RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 AKAP13Q12802 2813 aa9.42□□□□□ -0.9
COL6A3-209ENST00000472056 A0A1W2PNU3 283 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-209ENST00000472056 Q6ZQT0 140 aa9.41□□□□□ -0.9
COL6A3-209ENST00000472056 SPATA3Q8NHX4 192 aa9.41□□□□□ -0.9
COL6A3-209ENST00000472056 IGKV2D-30A0A075B6S6 120 aa9.4□□□□□ -0.9
COL6A3-209ENST00000472056 IGKV2-30P06310 120 aa9.4□□□□□ -0.9
COL6A3-209ENST00000472056 LINC01006Q8NI28 216 aa9.4□□□□□ -0.9
COL6A3-209ENST00000472056 KLKP1Q107X0 134 aa9.4□□□□□ -0.9
COL6A3-209ENST00000472056 LOC101927531A0A1B0GV80 90 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 ODF3L2Q3SX64 289 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 C9orf116Q5BN46 136 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-209ENST00000472056 C6orf223Q8N319 242 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 IGHV3OR16-9A0A0B4J2B5 98 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 SMIM29Q86T20 159 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 Q8NBF4 154 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 CENPFP49454 3210 aa9.39□□□□□ -0.91
COL6A3-209ENST00000472056 IGLV4-60A0A075B6I1 120 aa9.38□□□□□ -0.91
COL6A3-209ENST00000472056 H3BNG1 76 aa9.38□□□□□ -0.91
COL6A3-209ENST00000472056 CRIPTQ9P021 101 aa9.38□□□□□ -0.91
COL6A3-209ENST00000472056 PRR3P79522 188 aaKnown RBP9.38□□□□□ -0.91
COL6A3-209ENST00000472056 TRBV7-4A0A0J9YYF1 115 aa9.37□□□□□ -0.91
COL6A3-209ENST00000472056 FSHBP01225 129 aa9.37□□□□□ -0.91
COL6A3-209ENST00000472056 SSBP3-AS1Q7Z2R9 100 aa9.37□□□□□ -0.91
COL6A3-209ENST00000472056 KIF25-AS1Q9Y6Z4 181 aa9.36□□□□□ -0.91
COL6A3-209ENST00000472056 C16orf95Q9H693 158 aa9.35□□□□□ -0.91
COL6A3-209ENST00000472056 SMCPP49901 116 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-209ENST00000472056 IGLV5-52A0A0A0MRZ9 124 aa9.34□□□□□ -0.91
COL6A3-209ENST00000472056 FAM19A4Q96LR4 140 aa9.33□□□□□ -0.92
COL6A3-209ENST00000472056 UQCR11O14957 56 aa9.33□□□□□ -0.92
COL6A3-209ENST00000472056 LINC01556Q5JQF7 62 aa9.32□□□□□ -0.92
COL6A3-209ENST00000472056 PLA2G5P39877 138 aa9.31□□□□□ -0.92
COL6A3-209ENST00000472056 Q6ZRX8 168 aa9.31□□□□□ -0.92
COL6A3-209ENST00000472056 KTN1-AS1Q86SY8 53 aa9.31□□□□□ -0.92
COL6A3-209ENST00000472056 MDFIQ99750 246 aa9.31□□□□□ -0.92
COL6A3-209ENST00000472056 GVQW2A0A096LPI5 108 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-209ENST00000472056 KIAA0087Q14695 138 aa9.3□□□□□ -0.92
COL6A3-209ENST00000472056 Q9UF83 564 aa9.3□□□□□ -0.92
COL6A3-209ENST00000472056 LYPD5Q6UWN5 251 aa9.3□□□□□ -0.92
COL6A3-209ENST00000472056 DEFB116Q30KQ4 102 aa9.29□□□□□ -0.92
COL6A3-209ENST00000472056 LUZP6Q538Z0 58 aa9.29□□□□□ -0.92
COL6A3-209ENST00000472056 FAM229AH3BQW9 127 aa9.28□□□□□ -0.92
COL6A3-209ENST00000472056 LY6G6CO95867 125 aa9.27□□□□□ -0.92
COL6A3-209ENST00000472056 M0R2N4 97 aa9.27□□□□□ -0.93
COL6A3-209ENST00000472056 C10orf99Q6UWK7 81 aa9.27□□□□□ -0.93
COL6A3-209ENST00000472056 A8MWP4 228 aa9.26□□□□□ -0.93
COL6A3-209ENST00000472056 LINC00313P59037 77 aa9.26□□□□□ -0.93
COL6A3-209ENST00000472056 C22orf24Q9Y442 160 aa9.26□□□□□ -0.93
COL6A3-209ENST00000472056 COL4A2P08572 1712 aa9.25□□□□□ -0.93
COL6A3-209ENST00000472056 TM2D3Q9BRN9 247 aa9.25□□□□□ -0.93
COL6A3-209ENST00000472056 SPANXA2-OT1Q8N9U9 137 aa9.25□□□□□ -0.93
COL6A3-209ENST00000472056 IGLV6-57P01721 117 aa9.25□□□□□ -0.93
COL6A3-209ENST00000472056 PRR15Q8IV56 129 aa9.24□□□□□ -0.93
COL6A3-209ENST00000472056 INAFM1C9JVW0 142 aa9.24□□□□□ -0.93
COL6A3-209ENST00000472056 Q6ZRU5 148 aa9.24□□□□□ -0.93
COL6A3-209ENST00000472056 SMCR5Q8TEV8 140 aa9.24□□□□□ -0.93
COL6A3-209ENST00000472056 LY6G6DO95868 133 aa9.23□□□□□ -0.93
COL6A3-209ENST00000472056 LINC01600Q96MT4 127 aa9.23□□□□□ -0.93
COL6A3-209ENST00000472056 IGLV8-61A0A075B6I0 122 aa9.23□□□□□ -0.93
COL6A3-209ENST00000472056 RPL37AP61513 92 aaKnown RBP9.22□□□□□ -0.93
COL6A3-209ENST00000472056 C19orf84I3L1E1 186 aa9.22□□□□□ -0.93
COL6A3-209ENST00000472056 A8MTW9 85 aa9.21□□□□□ -0.93
COL6A3-209ENST00000472056 LINC00315P59091 139 aa9.21□□□□□ -0.93
COL6A3-209ENST00000472056 Q6ZSN1 163 aa9.21□□□□□ -0.93
COL6A3-209ENST00000472056 WIPF1O43516 503 aa9.21□□□□□ -0.93
COL6A3-209ENST00000472056 HECTD1Q9ULT8 2610 aa9.21□□□□□ -0.94
COL6A3-209ENST00000472056 C10orf142B7Z368 130 aa9.21□□□□□ -0.94
COL6A3-209ENST00000472056 LCA10Q71F78 164 aa9.21□□□□□ -0.94
COL6A3-209ENST00000472056 C18orf65Q6ZTR6 163 aa9.2□□□□□ -0.94
COL6A3-209ENST00000472056 LINC00476Q8WZB0 136 aa9.2□□□□□ -0.94
COL6A3-209ENST00000472056 FAM218AQ96MZ4 157 aa9.19□□□□□ -0.94
COL6A3-209ENST00000472056 MIR22HGQ0VDD5 57 aa9.18□□□□□ -0.94
COL6A3-209ENST00000472056 COA5Q86WW8 74 aa9.18□□□□□ -0.94
COL6A3-209ENST00000472056 C16orf90A8MZG2 172 aa9.18□□□□□ -0.94
COL6A3-209ENST00000472056 Q6ZRP5 223 aa9.17□□□□□ -0.94
COL6A3-209ENST00000472056 CENPEQ02224 2701 aa9.17□□□□□ -0.94
COL6A3-209ENST00000472056 LINC01554Q52M75 96 aa9.17□□□□□ -0.94
COL6A3-209ENST00000472056 FHL3Q13643 280 aa9.16□□□□□ -0.94
COL6A3-209ENST00000472056 LINC00167Q96N53 147 aa9.16□□□□□ -0.94
COL6A3-209ENST00000472056 MAST4O15021 2626 aa9.16□□□□□ -0.94
COL6A3-209ENST00000472056 NBEAL1Q6ZS30 2694 aa9.16□□□□□ -0.94
COL6A3-209ENST00000472056 C1orf134Q5TEV5 83 aa9.16□□□□□ -0.94
COL6A3-209ENST00000472056 WISP2O76076 250 aa9.15□□□□□ -0.94
COL6A3-209ENST00000472056 KLK9Q2XQG4 91 aa9.13□□□□□ -0.95
COL6A3-209ENST00000472056 EPM2AB3EWF7 344 aa9.12□□□□□ -0.95
COL6A3-209ENST00000472056 H7BZZ5 65 aa9.12□□□□□ -0.95
COL6A3-209ENST00000472056 MGAM2Q2M2H8 2515 aa9.12□□□□□ -0.95
COL6A3-209ENST00000472056 SPACA4Q8TDM5 124 aa9.11□□□□□ -0.95
COL6A3-209ENST00000472056 LITAFQ99732 161 aa9.1□□□□□ -0.95
COL6A3-209ENST00000472056 FLNAP21333 2647 aaKnown RBP9.1□□□□□ -0.95
COL6A3-209ENST00000472056 MRPL34Q9BQ48 92 aaKnown RBP9.1□□□□□ -0.95
COL6A3-209ENST00000472056 Q1T7F1 81 aa9.09□□□□□ -0.95
COL6A3-209ENST00000472056 KCNQ1DNQ9H478 68 aa9.09□□□□□ -0.95
COL6A3-209ENST00000472056 ATRQ13535 2644 aa9.09□□□□□ -0.95
COL6A3-209ENST00000472056 CDC42SE1Q9NRR8 79 aa9.08□□□□□ -0.96
COL6A3-209ENST00000472056 EDN2P20800 178 aa9.08□□□□□ -0.96
COL6A3-209ENST00000472056 SRCAPQ6ZRS2 3230 aa9.07□□□□□ -0.96
COL6A3-209ENST00000472056 LINC00336Q6ZUF6 198 aa9.07□□□□□ -0.96
COL6A3-209ENST00000472056 CFAP46Q8IYW2 2715 aa9.06□□□□□ -0.96
COL6A3-209ENST00000472056 A8MUN3 132 aa9.05□□□□□ -0.96
COL6A3-209ENST00000472056 KMT2BQ9UMN6 2715 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms