW72 106 aa9.27□□□□□ -0.93
CCDC28B-205ENST00000483009 TRBV10-2A0A0K0K1G8 114 aa9.26□□□□□ -0.93
CCDC28B-205ENST00000483009 SPRR1AP35321 89 aa9.26□□□□□ -0.93
CCDC28B-205ENST00000483009 KRTDAPP60985 99 aa9.26□□□□□ -0.93
CCDC28B-205ENST00000483009 TYMSOSQ8TAI1 123 aa9.26□□□□□ -0.93
CCDC28B-205ENST00000483009 UBR4Q5T4S7 5183 aa9.26□□□□□ -0.93
CCDC28B-205ENST00000483009 LINC00337Q8N6G1 96 aa9.25□□□□□ -0.93
CCDC28B-205ENST00000483009 SPANXB1Q9NS25 103 aaPredicted RBP9.25□□□□□ -0.93
CCDC28B-205ENST00000483009 NDUFC2O95298 119 aa9.24□□□□□ -0.93
CCDC28B-205ENST00000483009 S100A1P23297 94 aa9.24□□□□□ -0.93
CCDC28B-205ENST00000483009 S100A12P80511 92 aa9.24□□□□□ -0.93
CCDC28B-205ENST00000483009 ADAMTSL4-AS1Q5T5F5 129 aa9.24□□□□□ -0.93
CCDC28B-205ENST00000483009 ETDCA0A1B0GVM5 59 aa9.23□□□□□ -0.93
CCDC28B-205ENST00000483009 C20orf202A1L168 122 aa9.23□□□□□ -0.93
CCDC28B-205ENST00000483009 DDTP30046 118 aa9.23□□□□□ -0.93
CCDC28B-205ENST00000483009 KRTAP13-2Q52LG2 175 aa9.23□□□□□ -0.93
CCDC28B-205ENST00000483009 SOSTDC1Q6X4U4 206 aa9.23□□□□□ -0.93
CCDC28B-205ENST00000483009 KRTAP4-16G5E9R7 235 aaPredicted RBP9.22□□□□□ -0.93
CCDC28B-205ENST00000483009 ZNF815PA8K554 130 aa9.21□□□□□ -0.94
CCDC28B-205ENST00000483009 EIF4EBP3O60516 100 aaPredicted RBP9.21□□□□□ -0.94
CCDC28B-205ENST00000483009 TIMM17BO60830 172 aa9.21□□□□□ -0.94
CCDC28B-205ENST00000483009 NPC2P61916 151 aa9.21□□□□□ -0.94
CCDC28B-205ENST00000483009 LITAFQ99732 161 aa9.21□□□□□ -0.94
CCDC28B-205ENST00000483009 SPRR4Q96PI1 79 aa9.2□□□□□ -0.94
CCDC28B-205ENST00000483009 ZNF706Q9Y5V0 76 aaPredicted RBP9.2□□□□□ -0.94
CCDC28B-205ENST00000483009 IGLV6-57P01721 117 aa9.19□□□□□ -0.94
CCDC28B-205ENST00000483009 S100A7L2Q5SY68 101 aa9.19□□□□□ -0.94
CCDC28B-205ENST00000483009 TTTY13Q9BZ97 58 aa9.19□□□□□ -0.94
CCDC28B-205ENST00000483009 TSPAN13O95857 204 aa9.18□□□□□ -0.94
CCDC28B-205ENST00000483009 LINC00308Q8TCZ7 52 aa9.18□□□□□ -0.94
CCDC28B-205ENST00000483009 B5MCH6 92 aa9.17□□□□□ -0.94
CCDC28B-205ENST00000483009 AKR1D1P51857 326 aa9.17□□□□□ -0.94
CCDC28B-205ENST00000483009 SMCR5Q8TEV8 140 aa9.17□□□□□ -0.94
CCDC28B-205ENST00000483009 ANKRD39Q53RE8 183 aa9.16□□□□□ -0.94
CCDC28B-205ENST00000483009 LINC00304Q8N9R0 145 aa9.16□□□□□ -0.94
CCDC28B-205ENST00000483009 SPANXCQ9NY87 97 aa9.16□□□□□ -0.94
CCDC28B-205ENST00000483009 TRAV23DV6A0A075B6W5 121 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms