RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 HIST1H4AP62805 103 aaKnown RBP5.3□□□□□ -1.56
USP4-207ENST00000462673 RMI2Q96E14 147 aa5.3□□□□□ -1.56
USP4-207ENST00000462673 CSMD3Q7Z407 3707 aa5.3□□□□□ -1.56
USP4-207ENST00000462673 DNAH7Q8WXX0 4024 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 SMIM1B2RUZ4 78 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 J3QL48 77 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 BAALC-AS2P0C853 105 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 LINC00694P0DN24 101 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 CRYGAP11844 174 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 MALP21145 153 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 TMEM258P61165 79 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 GAGE2AQ6NT46 116 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 C6orf223Q8N319 242 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 OR13C6PQ8NH95 151 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 TMEM243Q9BU79 118 aa5.29□□□□□ -1.56
USP4-207ENST00000462673 IBA57-AS1B1ANH7 110 aa5.28□□□□□ -1.56
USP4-207ENST00000462673 RPL18AQ02543 176 aaKnown RBP5.28□□□□□ -1.56
USP4-207ENST00000462673 C5orf47Q569G3 176 aa5.28□□□□□ -1.56
USP4-207ENST00000462673 LCE2AQ5TA79 106 aaPredicted RBP5.28□□□□□ -1.56
USP4-207ENST00000462673 Q6ZR54 194 aa5.28□□□□□ -1.56
USP4-207ENST00000462673 ZNF625Q96I27 306 aaPredicted RBP5.28□□□□□ -1.56
USP4-207ENST00000462673 CSDC2Q9Y534 153 aaKnown RBP5.28□□□□□ -1.56
USP4-207ENST00000462673 A0A1B0GUV1 79 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 PSCAO43653 123 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 RPL28P46779 137 aaKnown RBP5.27□□□□□ -1.57
USP4-207ENST00000462673 LINC00242Q5T6M2 205 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 ATP5EP2Q5VTU8 51 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 SOSTDC1Q6X4U4 206 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 WFDC10BQ8IUB3 73 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 Q9UF83 564 aa5.27□□□□□ -1.57
USP4-207ENST00000462673 ANGP03950 147 aaKnown RBP5.26□□□□□ -1.57
USP4-207ENST00000462673 S100A7L2Q5SY68 101 aa5.26□□□□□ -1.57
USP4-207ENST00000462673 H0YGX0 51 aa5.25□□□□□ -1.57
USP4-207ENST00000462673 RPS28P62857 69 aaKnown RBP5.25□□□□□ -1.57
USP4-207ENST00000462673 C2orf48Q96LS8 159 aa5.25□□□□□ -1.57
USP4-207ENST00000462673 FAM218AQ96MZ4 157 aa5.25□□□□□ -1.57
USP4-207ENST00000462673 COX6A2Q02221 97 aa5.24□□□□□ -1.57
USP4-207ENST00000462673 NTM-AS1Q6ZSK4 140 aa5.24□□□□□ -1.57
USP4-207ENST00000462673 SERP2Q8N6R1 65 aa5.24□□□□□ -1.57
USP4-207ENST00000462673 COX7B2Q8TF08 81 aa5.24□□□□□ -1.57
USP4-207ENST00000462673 KLK12Q9UKR0 248 aa5.24□□□□□ -1.57
USP4-207ENST00000462673 C22orf24Q9Y442 160 aa5.24□□□□□ -1.57
USP4-207ENST00000462673 A0A0U1RRA0 63 aa5.23□□□□□ -1.57
USP4-207ENST00000462673 LCE2CQ5TA81 110 aa5.23□□□□□ -1.57
USP4-207ENST00000462673 OBSCN-AS1Q96MR7 158 aa5.23□□□□□ -1.57
USP4-207ENST00000462673 C1orf43Q9BWL3 253 aa5.23□□□□□ -1.57
USP4-207ENST00000462673 SND1-IT1Q9HBX3 110 aa5.23□□□□□ -1.57
USP4-207ENST00000462673 STARD9Q9P2P6 4700 aa5.23□□□□□ -1.57
USP4-207ENST00000462673 DYNC2H1Q8NCM8 4307 aaKnown RBP5.22□□□□□ -1.57
USP4-207ENST00000462673 TRAV13-1A0A0B4J241 112 aa5.22□□□□□ -1.57
USP4-207ENST00000462673 hADV29S1A0JD25 119 aa5.22□□□□□ -1.57
USP4-207ENST00000462673 NDUFC2-KCTD14E9PQ53 114 aa5.22□□□□□ -1.57
USP4-207ENST00000462673 REG3AQ06141 175 aa5.22□□□□□ -1.57
USP4-207ENST00000462673 LINC00269Q8N2A0 174 aa5.22□□□□□ -1.57
USP4-207ENST00000462673 Q9HAA7 133 aa5.22□□□□□ -1.57
USP4-207ENST00000462673 IGKV2D-24A0A075B6R9 120 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 SS18Q15532 418 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 C14orf177Q52M58 125 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 FAM19A5Q7Z5A7 132 aaPredicted RBP5.21□□□□□ -1.58
USP4-207ENST00000462673 MIR7-3HGQ8N6C7 128 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 LINC00337Q8N6G1 96 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 SMIM11BQ8TCY0 68 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 C14orf132Q9NPU4 83 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 CDC42SE2Q9NRR3 84 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 ORMDL1Q9P0S3 153 aa5.21□□□□□ -1.58
USP4-207ENST00000462673 PLECQ15149 4684 aaKnown RBP5.21□□□□□ -1.58
USP4-207ENST00000462673 A0A087WYN8 130 aa5.2□□□□□ -1.58
USP4-207ENST00000462673 IGKV3D-7A0A0C4DH55 119 aa5.2□□□□□ -1.58
USP4-207ENST00000462673 USP17L23D6RBM5 183 aa5.2□□□□□ -1.58
USP4-207ENST00000462673 RTL8CO15255 209 aa5.2□□□□□ -1.58
USP4-207ENST00000462673 PRR34Q9NV39 138 aa5.2□□□□□ -1.58
USP4-207ENST00000462673 IGKV2-28A0A075B6P5 120 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 LOC107984640A0A0U1RRK4 108 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 JMJD7-PLA2G4BH0Y9G9 81 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 LECT2O14960 151 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 NDUFC2O95298 119 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 IGKV2D-28P01615 120 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 LINC00158P58513 81 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 KRTAP1-5Q9BYS1 174 aa5.19□□□□□ -1.58
USP4-207ENST00000462673 CCKP06307 115 aa5.18□□□□□ -1.58
USP4-207ENST00000462673 ENHOQ6UWT2 76 aa5.18□□□□□ -1.58
USP4-207ENST00000462673 LINC00167Q96N53 147 aa5.18□□□□□ -1.58
USP4-207ENST00000462673 LINC00846Q9NV44 126 aa5.18□□□□□ -1.58
USP4-207ENST00000462673 TOMM7Q9P0U1 55 aa5.18□□□□□ -1.58
USP4-207ENST00000462673 LYSTQ99698 3801 aa5.17□□□□□ -1.58
USP4-207ENST00000462673 IGLV4-60A0A075B6I1 120 aa5.17□□□□□ -1.58
USP4-207ENST00000462673 KMT2CQ8NEZ4 4911 aaKnown RBP5.16□□□□□ -1.58
USP4-207ENST00000462673 A0A087WTM6 91 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 IGKV3OR2-268A0A0C4DH90 116 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 TRBV10-3A0A0K0K1G6 114 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 NCR3O14931 201 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 BCE1O60756 84 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 GHRHP01286 108 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 TNP2Q05952 138 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 Q6ZRN7 208 aaPredicted RBP5.16□□□□□ -1.58
USP4-207ENST00000462673 LINC00528Q8N1L1 170 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 DPH3Q96FX2 82 aa5.16□□□□□ -1.58
USP4-207ENST00000462673 A0A087WVE0 104 aa5.15□□□□□ -1.59
USP4-207ENST00000462673 A0A087WZ39 114 aa5.15□□□□□ -1.59
USP4-207ENST00000462673 FAM236DA0A1B0GTK5 79 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms