RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 PRRC2CQ9Y520 2896 aaKnown RBP-0.83□□□□□ -2.54
SMC4-205ENST00000465563 KNDC1Q76NI1 1749 aa-0.84□□□□□ -2.54
SMC4-205ENST00000465563 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.84□□□□□ -2.54
SMC4-205ENST00000465563 SYS1-DBNDD2H3BUS1 97 aa-0.84□□□□□ -2.54
SMC4-205ENST00000465563 SPRR2FQ96RM1 72 aa-0.84□□□□□ -2.54
SMC4-205ENST00000465563 TEP1Q99973 2627 aaKnown RBP-0.84□□□□□ -2.54
SMC4-205ENST00000465563 SPTBN4Q9H254 2564 aa-0.84□□□□□ -2.54
SMC4-205ENST00000465563 SLIT1O75093 1534 aa-0.84□□□□□ -2.54
SMC4-205ENST00000465563 KNL1Q8NG31 2342 aa-0.84□□□□□ -2.54
SMC4-205ENST00000465563 VPS13DQ5THJ4 4388 aa-0.85□□□□□ -2.54
SMC4-205ENST00000465563 LAMA1P25391 3075 aa-0.85□□□□□ -2.54
SMC4-205ENST00000465563 DSPP15924 2871 aaKnown RBP-0.85□□□□□ -2.55
SMC4-205ENST00000465563 NKTRP30414 1462 aaKnown RBP-0.85□□□□□ -2.55
SMC4-205ENST00000465563 DEFB112Q30KQ8 113 aa-0.85□□□□□ -2.55
SMC4-205ENST00000465563 APLNQ9ULZ1 77 aa-0.85□□□□□ -2.55
SMC4-205ENST00000465563 SPG11Q96JI7 2443 aa-0.85□□□□□ -2.55
SMC4-205ENST00000465563 NIPBLQ6KC79 2804 aaeCLIP-0.85□□□□□ -2.55
SMC4-205ENST00000465563 CUBNO60494 3623 aa-0.86□□□□□ -2.55
SMC4-205ENST00000465563 DNAH3Q8TD57 4116 aa-0.86□□□□□ -2.55
SMC4-205ENST00000465563 A0A1B0GU69 56 aa-0.86□□□□□ -2.55
SMC4-205ENST00000465563 CPSF4LA6NMK7 179 aaKnown RBP-0.86□□□□□ -2.55
SMC4-205ENST00000465563 GTF2H5Q6ZYL4 71 aa-0.86□□□□□ -2.55
SMC4-205ENST00000465563 PKHD1L1Q86WI1 4243 aa-0.86□□□□□ -2.55
SMC4-205ENST00000465563 USP9XQ93008 2570 aaPredicted RBP-0.87□□□□□ -2.55
SMC4-205ENST00000465563 EDC4Q6P2E9 1401 aaKnown RBP-0.87□□□□□ -2.55
SMC4-205ENST00000465563 NCOA3Q9Y6Q9 1424 aa-0.87□□□□□ -2.55
SMC4-205ENST00000465563 REV3LO60673 3130 aa-0.87□□□□□ -2.55
SMC4-205ENST00000465563 C7orf77A4D0Y5 90 aa-0.87□□□□□ -2.55
SMC4-205ENST00000465563 DEFA5Q01523 94 aa-0.87□□□□□ -2.55
SMC4-205ENST00000465563 RYR2Q92736 4967 aa-0.87□□□□□ -2.55
SMC4-205ENST00000465563 NBASA2RRP1 2371 aa-0.88□□□□□ -2.55
SMC4-205ENST00000465563 AKAP13Q12802 2813 aa-0.88□□□□□ -2.55
SMC4-205ENST00000465563 PRDM15P57071 1507 aaPredicted RBP-0.88□□□□□ -2.55
SMC4-205ENST00000465563 CRIPTQ9P021 101 aa-0.88□□□□□ -2.55
SMC4-205ENST00000465563 FAT3Q8TDW7 4589 aa-0.88□□□□□ -2.55
SMC4-205ENST00000465563 ANKRD11Q6UB99 2663 aaPredicted RBP-0.89□□□□□ -2.55
SMC4-205ENST00000465563 LRRC37AA6NMS7 1700 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 MT1AP04731 61 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 C6orf201Q7Z4U5 140 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 CACFD1Q9UGQ2 172 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 AKAP9Q99996 3911 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 DNAH2Q9P225 4427 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 MON2Q7Z3U7 1717 aa-0.89□□□□□ -2.55
SMC4-205ENST00000465563 CCDC141Q6ZP82 1450 aa-0.9□□□□□ -2.55
SMC4-205ENST00000465563 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.9□□□□□ -2.551e-8■■■■■ 36.7
SMC4-205ENST00000465563 TRBV25-1A0A075B6N4 114 aa-0.9□□□□□ -2.55
SMC4-205ENST00000465563 H7BZZ5 65 aa-0.9□□□□□ -2.55
SMC4-205ENST00000465563 MLH3Q9UHC1 1453 aa-0.91□□□□□ -2.55
SMC4-205ENST00000465563 A0A0G2JND7 137 aa-0.91□□□□□ -2.56
SMC4-205ENST00000465563 C20orf202A1L168 122 aa-0.91□□□□□ -2.56
SMC4-205ENST00000465563 H0YGG7 62 aa-0.91□□□□□ -2.56
SMC4-205ENST00000465563 ASIPP42127 132 aa-0.91□□□□□ -2.56
SMC4-205ENST00000465563 H1FX-AS1Q4G0G2 97 aa-0.91□□□□□ -2.56
SMC4-205ENST00000465563 WDR87Q6ZQQ6 2873 aa-0.92□□□□□ -2.56
SMC4-205ENST00000465563 H0Y9P7 68 aa-0.92□□□□□ -2.56
SMC4-205ENST00000465563 NDUFC1O43677 76 aa-0.92□□□□□ -2.56
SMC4-205ENST00000465563 DEFB107AQ8IZN7 70 aa-0.92□□□□□ -2.56
SMC4-205ENST00000465563 DNAH9Q9NYC9 4486 aa-0.92□□□□□ -2.56
SMC4-205ENST00000465563 COL14A1Q05707 1796 aaKnown RBP-0.93□□□□□ -2.56
SMC4-205ENST00000465563 TEX15Q9BXT5 2789 aa-0.93□□□□□ -2.56
SMC4-205ENST00000465563 KIF20BQ96Q89 1820 aa-0.93□□□□□ -2.56
SMC4-205ENST00000465563 H3BNG1 76 aa-0.93□□□□□ -2.56
SMC4-205ENST00000465563 H3BQF6 201 aa-0.93□□□□□ -2.56
SMC4-205ENST00000465563 PLECQ15149 4684 aaKnown RBP-0.93□□□□□ -2.56
SMC4-205ENST00000465563 PKD1P98161 4303 aa-0.93□□□□□ -2.56
SMC4-205ENST00000465563 LAMA3Q16787 3333 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 KALRNO60229 2985 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 MGAM2Q2M2H8 2515 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 DMXL1Q9Y485 3027 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 GNGT2O14610 69 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 C9orf62Q8N4C0 152 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 TRGV9Q99603 122 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 VAMP8Q9BV40 100 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 C5P01031 1676 aa-0.94□□□□□ -2.56
SMC4-205ENST00000465563 MYH4Q9Y623 1939 aa-0.95□□□□□ -2.56
SMC4-205ENST00000465563 PMCHL1Q16048 86 aa-0.95□□□□□ -2.56
SMC4-205ENST00000465563 PSMG4Q5JS54 123 aa-0.95□□□□□ -2.56
SMC4-205ENST00000465563 NRXN1Q9ULB1 1477 aa-0.95□□□□□ -2.56
SMC4-205ENST00000465563 RNF213Q63HN8 5207 aa-0.95□□□□□ -2.56
SMC4-205ENST00000465563 ANK3Q12955 4377 aaKnown RBP-0.95□□□□□ -2.56
SMC4-205ENST00000465563 ACACAQ13085 2346 aa-0.95□□□□□ -2.56
SMC4-205ENST00000465563 I3L3M4 83 aa-0.96□□□□□ -2.56
SMC4-205ENST00000465563 MT-ATP8P03928 68 aa-0.96□□□□□ -2.56
SMC4-205ENST00000465563 C14orf144Q96I85 54 aa-0.96□□□□□ -2.56
SMC4-205ENST00000465563 VPS13BQ7Z7G8 4022 aa-0.96□□□□□ -2.56
SMC4-205ENST00000465563 RIF1Q5UIP0 2472 aaKnown RBP-0.96□□□□□ -2.56
SMC4-205ENST00000465563 CUX1P39880 1505 aa-0.97□□□□□ -2.56
SMC4-205ENST00000465563 MPC2O95563 127 aa-0.97□□□□□ -2.56
SMC4-205ENST00000465563 MT1HP80294 61 aa-0.97□□□□□ -2.56
SMC4-205ENST00000465563 LYSTQ99698 3801 aa-0.97□□□□□ -2.56
SMC4-205ENST00000465563 DNHD1Q96M86 4753 aa-0.97□□□□□ -2.57
SMC4-205ENST00000465563 ANKRD36BQ8N2N9 1353 aa-0.97□□□□□ -2.57
SMC4-205ENST00000465563 UTP20O75691 2785 aaKnown RBP-0.97□□□□□ -2.57
SMC4-205ENST00000465563 RGPD2P0DJD1 1756 aa-0.98□□□□□ -2.57
SMC4-205ENST00000465563 LRRK2Q5S007 2527 aa-0.98□□□□□ -2.57
SMC4-205ENST00000465563 ARMS2P0C7Q2 107 aa-0.98□□□□□ -2.57
SMC4-205ENST00000465563 MRPL34Q9BQ48 92 aaKnown RBP-0.98□□□□□ -2.57
SMC4-205ENST00000465563 CELSR3Q9NYQ7 3312 aa-0.98□□□□□ -2.57
SMC4-205ENST00000465563 TROQ12816 1431 aaPredicted RBP-0.98□□□□□ -2.57
SMC4-205ENST00000465563 NBEAQ8NFP9 2946 aa-0.99□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms