RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 FAM19A1Q7Z5A9 133 aa12.31□□□□□ -0.44
SHANK1-206ENST00000468654 SVBPQ8N300 66 aa12.31□□□□□ -0.44
SHANK1-206ENST00000468654 CHTOPQ9Y3Y2 248 aaKnown RBP12.31□□□□□ -0.44
SHANK1-206ENST00000468654 NDUFA5Q16718 116 aa12.3□□□□□ -0.44
SHANK1-206ENST00000468654 TRAV12-1A0A0B4J245 112 aa12.28□□□□□ -0.44
SHANK1-206ENST00000468654 TMEM223A0PJW6 202 aa12.28□□□□□ -0.44
SHANK1-206ENST00000468654 YPEL4Q96NS1 127 aa12.28□□□□□ -0.44
SHANK1-206ENST00000468654 LINC00304Q8N9R0 145 aa12.27□□□□□ -0.45
SHANK1-206ENST00000468654 CHCHD1Q96BP2 118 aaKnown RBP12.27□□□□□ -0.45
SHANK1-206ENST00000468654 LINC00158P58513 81 aa12.26□□□□□ -0.45
SHANK1-206ENST00000468654 IFI27L1Q96BM0 104 aa12.26□□□□□ -0.45
SHANK1-206ENST00000468654 IGKV2D-26A0A0A0MRZ7 120 aa12.25□□□□□ -0.45
SHANK1-206ENST00000468654 PLEKHB2Q96CS7 222 aa12.24□□□□□ -0.45
SHANK1-206ENST00000468654 CBLN2Q8IUK8 224 aa12.23□□□□□ -0.45
SHANK1-206ENST00000468654 A0A0U1RRA0 63 aa12.22□□□□□ -0.45
SHANK1-206ENST00000468654 SMIM13P0DJ93 91 aa12.2□□□□□ -0.46
SHANK1-206ENST00000468654 CTAG1AP78358 180 aa12.2□□□□□ -0.46
SHANK1-206ENST00000468654 RETNLBQ9BQ08 111 aa12.2□□□□□ -0.46
SHANK1-206ENST00000468654 HIGD2AQ9BW72 106 aa12.2□□□□□ -0.46
SHANK1-206ENST00000468654 FAT4Q6V0I7 4981 aa12.19□□□□□ -0.46
SHANK1-206ENST00000468654 C3orf22Q8N5N4 141 aa12.18□□□□□ -0.46
SHANK1-206ENST00000468654 A0A0U1RQV1 116 aa12.17□□□□□ -0.46
SHANK1-206ENST00000468654 PRYO14603 147 aa12.17□□□□□ -0.46
SHANK1-206ENST00000468654 HERV-K104P63124 156 aa12.17□□□□□ -0.46
SHANK1-206ENST00000468654 MEIG1Q5JSS6 88 aa12.17□□□□□ -0.46
SHANK1-206ENST00000468654 ATP6V1G1O75348 118 aa12.16□□□□□ -0.46
SHANK1-206ENST00000468654 HSBP1O75506 76 aa12.16□□□□□ -0.46
SHANK1-206ENST00000468654 BOD1L2Q8IYS8 172 aa12.16□□□□□ -0.46
SHANK1-206ENST00000468654 FAM19A2Q8N3H0 131 aa12.16□□□□□ -0.46
SHANK1-206ENST00000468654 MIR7-3HGQ8N6C7 128 aa12.16□□□□□ -0.46
SHANK1-206ENST00000468654 SPRR4Q96PI1 79 aa12.16□□□□□ -0.46
SHANK1-206ENST00000468654 NDUFA12Q9UI09 145 aa12.15□□□□□ -0.46
SHANK1-206ENST00000468654 NCR3O14931 201 aa12.14□□□□□ -0.47
SHANK1-206ENST00000468654 TPRXLQ17RH7 258 aa12.14□□□□□ -0.47
SHANK1-206ENST00000468654 SPRR1AP35321 89 aa12.13□□□□□ -0.47
SHANK1-206ENST00000468654 LINC00337Q8N6G1 96 aa12.13□□□□□ -0.47
SHANK1-206ENST00000468654 ZNF706Q9Y5V0 76 aaPredicted RBP12.13□□□□□ -0.47
SHANK1-206ENST00000468654 MUC17Q685J3 4493 aa12.12□□□□□ -0.47
SHANK1-206ENST00000468654 LINC00587B1AMM8 73 aa12.12□□□□□ -0.47
SHANK1-206ENST00000468654 KCNQ1DNQ9H478 68 aa12.12□□□□□ -0.47
SHANK1-206ENST00000468654 MYMXA0A1B0GTQ4 84 aa12.11□□□□□ -0.47
SHANK1-206ENST00000468654 IGLV7-46A0A075B6I9 117 aa12.1□□□□□ -0.47
SHANK1-206ENST00000468654 KRTAP4-16G5E9R7 235 aaPredicted RBP12.1□□□□□ -0.47
SHANK1-206ENST00000468654 H0Y8G0 127 aa12.1□□□□□ -0.47
SHANK1-206ENST00000468654 LINC00310P59036 64 aa12.1□□□□□ -0.47
SHANK1-206ENST00000468654 TSPEAR-AS2P59090 65 aa12.1□□□□□ -0.47
SHANK1-206ENST00000468654 LCE2AQ5TA79 106 aaPredicted RBP12.1□□□□□ -0.47
SHANK1-206ENST00000468654 KRTAP9-2Q9BYQ4 174 aa12.1□□□□□ -0.47
SHANK1-206ENST00000468654 SPAG11AQ6PDA7 123 aa12.09□□□□□ -0.47
SHANK1-206ENST00000468654 MAP1LC3CQ9BXW4 147 aa12.09□□□□□ -0.47
SHANK1-206ENST00000468654 TRBV10-3A0A0K0K1G6 114 aa12.08□□□□□ -0.48
SHANK1-206ENST00000468654 LEPROTL1O95214 131 aa12.08□□□□□ -0.48
SHANK1-206ENST00000468654 TRGC2P03986 189 aa12.08□□□□□ -0.48
SHANK1-206ENST00000468654 ETDCA0A1B0GVM5 59 aa12.07□□□□□ -0.48
SHANK1-206ENST00000468654 LEPROTO15243 131 aa12.07□□□□□ -0.48
SHANK1-206ENST00000468654 SERF1AO75920 110 aa12.07□□□□□ -0.48
SHANK1-206ENST00000468654 LOC107984156A0A0G2JMH3 177 aa12.06□□□□□ -0.48
SHANK1-206ENST00000468654 ARL17AQ8IVW1 177 aa12.06□□□□□ -0.48
SHANK1-206ENST00000468654 CDIP1Q9H305 208 aa12.06□□□□□ -0.48
SHANK1-206ENST00000468654 PLNP26678 52 aa12.05□□□□□ -0.48
SHANK1-206ENST00000468654 SMCR5Q8TEV8 140 aa12.05□□□□□ -0.48
SHANK1-206ENST00000468654 LINC00483Q53H64 154 aa12.03□□□□□ -0.48
SHANK1-206ENST00000468654 DAND5Q8N907 189 aa12.03□□□□□ -0.48
SHANK1-206ENST00000468654 TRBV10-2A0A0K0K1G8 114 aa12.02□□□□□ -0.49
SHANK1-206ENST00000468654 J3QQQ9 107 aa12.02□□□□□ -0.49
SHANK1-206ENST00000468654 S100A12P80511 92 aa12.02□□□□□ -0.49
SHANK1-206ENST00000468654 PPDPFQ9H3Y8 114 aa12.02□□□□□ -0.49
SHANK1-206ENST00000468654 HSPB8Q9UJY1 196 aa12.02□□□□□ -0.49
SHANK1-206ENST00000468654 DPM2O94777 84 aa12.01□□□□□ -0.49
SHANK1-206ENST00000468654 HERVK_113P61574 105 aa12.01□□□□□ -0.49
SHANK1-206ENST00000468654 Q8NBF4 154 aa12.01□□□□□ -0.49
SHANK1-206ENST00000468654 B5MCH6 92 aa12□□□□□ -0.49
SHANK1-206ENST00000468654 DDTP30046 118 aa12□□□□□ -0.49
SHANK1-206ENST00000468654 NMUP48645 174 aa12□□□□□ -0.49
SHANK1-206ENST00000468654 C4orf48Q5BLP8 95 aa12□□□□□ -0.49
SHANK1-206ENST00000468654 FP248Q71RG6 208 aaPredicted RBP12□□□□□ -0.49
SHANK1-206ENST00000468654 SPANXB1Q9NS25 103 aaPredicted RBP11.99□□□□□ -0.49
SHANK1-206ENST00000468654 IGKCP01834 107 aa11.98□□□□□ -0.49
SHANK1-206ENST00000468654 FABP4P15090 132 aa11.98□□□□□ -0.49
SHANK1-206ENST00000468654 PMCHL2Q9BQD1 86 aa11.98□□□□□ -0.49
SHANK1-206ENST00000468654 ERC2-IT1O76042 136 aa11.96□□□□□ -0.49
SHANK1-206ENST00000468654 LGALS3P17931 250 aaKnown RBP11.96□□□□□ -0.49
SHANK1-206ENST00000468654 MIEN1Q9BRT3 115 aa11.96□□□□□ -0.49
SHANK1-206ENST00000468654 NDUFC2O95298 119 aa11.95□□□□□ -0.5
SHANK1-206ENST00000468654 SPINK1P00995 79 aa11.95□□□□□ -0.5
SHANK1-206ENST00000468654 GAGE2AQ6NT46 116 aa11.95□□□□□ -0.5
SHANK1-206ENST00000468654 Q6ZRX8 168 aa11.95□□□□□ -0.5
SHANK1-206ENST00000468654 Q9BRP9 147 aa11.95□□□□□ -0.5
SHANK1-206ENST00000468654 IGLV6-57P01721 117 aa11.94□□□□□ -0.5
SHANK1-206ENST00000468654 COLCA2A8K830 154 aa11.92□□□□□ -0.5
SHANK1-206ENST00000468654 MOBPQ13875 183 aa11.91□□□□□ -0.5
SHANK1-206ENST00000468654 S100A7L2Q5SY68 101 aa11.91□□□□□ -0.5
SHANK1-206ENST00000468654 SOSTDC1Q6X4U4 206 aa11.91□□□□□ -0.5
SHANK1-206ENST00000468654 KRTAP13-3Q3SY46 172 aa11.9□□□□□ -0.5
SHANK1-206ENST00000468654 TRAV23DV6A0A075B6W5 121 aa11.89□□□□□ -0.51
SHANK1-206ENST00000468654 IGLV9-49A0A0B4J1Y8 123 aa11.89□□□□□ -0.51
SHANK1-206ENST00000468654 A0A0J9YXY3 114 aa11.89□□□□□ -0.51
SHANK1-206ENST00000468654 E9PLD3 99 aa11.89□□□□□ -0.51
SHANK1-206ENST00000468654 EIF4EBP3O60516 100 aaPredicted RBP11.88□□□□□ -0.51
SHANK1-206ENST00000468654 RPS29P62273 56 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms