RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 IGKV2-29A2NJV5 120 aaPredicted RBP8.76□□□□□ -1.01
CXCR4-203ENST00000466288 H3BRM9 83 aa8.76□□□□□ -1.01
CXCR4-203ENST00000466288 PRR4Q16378 134 aa8.76□□□□□ -1.01
CXCR4-203ENST00000466288 OPRPNQ99935 248 aaPredicted RBP8.76□□□□□ -1.01
CXCR4-203ENST00000466288 IGLV5-45A0A087WSX0 123 aa8.75□□□□□ -1.01
CXCR4-203ENST00000466288 ZNF815PA8K554 130 aa8.75□□□□□ -1.01
CXCR4-203ENST00000466288 J3QQQ9 107 aa8.75□□□□□ -1.01
CXCR4-203ENST00000466288 LGALS3P17931 250 aaKnown RBP8.75□□□□□ -1.01
CXCR4-203ENST00000466288 UBE2D1P51668 147 aa8.75□□□□□ -1.01
CXCR4-203ENST00000466288 HERVK_113P63121 156 aa8.75□□□□□ -1.01
CXCR4-203ENST00000466288 OR5A1Q8NGJ0 315 aa8.75□□□□□ -1.01
CXCR4-203ENST00000466288 GEMIN7Q9H840 131 aaKnown RBP8.75□□□□□ -1.01
CXCR4-203ENST00000466288 IGHV1-58A0A0C4DH39 117 aa8.74□□□□□ -1.01
CXCR4-203ENST00000466288 C1orf137Q5JT78 98 aa8.74□□□□□ -1.01
CXCR4-203ENST00000466288 AMMECR1LQ6DCA0 310 aa8.74□□□□□ -1.01
CXCR4-203ENST00000466288 CEND1Q8N111 149 aa8.74□□□□□ -1.01
CXCR4-203ENST00000466288 SPANXB1Q9NS25 103 aaPredicted RBP8.74□□□□□ -1.01
CXCR4-203ENST00000466288 TMEM238LA0A1B0GVL6 79 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 A6NJY4 79 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 XCL1P47992 114 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 SYCNQ0VAF6 134 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 GAGE2BQ13066 116 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 Q6ZUT4 128 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 CDC42SE2Q9NRR3 84 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 TP73-AS1Q9UF72 201 aa8.73□□□□□ -1.01
CXCR4-203ENST00000466288 SCGB1D4Q6XE38 83 aa8.72□□□□□ -1.01
CXCR4-203ENST00000466288 DIRC1Q969H9 104 aa8.72□□□□□ -1.01
CXCR4-203ENST00000466288 HIST1H4GQ99525 98 aa8.72□□□□□ -1.01
CXCR4-203ENST00000466288 MUC17Q685J3 4493 aa8.72□□□□□ -1.01
CXCR4-203ENST00000466288 LOC107984640A0A0U1RRK4 108 aa8.71□□□□□ -1.01
CXCR4-203ENST00000466288 TAX1BP3O14907 124 aa8.71□□□□□ -1.01
CXCR4-203ENST00000466288 CCL25O15444 150 aa8.71□□□□□ -1.01
CXCR4-203ENST00000466288 C9orf116Q5BN46 136 aaPredicted RBP8.71□□□□□ -1.01
CXCR4-203ENST00000466288 TTTY13Q9BZ97 58 aa8.71□□□□□ -1.01
CXCR4-203ENST00000466288 SMIM13P0DJ93 91 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 PHF5AQ7RTV0 110 aaKnown RBP8.7□□□□□ -1.02
CXCR4-203ENST00000466288 IGLV1-50A0A075B6I6 118 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 LINC00959A0A1B0GUT2 108 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 H0Y9J4 135 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 ZNF561-AS1K7EIQ3 104 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 IGLV7-43P04211 117 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 KRTAP1-4P0C5Y4 121 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 Q6ZVH6 145 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 LINC00469Q8N7U9 141 aa8.7□□□□□ -1.02
CXCR4-203ENST00000466288 A0A1B0GWB2 263 aa8.68□□□□□ -1.02
CXCR4-203ENST00000466288 C9orf118A6NHY6 69 aa8.68□□□□□ -1.02
CXCR4-203ENST00000466288 TMEM238C9JI98 176 aa8.68□□□□□ -1.02
CXCR4-203ENST00000466288 LINC00242Q5T6M2 205 aa8.68□□□□□ -1.02
CXCR4-203ENST00000466288 IGLV5-39A0A0G2JS06 123 aa8.67□□□□□ -1.02
CXCR4-203ENST00000466288 TIMM17BO60830 172 aa8.67□□□□□ -1.02
CXCR4-203ENST00000466288 FXYD2P54710 66 aa8.66□□□□□ -1.02
CXCR4-203ENST00000466288 TSPEAR-AS2P59090 65 aa8.66□□□□□ -1.02
CXCR4-203ENST00000466288 CD164L2Q6UWJ8 174 aa8.66□□□□□ -1.02
CXCR4-203ENST00000466288 FSIP2Q5CZC0 6907 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 APOMO95445 188 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 UBE2V1Q13404 147 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 RNASE13Q5GAN3 156 aaKnown RBP8.65□□□□□ -1.02
CXCR4-203ENST00000466288 SFTA2Q6UW10 78 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 KRTAP11-1Q8IUC1 163 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 LINC01561Q8N1V8 128 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 CDKN2A-AS1Q9UH64 79 aa8.65□□□□□ -1.02
CXCR4-203ENST00000466288 A0A0J9YXY3 114 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 NDUFA12Q9UI09 145 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 NDUFA1O15239 70 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 HERV-K104P63124 156 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 VAMP3Q15836 100 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 GTF2H5Q6ZYL4 71 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 COPS9Q8WXC6 57 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 PPDPFQ9H3Y8 114 aa8.64□□□□□ -1.03
CXCR4-203ENST00000466288 A0A087WZ39 114 aa8.63□□□□□ -1.03
CXCR4-203ENST00000466288 TRAV13-1A0A0B4J241 112 aa8.63□□□□□ -1.03
CXCR4-203ENST00000466288 RPL24P83731 157 aaKnown RBP8.63□□□□□ -1.03
CXCR4-203ENST00000466288 SS18Q15532 418 aa8.63□□□□□ -1.03
CXCR4-203ENST00000466288 SPANXDQ9BXN6 97 aa8.63□□□□□ -1.03
CXCR4-203ENST00000466288 NHP2Q9NX24 153 aaKnown RBP8.63□□□□□ -1.03
CXCR4-203ENST00000466288 SPANXCQ9NY87 97 aa8.63□□□□□ -1.03
CXCR4-203ENST00000466288 SPINK8P0C7L1 97 aa8.62□□□□□ -1.03
CXCR4-203ENST00000466288 IFITM1P13164 125 aa8.62□□□□□ -1.03
CXCR4-203ENST00000466288 RPL18AQ02543 176 aaKnown RBP8.62□□□□□ -1.03
CXCR4-203ENST00000466288 CAMK2N2Q96S95 79 aa8.62□□□□□ -1.03
CXCR4-203ENST00000466288 SMIM1B2RUZ4 78 aa8.61□□□□□ -1.03
CXCR4-203ENST00000466288 RPL13AP40429 203 aaKnown RBP8.61□□□□□ -1.03
CXCR4-203ENST00000466288 A0A1W2PPM0 123 aa8.6□□□□□ -1.03
CXCR4-203ENST00000466288 FABP2P12104 132 aa8.6□□□□□ -1.03
CXCR4-203ENST00000466288 C2orf48Q96LS8 159 aa8.6□□□□□ -1.03
CXCR4-203ENST00000466288 MALP21145 153 aa8.59□□□□□ -1.03
CXCR4-203ENST00000466288 LYRM7Q5U5X0 104 aa8.59□□□□□ -1.03
CXCR4-203ENST00000466288 IGHV3OR16-9A0A0B4J2B5 98 aa8.58□□□□□ -1.04
CXCR4-203ENST00000466288 FAM168BA1KXE4 195 aa8.58□□□□□ -1.04
CXCR4-203ENST00000466288 GAGE10A6NGK3 116 aa8.58□□□□□ -1.04
CXCR4-203ENST00000466288 H3BUT2 72 aa8.58□□□□□ -1.04
CXCR4-203ENST00000466288 COX7A2LO14548 114 aa8.58□□□□□ -1.04
CXCR4-203ENST00000466288 A0A0B4J2C4 111 aa8.57□□□□□ -1.04
CXCR4-203ENST00000466288 TSPAN13O95857 204 aa8.57□□□□□ -1.04
CXCR4-203ENST00000466288 RNF151Q2KHN1 245 aa8.57□□□□□ -1.04
CXCR4-203ENST00000466288 LITAFQ99732 161 aa8.57□□□□□ -1.04
CXCR4-203ENST00000466288 K7EP34 96 aa8.57□□□□□ -1.04
CXCR4-203ENST00000466288 RAB37Q96AX2 223 aa8.57□□□□□ -1.04
CXCR4-203ENST00000466288 ZNF625Q96I27 306 aaPredicted RBP8.56□□□□□ -1.04
CXCR4-203ENST00000466288 KRTAP7-1Q8IUC3 87 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms