RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 PDZD11Q5EBL8 140 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 PAPPA-AS1Q5QFB9 102 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 C9orf153Q5TBE3 101 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 HRCT1Q6UXD1 115 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 ORMDL3Q8N138 153 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 SND1-IT1Q9HBX3 110 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 TMA7Q9Y2S6 64 aaKnown RBP4.15□□□□□ -1.75
USP54-213ENST00000481991 ETDCA0A1B0GVM5 59 aa4.14□□□□□ -1.75
USP54-213ENST00000481991 SMIM1B2RUZ4 78 aa4.14□□□□□ -1.75
USP54-213ENST00000481991 LCE1DQ5T752 114 aa4.14□□□□□ -1.75
USP54-213ENST00000481991 ZNF625Q96I27 306 aaPredicted RBP4.14□□□□□ -1.75
USP54-213ENST00000481991 KRTAP4-7Q9BYR0 210 aa4.14□□□□□ -1.75
USP54-213ENST00000481991 MAP1LC3AQ9H492 121 aa4.14□□□□□ -1.75
USP54-213ENST00000481991 RPS29P62273 56 aaKnown RBP4.13□□□□□ -1.75
USP54-213ENST00000481991 ADIRFQ15847 76 aa4.13□□□□□ -1.75
USP54-213ENST00000481991 SMIM27A0A1W2PRY6 76 aa4.12□□□□□ -1.75
USP54-213ENST00000481991 IGIPA6NJ69 53 aa4.12□□□□□ -1.75
USP54-213ENST00000481991 IGLV6-57P01721 117 aa4.12□□□□□ -1.75
USP54-213ENST00000481991 CFC1P0CG37 223 aa4.12□□□□□ -1.75
USP54-213ENST00000481991 ORMDL2Q53FV1 153 aa4.12□□□□□ -1.75
USP54-213ENST00000481991 FAM19A3Q7Z5A8 133 aa4.12□□□□□ -1.75
USP54-213ENST00000481991 A0A0U1RRA0 63 aa4.11□□□□□ -1.75
USP54-213ENST00000481991 LINC00158P58513 81 aa4.11□□□□□ -1.75
USP54-213ENST00000481991 BLOC1S1P78537 153 aa4.11□□□□□ -1.75
USP54-213ENST00000481991 Q8N8P6 123 aa4.11□□□□□ -1.75
USP54-213ENST00000481991 SCGB3A1Q96QR1 104 aa4.11□□□□□ -1.75
USP54-213ENST00000481991 ERG28Q9UKR5 140 aa4.11□□□□□ -1.75
USP54-213ENST00000481991 TINCRA0A1B0GVN0 87 aa4.1□□□□□ -1.75
USP54-213ENST00000481991 ATP6V1G1O75348 118 aa4.1□□□□□ -1.75
USP54-213ENST00000481991 RPL23P62829 140 aaKnown RBP4.1□□□□□ -1.75
USP54-213ENST00000481991 Q8NDZ9 215 aa4.1□□□□□ -1.75
USP54-213ENST00000481991 SYNE2Q8WXH0 6885 aaKnown RBP4.09□□□□□ -1.75
USP54-213ENST00000481991 FCGBPQ9Y6R7 5405 aaPredicted RBP4.09□□□□□ -1.75
USP54-213ENST00000481991 H3BRM9 83 aa4.09□□□□□ -1.75
USP54-213ENST00000481991 NCR3O14931 201 aa4.09□□□□□ -1.75
USP54-213ENST00000481991 G0S2P27469 103 aa4.09□□□□□ -1.75
USP54-213ENST00000481991 SLC51BQ86UW2 128 aa4.09□□□□□ -1.75
USP54-213ENST00000481991 ERC2-IT1O76042 136 aa4.08□□□□□ -1.76
USP54-213ENST00000481991 SRP19P09132 144 aaKnown RBP4.08□□□□□ -1.76
USP54-213ENST00000481991 NDUFA6P56556 154 aa4.08□□□□□ -1.76
USP54-213ENST00000481991 S100A12P80511 92 aa4.08□□□□□ -1.76
USP54-213ENST00000481991 RGS21Q2M5E4 152 aa4.08□□□□□ -1.76
USP54-213ENST00000481991 LINC00483Q53H64 154 aa4.08□□□□□ -1.76
USP54-213ENST00000481991 PRSS47A8MTI9 375 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 PRYO14603 147 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 ADCYAP1P18509 176 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 COX17Q14061 63 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 PMVKQ15126 192 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 ALKAL2Q6UX46 152 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 ERASQ7Z444 233 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 TOMM6Q96B49 74 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 LIMD2Q9BT23 127 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 CST9LQ9H4G1 147 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 SSPOA2VEC9 5147 aa4.07□□□□□ -1.76
USP54-213ENST00000481991 USH2AO75445 5202 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 TRAV9-1A0A075B6T8 112 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 A0A1B0GXF2 115 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 BOD1L2Q8IYS8 172 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 NXT2Q9NPJ8 142 aaKnown RBP4.06□□□□□ -1.76
USP54-213ENST00000481991 LINC00846Q9NV44 126 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 NAT8Q9UHE5 227 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 LAMTOR2Q9Y2Q5 125 aa4.06□□□□□ -1.76
USP54-213ENST00000481991 KCNQ1DNQ9H478 68 aa4.05□□□□□ -1.76
USP54-213ENST00000481991 FLGP20930 4061 aaPredicted RBP4.05□□□□□ -1.76
USP54-213ENST00000481991 IGLV5-45A0A087WSX0 123 aa4.04□□□□□ -1.76
USP54-213ENST00000481991 B5MCH6 92 aa4.04□□□□□ -1.76
USP54-213ENST00000481991 H7C2G1 150 aa4.04□□□□□ -1.76
USP54-213ENST00000481991 K7EMI3 77 aa4.04□□□□□ -1.76
USP54-213ENST00000481991 RPL37P61927 97 aaKnown RBP4.04□□□□□ -1.76
USP54-213ENST00000481991 KRTAP9-8Q9BYQ0 159 aa4.04□□□□□ -1.76
USP54-213ENST00000481991 KRTAP4-9Q9BYQ8 210 aa4.04□□□□□ -1.76
USP54-213ENST00000481991 TRBV10-3A0A0K0K1G6 114 aa4.03□□□□□ -1.76
USP54-213ENST00000481991 MACF1Q9UPN3 7388 aaKnown RBP4.03□□□□□ -1.76
USP54-213ENST00000481991 SPRR1AP35321 89 aa4.02□□□□□ -1.77
USP54-213ENST00000481991 KIAA1644Q3SXP7 199 aa4.02□□□□□ -1.77
USP54-213ENST00000481991 MEIG1Q5JSS6 88 aa4.02□□□□□ -1.77
USP54-213ENST00000481991 ATP5L2Q7Z4Y8 100 aa4.02□□□□□ -1.77
USP54-213ENST00000481991 ST20-AS1Q8NBB2 130 aa4.02□□□□□ -1.77
USP54-213ENST00000481991 SMIM13P0DJ93 91 aa4.01□□□□□ -1.77
USP54-213ENST00000481991 TMEM170BQ5T4T1 132 aa4.01□□□□□ -1.77
USP54-213ENST00000481991 Q9BRP9 147 aa4.01□□□□□ -1.77
USP54-213ENST00000481991 IGLV5-39A0A0G2JS06 123 aa4□□□□□ -1.77
USP54-213ENST00000481991 C20orf202A1L168 122 aa4□□□□□ -1.77
USP54-213ENST00000481991 KRTAP10-10P60014 251 aa4□□□□□ -1.77
USP54-213ENST00000481991 JOSD1Q15040 202 aaPredicted RBP4□□□□□ -1.77
USP54-213ENST00000481991 ATP11AUNQ6ZP68 121 aa4□□□□□ -1.77
USP54-213ENST00000481991 CHTOPQ9Y3Y2 248 aaKnown RBP4□□□□□ -1.77
USP54-213ENST00000481991 C9JQL5 133 aa3.99□□□□□ -1.77
USP54-213ENST00000481991 ZNF22P17026 224 aaPredicted RBP3.99□□□□□ -1.77
USP54-213ENST00000481991 DDTP30046 118 aa3.99□□□□□ -1.77
USP54-213ENST00000481991 PEA15Q15121 130 aa3.99□□□□□ -1.77
USP54-213ENST00000481991 SFTA2Q6UW10 78 aa3.99□□□□□ -1.77
USP54-213ENST00000481991 SLC7A5P1Q8MH63 180 aa3.99□□□□□ -1.77
USP54-213ENST00000481991 S100A7L2Q5SY68 101 aa3.98□□□□□ -1.77
USP54-213ENST00000481991 Q6ZRX8 168 aa3.98□□□□□ -1.77
USP54-213ENST00000481991 MIR7-3HGQ8N6C7 128 aa3.98□□□□□ -1.77
USP54-213ENST00000481991 SMCO4Q9NRQ5 59 aa3.98□□□□□ -1.77
USP54-213ENST00000481991 LAMTOR3Q9UHA4 124 aa3.98□□□□□ -1.77
USP54-213ENST00000481991 LINC01549A6NIU2 74 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 IGLC3P0DOY3 106 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms