RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 WIPF1O43516 503 aa12.4□□□□□ -0.42
SYNE4-204ENST00000465425 ENHOQ6UWT2 76 aa12.4□□□□□ -0.42
SYNE4-204ENST00000465425 LINC00846Q9NV44 126 aa12.4□□□□□ -0.42
SYNE4-204ENST00000465425 LYPD5Q6UWN5 251 aa12.39□□□□□ -0.43
SYNE4-204ENST00000465425 CCKP06307 115 aa12.36□□□□□ -0.43
SYNE4-204ENST00000465425 HIVEP1P15822 2718 aa12.36□□□□□ -0.43
SYNE4-204ENST00000465425 RPL18AQ02543 176 aaKnown RBP12.35□□□□□ -0.43
SYNE4-204ENST00000465425 LINC00575Q6W349 94 aa12.34□□□□□ -0.43
SYNE4-204ENST00000465425 Q6JHZ5 121 aa12.34□□□□□ -0.43
SYNE4-204ENST00000465425 GVQW2A0A096LPI5 108 aaPredicted RBP12.33□□□□□ -0.44
SYNE4-204ENST00000465425 IGKV3D-7A0A0C4DH55 119 aa12.33□□□□□ -0.44
SYNE4-204ENST00000465425 hADV29S1A0JD25 119 aa12.32□□□□□ -0.44
SYNE4-204ENST00000465425 IGLV6-57P01721 117 aa12.32□□□□□ -0.44
SYNE4-204ENST00000465425 KPRPQ5T749 579 aaPredicted RBP12.32□□□□□ -0.44
SYNE4-204ENST00000465425 C6orf48Q9UBA6 75 aa12.32□□□□□ -0.44
SYNE4-204ENST00000465425 OXLD1Q5BKU9 147 aa12.31□□□□□ -0.44
SYNE4-204ENST00000465425 WFDC10BQ8IUB3 73 aa12.31□□□□□ -0.44
SYNE4-204ENST00000465425 ZNF561-AS1K7EIQ3 104 aa12.31□□□□□ -0.44
SYNE4-204ENST00000465425 RETNQ9HD89 108 aa12.31□□□□□ -0.44
SYNE4-204ENST00000465425 H3BNG1 76 aa12.3□□□□□ -0.44
SYNE4-204ENST00000465425 XAGE1AQ9HD64 81 aa12.29□□□□□ -0.44
SYNE4-204ENST00000465425 ATOX1O00244 68 aa12.28□□□□□ -0.44
SYNE4-204ENST00000465425 Q6ZTC4 211 aa12.28□□□□□ -0.44
SYNE4-204ENST00000465425 C3orf22Q8N5N4 141 aa12.28□□□□□ -0.44
SYNE4-204ENST00000465425 CAMK2N2Q96S95 79 aa12.28□□□□□ -0.44
SYNE4-204ENST00000465425 UQCRQO14949 82 aa12.27□□□□□ -0.44
SYNE4-204ENST00000465425 HIST1H4AP62805 103 aaKnown RBP12.27□□□□□ -0.44
SYNE4-204ENST00000465425 HIGD2BQ4VC39 106 aa12.27□□□□□ -0.44
SYNE4-204ENST00000465425 TRBV10-3A0A0K0K1G6 114 aa12.27□□□□□ -0.45
SYNE4-204ENST00000465425 TRAV23DV6A0A075B6W5 121 aa12.26□□□□□ -0.45
SYNE4-204ENST00000465425 C9orf153Q5TBE3 101 aa12.26□□□□□ -0.45
SYNE4-204ENST00000465425 LAMTOR3Q9UHA4 124 aa12.26□□□□□ -0.45
SYNE4-204ENST00000465425 RBM3P98179 157 aaKnown RBP12.26□□□□□ -0.45
SYNE4-204ENST00000465425 DIRC1Q969H9 104 aa12.25□□□□□ -0.45
SYNE4-204ENST00000465425 KRTAP10-11P60412 298 aa12.25□□□□□ -0.45
SYNE4-204ENST00000465425 C3orf56Q8N813 242 aa12.25□□□□□ -0.45
SYNE4-204ENST00000465425 A0A087WVE0 104 aa12.23□□□□□ -0.45
SYNE4-204ENST00000465425 Q6ZQY7 126 aa12.23□□□□□ -0.45
SYNE4-204ENST00000465425 COX7CP15954 63 aa12.22□□□□□ -0.45
SYNE4-204ENST00000465425 UBL5Q9BZL1 73 aa12.22□□□□□ -0.45
SYNE4-204ENST00000465425 ZNF73O43830 326 aaPredicted RBP12.21□□□□□ -0.45
SYNE4-204ENST00000465425 EGFEM1PQ0D2K5 195 aa12.21□□□□□ -0.45
SYNE4-204ENST00000465425 ATP5EP2Q5VTU8 51 aa12.21□□□□□ -0.45
SYNE4-204ENST00000465425 H3BQ85 93 aa12.21□□□□□ -0.46
SYNE4-204ENST00000465425 ESRGQ1W209 222 aa12.2□□□□□ -0.46
SYNE4-204ENST00000465425 C1orf43Q9BWL3 253 aa12.2□□□□□ -0.46
SYNE4-204ENST00000465425 KRTAP26-1Q6PEX3 210 aa12.2□□□□□ -0.46
SYNE4-204ENST00000465425 Q6ZQT0 140 aa12.2□□□□□ -0.46
SYNE4-204ENST00000465425 Q6ZRU5 148 aa12.2□□□□□ -0.46
SYNE4-204ENST00000465425 DSCR8Q96T75 97 aa12.19□□□□□ -0.46
SYNE4-204ENST00000465425 COX7BP24311 80 aa12.18□□□□□ -0.46
SYNE4-204ENST00000465425 C15orf56Q8N910 161 aa12.18□□□□□ -0.46
SYNE4-204ENST00000465425 LOC110117498A0A087WWA1 95 aa12.17□□□□□ -0.46
SYNE4-204ENST00000465425 VPREB1P12018 145 aa12.17□□□□□ -0.46
SYNE4-204ENST00000465425 NDUFC2-KCTD14E9PQ53 114 aa12.17□□□□□ -0.46
SYNE4-204ENST00000465425 C2orf48Q96LS8 159 aa12.17□□□□□ -0.46
SYNE4-204ENST00000465425 DEFB131BA0A096LNP1 70 aa12.16□□□□□ -0.46
SYNE4-204ENST00000465425 USP17L23D6RBM5 183 aa12.16□□□□□ -0.46
SYNE4-204ENST00000465425 IGKV2D-24A0A075B6R9 120 aa12.16□□□□□ -0.46
SYNE4-204ENST00000465425 GHRHP01286 108 aa12.16□□□□□ -0.46
SYNE4-204ENST00000465425 M0R378 163 aa12.15□□□□□ -0.46
SYNE4-204ENST00000465425 ELOF1P60002 83 aaKnown RBP12.15□□□□□ -0.46
SYNE4-204ENST00000465425 LINC01556Q5JQF7 62 aa12.15□□□□□ -0.46
SYNE4-204ENST00000465425 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.15□□□□□ -0.46
SYNE4-204ENST00000465425 C11orf45Q8TAV5 145 aa12.15□□□□□ -0.46
SYNE4-204ENST00000465425 TRBV7-6A0A0J9YX20 115 aa12.14□□□□□ -0.47
SYNE4-204ENST00000465425 PDE6GP18545 87 aa12.14□□□□□ -0.47
SYNE4-204ENST00000465425 ANK2Q01484 3957 aa12.14□□□□□ -0.47
SYNE4-204ENST00000465425 PKD1L1Q8TDX9 2849 aa12.13□□□□□ -0.47
SYNE4-204ENST00000465425 SMIM20Q8N5G0 67 aa12.12□□□□□ -0.47
SYNE4-204ENST00000465425 SERP2Q8N6R1 65 aa12.12□□□□□ -0.47
SYNE4-204ENST00000465425 CRYGAP11844 174 aa12.12□□□□□ -0.47
SYNE4-204ENST00000465425 Q6ZRP5 223 aa12.1□□□□□ -0.47
SYNE4-204ENST00000465425 KRTAP24-1Q3LI83 254 aa12.1□□□□□ -0.47
SYNE4-204ENST00000465425 FAM19A1Q7Z5A9 133 aa12.1□□□□□ -0.47
SYNE4-204ENST00000465425 F8WDY8 70 aa12.09□□□□□ -0.47
SYNE4-204ENST00000465425 M0R2N4 97 aa12.09□□□□□ -0.47
SYNE4-204ENST00000465425 SYCNQ0VAF6 134 aa12.09□□□□□ -0.47
SYNE4-204ENST00000465425 UPK3BQ9BT76 320 aa12.09□□□□□ -0.47
SYNE4-204ENST00000465425 F8P00451 2351 aa12.09□□□□□ -0.47
SYNE4-204ENST00000465425 TENM3Q9P273 2699 aa12.06□□□□□ -0.48
SYNE4-204ENST00000465425 HAMPP81172 84 aa12.06□□□□□ -0.48
SYNE4-204ENST00000465425 Q6ZVQ6 151 aa12.05□□□□□ -0.48
SYNE4-204ENST00000465425 LINC00528Q8N1L1 170 aa12.05□□□□□ -0.48
SYNE4-204ENST00000465425 NKAPP1Q8N9T2 125 aa12.04□□□□□ -0.48
SYNE4-204ENST00000465425 TRBV7-4A0A0J9YYF1 115 aa12.04□□□□□ -0.48
SYNE4-204ENST00000465425 DNAH10OSP0CZ25 163 aa12.04□□□□□ -0.48
SYNE4-204ENST00000465425 LINC01547P58512 204 aaPredicted RBP12.04□□□□□ -0.48
SYNE4-204ENST00000465425 STAB1Q9NY15 2570 aa12.02□□□□□ -0.49
SYNE4-204ENST00000465425 FBN1P35555 2871 aaKnown RBP12□□□□□ -0.49
SYNE4-204ENST00000465425 TRAV10A0A0B4J240 114 aa11.99□□□□□ -0.49
SYNE4-204ENST00000465425 CXCL6P80162 114 aa11.98□□□□□ -0.49
SYNE4-204ENST00000465425 CYSTM1Q9H1C7 97 aa11.98□□□□□ -0.49
SYNE4-204ENST00000465425 KCNQ1DNQ9H478 68 aa11.98□□□□□ -0.49
SYNE4-204ENST00000465425 CMYA5Q8N3K9 4069 aa11.98□□□□□ -0.49
SYNE4-204ENST00000465425 SERTAD4-AS1Q5TG53 156 aa11.97□□□□□ -0.49
SYNE4-204ENST00000465425 C7orf33Q8WU49 177 aa11.96□□□□□ -0.49
SYNE4-204ENST00000465425 LINC00588Q9Y4M8 146 aa11.95□□□□□ -0.5
SYNE4-204ENST00000465425 MRAPQ8TCY5 172 aa11.95□□□□□ -0.5
SYNE4-204ENST00000465425 TLX1NBP0CAT3 122 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms