RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 TIMM17AQ99595 171 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 TIMM21Q9BVV7 248 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 HSPB8Q9UJY1 196 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 CSDC2Q9Y534 153 aaKnown RBP2.41□□□□□ -2.02
SYNE1-218ENST00000468937 ICOSQ9Y6W8 199 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 MYCBP2O75592 4640 aa2.4□□□□□ -2.02
SYNE1-218ENST00000468937 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-218ENST00000468937 IGKV2-29A2NJV5 120 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-218ENST00000468937 A8MUU9 505 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-218ENST00000468937 SMIM6P0DI80 62 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 FGF6P10767 208 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 ZNF25P17030 456 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-218ENST00000468937 AKR1D1P51857 326 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 KRTDAPP60985 99 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 MRPS36P82909 103 aaKnown RBP2.4□□□□□ -2.03
SYNE1-218ENST00000468937 ESRGQ1W209 222 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 LELP1Q5T871 98 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 LYPD5Q6UWN5 251 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 Q6ZUT4 128 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 C15orf53Q8NAA6 179 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 TMEM141Q96I45 108 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 SCGB3A1Q96QR1 104 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 CAMK2N2Q96S95 79 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 AMELXQ99217 191 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 TMEM243Q9BU79 118 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 MAP1LC3CQ9BXW4 147 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 SPANXA1Q9NS26 97 aa2.4□□□□□ -2.03
SYNE1-218ENST00000468937 A0A087WX48 190 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 TRAV12-1A0A0B4J245 112 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 IGLL5B9A064 214 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 F8VRH5 84 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 KRTAP12-4P60329 112 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 PMVKQ15126 192 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 MPV17L2Q567V2 206 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 RNASE13Q5GAN3 156 aaKnown RBP2.39□□□□□ -2.03
SYNE1-218ENST00000468937 TEX43Q6ZNM6 134 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 FAM19A3Q7Z5A8 133 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 WFDC10BQ8IUB3 73 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 CST9LQ9H4G1 147 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 GEMIN7Q9H840 131 aaKnown RBP2.39□□□□□ -2.03
SYNE1-218ENST00000468937 CDC42SE2Q9NRR3 84 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 APLNQ9ULZ1 77 aa2.39□□□□□ -2.03
SYNE1-218ENST00000468937 FLG2Q5D862 2391 aaPredicted RBP2.38□□□□□ -2.03
SYNE1-218ENST00000468937 UBE2L6O14933 153 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 IGLC3P0DOY3 106 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 UBE2D1P51668 147 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 RBX1P62877 108 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 SMAGPQ0VAQ4 97 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 AMMECR1LQ6DCA0 310 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 ZNF664Q8N3J9 261 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 OR5A1Q8NGJ0 315 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 C12orf57Q99622 126 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 PMCHL2Q9BQD1 86 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 UPK3BQ9BT76 320 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 MRPL35Q9NZE8 188 aaKnown RBP2.38□□□□□ -2.03
SYNE1-218ENST00000468937 MRPS16Q9Y3D3 137 aaKnown RBP2.38□□□□□ -2.03
SYNE1-218ENST00000468937 LINC00588Q9Y4M8 146 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 HERC1Q15751 4861 aa2.38□□□□□ -2.03
SYNE1-218ENST00000468937 TRAV8-6A0A0B4J262 113 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 A0A0J9YXV3 536 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 LINC00959A0A1B0GUT2 108 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 TINCRA0A1B0GVN0 87 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 C20orf202A1L168 122 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 C11orf86A6NJI1 115 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 DPM2O94777 84 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 IGKCP01834 107 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 ZNF22P17026 224 aaPredicted RBP2.37□□□□□ -2.03
SYNE1-218ENST00000468937 KRTAP12-3P60328 96 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 PKIAP61925 76 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 LINC01556Q5JQF7 62 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 ATOH7Q8N100 152 aa2.37□□□□□ -2.03
SYNE1-218ENST00000468937 IGKV2D-26A0A0A0MRZ7 120 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV3OR16-9A0A0B4J2B5 98 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 TMEM262E9PQX1 116 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 SIVA1O15304 175 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV3-30P01768 117 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV3-33P01772 117 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 ANGP03950 147 aaKnown RBP2.36□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV3-30-3P0DP02 117 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV3-30-5P0DP03 117 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 PLNP26678 52 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 CCL18P55774 89 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 HERVK_113P63121 156 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 COX6A2Q02221 97 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 KRTAP26-1Q6PEX3 210 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 CLPSL2Q6UWE3 100 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 ENHOQ6UWT2 76 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 LINC00269Q8N2A0 174 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 C2orf88Q9BSF0 95 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 VAMP8Q9BV40 100 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 CDKN2A-AS1Q9UH64 79 aa2.36□□□□□ -2.03
SYNE1-218ENST00000468937 TRAV13-1A0A0B4J241 112 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 IGKV3OR2-268A0A0C4DH90 116 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 IBA57-AS1B1ANH7 110 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 HSBP1L1C9JCN9 74 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 CCL25O15444 150 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 SEC11AP67812 179 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 SPATA45Q537H7 98 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 TMEM170BQ5T4T1 132 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms