RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 CDIP1Q9H305 208 aa7.81□□□□□ -1.16
CHD3-209ENST00000473376 IFITM2Q01629 132 aa7.8□□□□□ -1.16
CHD3-209ENST00000473376 TMEM170BQ5T4T1 132 aa7.8□□□□□ -1.16
CHD3-209ENST00000473376 FP248Q71RG6 208 aaPredicted RBP7.8□□□□□ -1.16
CHD3-209ENST00000473376 BAGE3Q86Y29 109 aa7.8□□□□□ -1.16
CHD3-209ENST00000473376 RPS10P5Q9NQ39 176 aa7.8□□□□□ -1.16
CHD3-209ENST00000473376 TRAPPC1Q9Y5R8 145 aa7.8□□□□□ -1.16
CHD3-209ENST00000473376 ZNF706Q9Y5V0 76 aaPredicted RBP7.8□□□□□ -1.16
CHD3-209ENST00000473376 C11orf86A6NJI1 115 aa7.79□□□□□ -1.16
CHD3-209ENST00000473376 LINC00587B1AMM8 73 aa7.79□□□□□ -1.16
CHD3-209ENST00000473376 TRAV12-1A0A0B4J245 112 aa7.78□□□□□ -1.16
CHD3-209ENST00000473376 SPRR4Q96PI1 79 aa7.78□□□□□ -1.16
CHD3-209ENST00000473376 SPRR1AP35321 89 aa7.77□□□□□ -1.17
CHD3-209ENST00000473376 LINC00158P58513 81 aa7.77□□□□□ -1.17
CHD3-209ENST00000473376 LINC00337Q8N6G1 96 aa7.77□□□□□ -1.17
CHD3-209ENST00000473376 Q8NDZ9 215 aa7.77□□□□□ -1.17
CHD3-209ENST00000473376 RETNLBQ9BQ08 111 aa7.77□□□□□ -1.17
CHD3-209ENST00000473376 CHTOPQ9Y3Y2 248 aaKnown RBP7.77□□□□□ -1.17
CHD3-209ENST00000473376 TMEM223A0PJW6 202 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 PRYO14603 147 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 HERV-K104P63124 156 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 COMMD7Q86VX2 200 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 CHCHD1Q96BP2 118 aaKnown RBP7.76□□□□□ -1.17
CHD3-209ENST00000473376 HIGD2AQ9BW72 106 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 PPDPFQ9H3Y8 114 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 KCNQ1DNQ9H478 68 aa7.76□□□□□ -1.17
CHD3-209ENST00000473376 KRTAP9-2Q9BYQ4 174 aa7.75□□□□□ -1.17
CHD3-209ENST00000473376 PMCHL1Q16048 86 aa7.74□□□□□ -1.17
CHD3-209ENST00000473376 C4orf48Q5BLP8 95 aa7.74□□□□□ -1.17
CHD3-209ENST00000473376 C3orf22Q8N5N4 141 aa7.74□□□□□ -1.17
CHD3-209ENST00000473376 ATP6V1G1O75348 118 aa7.73□□□□□ -1.17
CHD3-209ENST00000473376 SPINK1P00995 79 aa7.73□□□□□ -1.17
CHD3-209ENST00000473376 RPS29P62273 56 aaKnown RBP7.73□□□□□ -1.17
CHD3-209ENST00000473376 IFI27L1Q96BM0 104 aa7.73□□□□□ -1.17
CHD3-209ENST00000473376 LOC107984156A0A0G2JMH3 177 aa7.72□□□□□ -1.17
CHD3-209ENST00000473376 KRTAP4-16G5E9R7 235 aaPredicted RBP7.72□□□□□ -1.17
CHD3-209ENST00000473376 S100A12P80511 92 aa7.72□□□□□ -1.17
CHD3-209ENST00000473376 LINC00483Q53H64 154 aa7.72□□□□□ -1.17
CHD3-209ENST00000473376 ARL17AQ8IVW1 177 aa7.72□□□□□ -1.17
CHD3-209ENST00000473376 MAP1LC3CQ9BXW4 147 aa7.72□□□□□ -1.17
CHD3-209ENST00000473376 SNAPINO95295 136 aa7.71□□□□□ -1.18
CHD3-209ENST00000473376 BOD1L2Q8IYS8 172 aa7.71□□□□□ -1.18
CHD3-209ENST00000473376 SVBPQ8N300 66 aa7.71□□□□□ -1.18
CHD3-209ENST00000473376 TRBV10-2A0A0K0K1G8 114 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 MYMXA0A1B0GTQ4 84 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 SMIM13P0DJ93 91 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 NDUFA5Q16718 116 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 MEIG1Q5JSS6 88 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 SSBP3-AS1Q7Z2R9 100 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 MIR7-3HGQ8N6C7 128 aa7.69□□□□□ -1.18
CHD3-209ENST00000473376 ETDCA0A1B0GVM5 59 aa7.68□□□□□ -1.18
CHD3-209ENST00000473376 KRTAP13-3Q3SY46 172 aa7.68□□□□□ -1.18
CHD3-209ENST00000473376 Q8NBF4 154 aa7.68□□□□□ -1.18
CHD3-209ENST00000473376 SMCR5Q8TEV8 140 aa7.68□□□□□ -1.18
CHD3-209ENST00000473376 NDUFA12Q9UI09 145 aa7.68□□□□□ -1.18
CHD3-209ENST00000473376 ASB16-AS1Q495Z4 193 aa7.67□□□□□ -1.18
CHD3-209ENST00000473376 FAM19A2Q8N3H0 131 aa7.67□□□□□ -1.18
CHD3-209ENST00000473376 FAT4Q6V0I7 4981 aa7.67□□□□□ -1.18
CHD3-209ENST00000473376 A0A0U1RRA0 63 aa7.66□□□□□ -1.18
CHD3-209ENST00000473376 APOC3P02656 99 aa7.66□□□□□ -1.18
CHD3-209ENST00000473376 YPEL4Q96NS1 127 aa7.66□□□□□ -1.18
CHD3-209ENST00000473376 TRBV10-3A0A0K0K1G6 114 aa7.65□□□□□ -1.18
CHD3-209ENST00000473376 C5orf52A6NGY3 159 aa7.64□□□□□ -1.19
CHD3-209ENST00000473376 B5MCH6 92 aa7.64□□□□□ -1.19
CHD3-209ENST00000473376 HSBP1O75506 76 aa7.64□□□□□ -1.19
CHD3-209ENST00000473376 NDUFC2O95298 119 aa7.64□□□□□ -1.19
CHD3-209ENST00000473376 PLNP26678 52 aa7.64□□□□□ -1.19
CHD3-209ENST00000473376 MUC17Q685J3 4493 aa7.64□□□□□ -1.19
CHD3-209ENST00000473376 NCR3O14931 201 aa7.63□□□□□ -1.19
CHD3-209ENST00000473376 NMUP48645 174 aa7.63□□□□□ -1.19
CHD3-209ENST00000473376 SEC61BP60468 96 aaKnown RBP7.63□□□□□ -1.19
CHD3-209ENST00000473376 LEPROTO15243 131 aa7.62□□□□□ -1.19
CHD3-209ENST00000473376 SLC25A20O43772 301 aa7.62□□□□□ -1.19
CHD3-209ENST00000473376 Q6ZRX8 168 aa7.62□□□□□ -1.19
CHD3-209ENST00000473376 DAND5Q8N907 189 aa7.62□□□□□ -1.19
CHD3-209ENST00000473376 SPANXB1Q9NS25 103 aaPredicted RBP7.62□□□□□ -1.19
CHD3-209ENST00000473376 DDTP30046 118 aa7.61□□□□□ -1.19
CHD3-209ENST00000473376 JOSD1Q15040 202 aaPredicted RBP7.61□□□□□ -1.19
CHD3-209ENST00000473376 GAGE2AQ6NT46 116 aa7.61□□□□□ -1.19
CHD3-209ENST00000473376 CBY1Q9Y3M2 126 aa7.61□□□□□ -1.19
CHD3-209ENST00000473376 LEPROTL1O95214 131 aa7.6□□□□□ -1.19
CHD3-209ENST00000473376 IGLV6-57P01721 117 aa7.6□□□□□ -1.19
CHD3-209ENST00000473376 Q8N377 158 aa7.6□□□□□ -1.19
CHD3-209ENST00000473376 J3QQQ9 107 aa7.59□□□□□ -1.19
CHD3-209ENST00000473376 HERVK_113P61574 105 aa7.59□□□□□ -1.19
CHD3-209ENST00000473376 MIEN1Q9BRT3 115 aa7.59□□□□□ -1.19
CHD3-209ENST00000473376 HSPB8Q9UJY1 196 aa7.59□□□□□ -1.19
CHD3-209ENST00000473376 MOBPQ13875 183 aa7.58□□□□□ -1.2
CHD3-209ENST00000473376 Q9BRP9 147 aa7.58□□□□□ -1.2
CHD3-209ENST00000473376 ERC2-IT1O76042 136 aa7.57□□□□□ -1.2
CHD3-209ENST00000473376 LINC01547P58512 204 aaPredicted RBP7.57□□□□□ -1.2
CHD3-209ENST00000473376 TSPEAR-AS2P59090 65 aa7.57□□□□□ -1.2
CHD3-209ENST00000473376 DPM2O94777 84 aa7.56□□□□□ -1.2
CHD3-209ENST00000473376 S100A7L2Q5SY68 101 aa7.56□□□□□ -1.2
CHD3-209ENST00000473376 XP32Q5T750 250 aa7.56□□□□□ -1.2
CHD3-209ENST00000473376 IGLV9-49A0A0B4J1Y8 123 aa7.55□□□□□ -1.2
CHD3-209ENST00000473376 KRTAP9-6A0A140TA67 174 aa7.55□□□□□ -1.2
CHD3-209ENST00000473376 TRAV23DV6A0A075B6W5 121 aa7.54□□□□□ -1.2
CHD3-209ENST00000473376 ZNF73O43830 326 aaPredicted RBP7.54□□□□□ -1.2
CHD3-209ENST00000473376 IGKCP01834 107 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 155.7 ms