RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 TRAV22A0A0B4J277 110 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 IGLV8-61A0A075B6I0 122 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 CD164Q04900 197 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 Q6ZSN1 163 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 C22orf24Q9Y442 160 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 PTPRBP23467 1997 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 PRO0461Q9UI25 63 aa6.15□□□□□ -1.42
SYNE1-224ENST00000478916 Q6ZQT0 140 aa6.15□□□□□ -1.42
SYNE1-224ENST00000478916 LOC110117498A0A087WWA1 95 aa6.15□□□□□ -1.42
SYNE1-224ENST00000478916 TM2D3Q9BRN9 247 aa6.15□□□□□ -1.42
SYNE1-224ENST00000478916 IGLV5-39A0A0G2JS06 123 aa6.14□□□□□ -1.43
SYNE1-224ENST00000478916 TLN1Q9Y490 2541 aaKnown RBP6.14□□□□□ -1.43
SYNE1-224ENST00000478916 MDFIQ99750 246 aa6.14□□□□□ -1.43
SYNE1-224ENST00000478916 FAM19A4Q96LR4 140 aa6.13□□□□□ -1.43
SYNE1-224ENST00000478916 COL4A2P08572 1712 aa6.12□□□□□ -1.43
SYNE1-224ENST00000478916 MYO9AB2RTY4 2548 aa6.12□□□□□ -1.43
SYNE1-224ENST00000478916 ERC2-IT1O76042 136 aa6.11□□□□□ -1.43
SYNE1-224ENST00000478916 FAM218AQ96MZ4 157 aa6.11□□□□□ -1.43
SYNE1-224ENST00000478916 A8MUN3 132 aa6.11□□□□□ -1.43
SYNE1-224ENST00000478916 UQCR11O14957 56 aa6.11□□□□□ -1.43
SYNE1-224ENST00000478916 LINC00313P59037 77 aa6.11□□□□□ -1.43
SYNE1-224ENST00000478916 MOBPQ13875 183 aa6.11□□□□□ -1.43
SYNE1-224ENST00000478916 ELOF1P60002 83 aaKnown RBP6.1□□□□□ -1.43
SYNE1-224ENST00000478916 Q8NBF4 154 aa6.1□□□□□ -1.43
SYNE1-224ENST00000478916 CRIPTQ9P021 101 aa6.1□□□□□ -1.43
SYNE1-224ENST00000478916 LINC01600Q96MT4 127 aa6.1□□□□□ -1.43
SYNE1-224ENST00000478916 COA5Q86WW8 74 aa6.1□□□□□ -1.43
SYNE1-224ENST00000478916 SPACA4Q8TDM5 124 aa6.09□□□□□ -1.43
SYNE1-224ENST00000478916 KRTAP24-1Q3LI83 254 aa6.09□□□□□ -1.43
SYNE1-224ENST00000478916 LOC101927531A0A1B0GV80 90 aa6.09□□□□□ -1.44
SYNE1-224ENST00000478916 KTN1-AS1Q86SY8 53 aa6.09□□□□□ -1.44
SYNE1-224ENST00000478916 H3BNG1 76 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 LINC00476Q8WZB0 136 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 LRRK2Q5S007 2527 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 LCA10Q71F78 164 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 IGHV3OR16-9A0A0B4J2B5 98 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 LINC00167Q96N53 147 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 KIF25-AS1Q9Y6Z4 181 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 C2CD3Q4AC94 2353 aa6.08□□□□□ -1.44
SYNE1-224ENST00000478916 JMJD1CQ15652 2540 aa6.07□□□□□ -1.44
SYNE1-224ENST00000478916 MIR22HGQ0VDD5 57 aa6.06□□□□□ -1.44
SYNE1-224ENST00000478916 IGLV5-45A0A087WSX0 123 aa6.06□□□□□ -1.44
SYNE1-224ENST00000478916 RPL37AP61513 92 aaKnown RBP6.05□□□□□ -1.44
SYNE1-224ENST00000478916 FAM229AH3BQW9 127 aa6.05□□□□□ -1.44
SYNE1-224ENST00000478916 ABCA12Q86UK0 2595 aa6.05□□□□□ -1.44
SYNE1-224ENST00000478916 TRBV7-4A0A0J9YYF1 115 aa6.04□□□□□ -1.44
SYNE1-224ENST00000478916 DOPEY1Q5JWR5 2465 aa6.04□□□□□ -1.44
SYNE1-224ENST00000478916 Q6ZRX8 168 aa6.04□□□□□ -1.44
SYNE1-224ENST00000478916 LINC00336Q6ZUF6 198 aa6.03□□□□□ -1.44
SYNE1-224ENST00000478916 A8MWP4 228 aa6.03□□□□□ -1.44
SYNE1-224ENST00000478916 ZFYVE26Q68DK2 2539 aa6.03□□□□□ -1.44
SYNE1-224ENST00000478916 ANKRD11Q6UB99 2663 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-224ENST00000478916 WWC2-AS2Q96NR7 200 aa6.02□□□□□ -1.45
SYNE1-224ENST00000478916 NBDYA0A0U1RRE5 68 aa6.02□□□□□ -1.45
SYNE1-224ENST00000478916 APLNQ9ULZ1 77 aa6.01□□□□□ -1.45
SYNE1-224ENST00000478916 RTL8CO15255 209 aa6.01□□□□□ -1.45
SYNE1-224ENST00000478916 KLKP1Q107X0 134 aa6.01□□□□□ -1.45
SYNE1-224ENST00000478916 LINC00315P59091 139 aa6□□□□□ -1.45
SYNE1-224ENST00000478916 MRPL34Q9BQ48 92 aaKnown RBP6□□□□□ -1.45
SYNE1-224ENST00000478916 CEP295Q9C0D2 2601 aa6□□□□□ -1.45
SYNE1-224ENST00000478916 EPM2AB3EWF7 344 aa6□□□□□ -1.45
SYNE1-224ENST00000478916 K7EQZ3 153 aa6□□□□□ -1.45
SYNE1-224ENST00000478916 C16orf90A8MZG2 172 aa5.99□□□□□ -1.45
SYNE1-224ENST00000478916 Q96NJ1 140 aa5.99□□□□□ -1.45
SYNE1-224ENST00000478916 ST20-AS1Q8NBB2 130 aa5.98□□□□□ -1.45
SYNE1-224ENST00000478916 ZNF462Q96JM2 2506 aa5.98□□□□□ -1.45
SYNE1-224ENST00000478916 Q6ZRP5 223 aa5.98□□□□□ -1.45
SYNE1-224ENST00000478916 Q8NAQ8 132 aa5.98□□□□□ -1.45
SYNE1-224ENST00000478916 PHF5AQ7RTV0 110 aaKnown RBP5.97□□□□□ -1.45
SYNE1-224ENST00000478916 TYMSOSQ8TAI1 123 aa5.97□□□□□ -1.45
SYNE1-224ENST00000478916 PCNTO95613 3336 aa5.97□□□□□ -1.45
SYNE1-224ENST00000478916 COL27A1Q8IZC6 1860 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-224ENST00000478916 USP9XQ93008 2570 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-224ENST00000478916 TLN2Q9Y4G6 2542 aa5.96□□□□□ -1.45
SYNE1-224ENST00000478916 FN1P02751 2386 aaKnown RBP5.96□□□□□ -1.46
SYNE1-224ENST00000478916 CHD8Q9HCK8 2581 aa5.96□□□□□ -1.46
SYNE1-224ENST00000478916 EP400Q96L91 3159 aa5.96□□□□□ -1.46
SYNE1-224ENST00000478916 PRR15Q8IV56 129 aa5.96□□□□□ -1.46
SYNE1-224ENST00000478916 LINC00588Q9Y4M8 146 aa5.96□□□□□ -1.46
SYNE1-224ENST00000478916 SRCAPQ6ZRS2 3230 aa5.95□□□□□ -1.46
SYNE1-224ENST00000478916 LUZP6Q538Z0 58 aa5.95□□□□□ -1.46
SYNE1-224ENST00000478916 IGLV6-57P01721 117 aa5.95□□□□□ -1.46
SYNE1-224ENST00000478916 H7BZZ5 65 aa5.94□□□□□ -1.46
SYNE1-224ENST00000478916 CDC42SE1Q9NRR8 79 aa5.94□□□□□ -1.46
SYNE1-224ENST00000478916 LINC01554Q52M75 96 aa5.94□□□□□ -1.46
SYNE1-224ENST00000478916 CHTF8P0CG12 524 aa5.93□□□□□ -1.46
SYNE1-224ENST00000478916 C9orf129Q5T035 196 aaKnown RBP5.93□□□□□ -1.46
SYNE1-224ENST00000478916 GVQW2A0A096LPI5 108 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-224ENST00000478916 WDR87Q6ZQQ6 2873 aa5.93□□□□□ -1.46
SYNE1-224ENST00000478916 LITAFQ99732 161 aa5.92□□□□□ -1.46
SYNE1-224ENST00000478916 J3QL48 77 aa5.92□□□□□ -1.46
SYNE1-224ENST00000478916 DNAH10OSP0CZ25 163 aa5.91□□□□□ -1.46
SYNE1-224ENST00000478916 SPTBN4Q9H254 2564 aa5.91□□□□□ -1.46
SYNE1-224ENST00000478916 KLK9Q2XQG4 91 aa5.91□□□□□ -1.46
SYNE1-224ENST00000478916 C8orf17Q9NRJ1 99 aa5.9□□□□□ -1.46
SYNE1-224ENST00000478916 PCSK5Q92824 1860 aa5.89□□□□□ -1.47
SYNE1-224ENST00000478916 SPANXA2-OT1Q8N9U9 137 aa5.89□□□□□ -1.47
SYNE1-224ENST00000478916 USP9YO00507 2555 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-224ENST00000478916 ANKRD17O75179 2603 aaKnown RBP5.88□□□□□ -1.47
SYNE1-224ENST00000478916 WIPF1O43516 503 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms